Wall clock time and date at job start Tue Mar 31 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99539 * 2 1 4 4 C 1.39671 * 120.00356 * 180.02562 * 2 1 3 5 5 C 1.38931 * 120.07494 * 180.02562 * 4 2 1 6 6 C 1.38084 * 119.92673 * 179.97438 * 5 4 2 7 7 C 1.38309 * 120.07028 * 359.72262 * 6 5 4 8 8 C 1.38267 * 120.15062 * 0.55162 * 7 6 5 9 9 C 1.50696 * 119.96006 * 179.72687 * 8 7 6 10 10 C 1.53002 * 109.47061 * 269.72431 * 9 8 7 11 11 C 1.50703 * 109.47206 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00248 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99737 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99721 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47189 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46930 * 304.99963 * 15 14 13 17 17 O 1.42905 * 109.47079 * 64.99736 * 15 14 13 18 18 C 1.52997 * 109.47143 * 184.99897 * 15 14 13 19 19 N 1.46500 * 109.47007 * 179.97438 * 18 15 14 20 20 C 1.36943 * 120.00062 * 180.02562 * 19 18 15 21 21 H 1.07999 * 119.99847 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00198 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99691 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47023 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47352 * 120.00042 * 24 22 20 27 27 H 1.48504 * 109.46912 * 240.00158 * 24 22 20 28 28 C 1.38121 * 120.07124 * 359.45027 * 8 7 6 29 29 H 1.08999 * 109.46759 * 269.99567 * 1 2 3 30 30 H 1.08998 * 109.47621 * 29.99963 * 1 2 3 31 31 H 1.09003 * 109.46853 * 150.00369 * 1 2 3 32 32 H 1.09009 * 109.47263 * 269.99820 * 3 2 1 33 33 H 1.08999 * 109.47255 * 30.00217 * 3 2 1 34 34 H 1.09010 * 109.47210 * 150.00380 * 3 2 1 35 35 H 1.08005 * 120.04066 * 359.95110 * 5 4 2 36 36 H 1.07997 * 119.96668 * 179.97438 * 6 5 4 37 37 H 1.08004 * 119.92121 * 180.29527 * 7 6 5 38 38 H 1.08997 * 109.47424 * 149.72444 * 9 8 7 39 39 H 1.08996 * 109.47990 * 29.72390 * 9 8 7 40 40 H 1.08996 * 109.47536 * 60.00281 * 10 9 8 41 41 H 1.09005 * 109.46847 * 300.00176 * 10 9 8 42 42 H 0.96993 * 120.00520 * 0.02562 * 13 11 10 43 43 H 1.08997 * 109.47122 * 60.00313 * 14 13 11 44 44 H 1.09005 * 109.47144 * 299.99936 * 14 13 11 45 45 H 0.96702 * 113.99404 * 60.00301 * 17 15 14 46 46 H 1.08992 * 109.47303 * 299.99548 * 18 15 14 47 47 H 1.09002 * 109.47153 * 60.00035 * 18 15 14 48 48 H 0.96998 * 120.00098 * 359.97438 * 19 18 15 49 49 H 0.97001 * 120.00051 * 179.97438 * 23 22 20 50 50 H 1.08002 * 120.03257 * 180.25143 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5527 -1.2113 0.0000 6 6 4.2401 -2.4089 0.0000 7 6 3.5470 -3.6057 0.0053 8 6 2.1644 -3.6076 -0.0010 9 6 1.4136 -4.9142 -0.0014 10 6 1.1600 -5.3562 -1.4441 11 6 0.4086 -6.6626 -1.4446 12 8 0.1062 -7.1886 -0.3945 13 7 0.0728 -7.2463 -2.6120 14 6 -0.6572 -8.5165 -2.6125 15 6 -0.9109 -8.9584 -4.0552 16 1 -1.4241 -8.1620 -4.5942 17 8 0.3364 -9.2388 -4.6938 18 6 -1.7796 -10.2179 -4.0575 19 7 -2.0230 -10.6406 -5.4389 20 6 -2.7818 -11.7524 -5.6912 21 1 -3.2003 -12.3177 -4.8717 22 6 -3.0128 -12.1526 -7.0001 23 7 -2.5031 -11.4633 -7.9988 24 14 -4.0484 -13.6687 -7.3442 25 1 -4.5013 -14.2607 -6.0598 26 1 -5.2305 -13.2866 -8.1578 27 1 -3.2361 -14.6645 -8.0885 28 6 1.4707 -2.4133 -0.0010 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3791 1.5835 -1.0277 33 1 1.6083 2.0284 0.5139 34 1 3.1499 1.1385 0.5138 35 1 4.0946 -0.2770 0.0000 36 1 5.3201 -2.4110 0.0000 37 1 4.0871 -4.5410 0.0101 38 1 0.4607 -4.7860 