Wall clock time and date at job start Tue Mar 31 2020 18:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99678 * 2 1 4 4 C 1.39668 * 120.00000 * 179.72289 * 2 1 3 5 5 C 1.38937 * 120.07554 * 173.97514 * 4 2 1 6 6 C 1.38078 * 119.92753 * 179.79108 * 5 4 2 7 7 C 1.38312 * 120.07285 * 0.49141 * 6 5 4 8 8 C 1.38258 * 120.15142 * 359.74022 * 7 6 5 9 9 C 1.50697 * 119.96388 * 180.02562 * 8 7 6 10 10 C 1.53009 * 109.46601 * 270.01967 * 9 8 7 11 11 C 1.50706 * 109.46638 * 180.02562 * 10 9 8 12 12 O 1.21272 * 120.00170 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99362 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99592 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47022 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46877 * 60.00066 * 15 14 13 17 17 O 1.42895 * 109.46915 * 300.00369 * 15 14 13 18 18 C 1.52997 * 109.47092 * 179.97438 * 15 14 13 19 19 N 1.46504 * 109.47056 * 184.99923 * 18 15 14 20 20 C 1.36931 * 119.99783 * 180.02562 * 19 18 15 21 21 H 1.08000 * 120.00668 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00102 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00285 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99726 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47382 * 90.00038 * 24 22 20 26 26 H 1.48509 * 109.47148 * 210.00207 * 24 22 20 27 27 H 1.48505 * 109.47021 * 329.99869 * 24 22 20 28 28 C 1.38131 * 120.07511 * 0.02562 * 8 7 6 29 29 H 1.09004 * 109.47302 * 270.27467 * 1 2 3 30 30 H 1.08991 * 109.47526 * 30.27488 * 1 2 3 31 31 H 1.09000 * 109.47127 * 150.28055 * 1 2 3 32 32 H 1.09000 * 109.46659 * 184.75494 * 3 2 1 33 33 H 1.09007 * 109.47002 * 304.74895 * 3 2 1 34 34 H 1.09001 * 109.47207 * 64.74653 * 3 2 1 35 35 H 1.08006 * 120.03121 * 0.02562 * 5 4 2 36 36 H 1.07995 * 119.96369 * 180.20673 * 6 5 4 37 37 H 1.08001 * 119.92455 * 179.76660 * 7 6 5 38 38 H 1.08995 * 109.47