0.5121 39 1 2.0039 -5.6728 0.5124 40 1 2.1128 -5.4846 -1.9577 41 1 0.5695 -4.5976 -1.9580 42 1 0.3150 -6.8258 -3.4519 43 1 -1.6098 -8.3883 -2.0986 44 1 -0.0665 -9.2752 -2.0991 45 1 0.8482 -9.9394 -4.2666 46 1 -1.2664 -11.0142 -3.5186 47 1 -2.7310 -10.0039 -3.5704 48 1 -1.6473 -10.1326 -6.1749 49 1 -2.6642 -11.7432 -8.9135 50 1 0.3906 -2.4155 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716098848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:43 Heat of formation + Delta-G solvation = -75.813780 kcal Electronic energy + Delta-G solvation = -27337.075380 eV Core-core repulsion = 23363.167208 eV Total energy + Delta-G solvation = -3973.908172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98595 -40.43666 -38.95388 -37.39188 -36.07034 -35.26689 -34.62401 -33.19367 -31.51445 -30.90508 -30.18634 -28.95160 -27.18842 -25.67974 -25.37434 -24.06885 -22.75521 -22.48408 -21.35370 -20.88809 -19.24930 -18.41532 -18.08222 -17.52216 -17.27148 -16.86522 -16.47286 -16.36299 -16.30303 -16.13821 -15.91163 -15.49125 -15.09770 -14.92783 -14.86919 -14.55031 -14.29747 -14.05363 -13.96845 -13.67186 -13.64390 -13.43198 -13.16626 -12.95236 -12.90751 -12.79103 -12.77901 -12.71063 -12.31749 -12.12271 -11.95811 -11.90878 -11.80910 -11.61091 -11.17067 -10.99582 -10.80262 -10.62973 -10.10356 -9.61580 -9.01330 -8.15859 -7.95358 -5.24840 0.53014 0.74484 1.47882 1.48514 1.58730 1.66071 2.16882 2.28569 2.56214 2.99152 3.36116 3.47107 3.61614 3.70022 3.97276 4.03301 4.04480 4.12505 4.20705 4.22964 4.29661 4.35590 4.43892 4.45574 4.53568 4.60869 4.62090 4.66258 4.67893 4.78234 4.78897 4.81979 4.90756 4.92399 4.93258 5.08258 5.13723 5.20945 5.23012 5.40929 5.43241 5.48528 5.68788 5.85564 6.01668 6.25947 6.38481 6.55623 6.60201 6.79823 7.25870 7.33255 8.08527 8.31948 9.27980 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.001509 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.070191 B =18556.691885 C =18908.281444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.647 5.647 3 C 0.090 3.910 4 C 0.202 3.798 5 C -0.212 4.212 6 C -0.074 4.074 7 C -0.186 4.186 8 C -0.039 4.039 9 C -0.059 4.059 10 C -0.123 4.123 11 C 0.510 3.490 12 O -0.586 6.586 13 N -0.715 5.715 14 C 0.102 3.898 15 C 0.108 3.892 16 H 0.102 0.898 17 O -0.563 6.563 18 C 0.121 3.879 19 N -0.739 5.739 20 C -0.249 4.249 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.293 1.293 28 C -0.206 4.206 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.415 0.585 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.385 0.615 46 H 0.030 0.970 47 H 0.033 0.967 48 H 0.377 0.623 49 H 0.251 0.749 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.014 27.177 18.460 35.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.359 5.359 3 C -0.053 4.053 4 C 0.100 3.900 5 C -0.234 4.234 6 C -0.093 4.093 7 C -0.206 4.206 8 C -0.040 4.040 9 C -0.097 4.097 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.467 6.467 13 N -0.367 5.367 14 C -0.023 4.023 15 C 0.048 3.952 16 H 0.119 0.881 17 O -0.369 6.369 18 C -0.006 4.006 19 N -0.382 5.382 20 C -0.381 4.381 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.803 3.197 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.229 4.229 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.252 0.748 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.233 0.767 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.374 27.318 18.865 35.430 hybrid contribution -0.361 -1.054 -0.669 1.299 sum 12.014 26.265 18.196 34.136 Atomic orbital electron populations 1.21732 0.78830 1.03364 1.01488 1.46556 1.05696 1.03339 1.80334 1.21754 0.97534 0.84378 1.01626 1.18018 0.91725 0.86167 0.94048 1.20903 0.92086 0.99388 1.11051 1.21139 1.00464 0.91615 0.96064 1.21021 0.93499 0.98724 1.07402 1.19619 0.93871 0.93833 0.96684 1.20228 1.00189 0.93675 0.95562 1.21610 1.02163 0.93301 0.99157 1.21241 0.78790 0.87234 0.82893 1.90692 1.56590 1.66667 1.32751 1.45892 1.57824 1.23568 1.09384 1.21825 0.97503 0.86401 0.96605 1.22094 0.84847 0.96572 0.91640 0.88054 1.86555 1.32026 1.60220 1.58123 1.21410 0.97408 0.94946 0.86874 1.42410 1.61656 1.31517 1.02658 1.19693 1.23160 1.03113 0.92117 0.90588 1.25588 1.02996 1.02565 0.95538 1.69841 1.51032 1.42562 0.98341 0.85063 0.77753 0.78987 0.77865 1.19031 1.21977 1.22004 1.20670 0.99866 0.90820 1.11508 0.93239 0.90048 0.91492 0.93058 0.90210 0.91006 0.84878 0.84345 0.85620 0.91379 0.91013 0.86864 0.87110 0.74833 0.90812 0.91118 0.76655 0.95215 0.94926 0.79053 0.93990 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.19 127.77 1.30 2.17 16 2 N -0.65 -8.48 3.41 -747.26 -2.55 -11.02 16 3 C 0.09 0.72 10.19 127.77 1.30 2.03 16 4 C 0.20 3.35 6.55 38.21 0.25 3.60 16 5 C -0.21 -3.20 9.21 22.40 0.21 -2.99 16 6 C -0.07 -1.09 10.04 22.25 0.22 -0.87 16 7 C -0.19 -3.04 9.69 22.29 0.22 -2.82 16 8 C -0.04 -0.68 5.13 -19.89 -0.10 -0.79 16 9 C -0.06 -1.05 4.63 29.85 0.14 -0.92 16 10 C -0.12 -1.95 5.68 29.85 0.17 -1.78 16 11 C 0.51 11.66 7.83 87.66 0.69 12.35 16 12 O -0.59 -18.28 15.98 -3.03 -0.05 -18.32 16 13 N -0.71 -15.15 5.50 -463.05 -2.55 -17.69 16 14 C 0.10 2.52 5.31 86.38 0.46 2.98 16 15 C 0.11 3.18 3.09 30.59 0.09 3.27 16 16 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 17 O -0.56 -17.10 13.03 -148.98 -1.94 -19.04 16 18 C 0.12 4.58 5.92 86.38 0.51 5.09 16 19 N -0.74 -37.27 5.49 -343.46 -1.89 -39.15 16 20 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 23 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 24 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 C -0.21 -3.57 8.86 22.40 0.20 -3.37 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.53 8.07 -2.39 -0.02 0.51 16 31 H 0.07 0.69 6.20 -2.39 -0.01 0.68 16 32 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.08 0.40 8.07 -2.39 -0.02 0.39 16 34 H 0.07 0.52 6.20 -2.38 -0.01 0.51 16 35 H 0.13 1.52 6.14 -2.91 -0.02 1.50 16 36 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 39 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.41 7.29 8.47 -92.71 -0.79 6.51 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.38 9.71 9.05 -74.06 -0.67 9.04 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.38 20.57 7.54 -92.71 -0.70 19.87 16 49 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 50 H 0.12 1.96 6.14 -2.91 -0.02 1.94 16 Total: -1.00 -74.14 412.67 -0.89 -75.03 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -1.19 Total: 40.25 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 6.96 Total: 1.05 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -6.70 Total: -127.17 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.99 Total: -37.36 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -74.14 -0.89 -75.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716098848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.782 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds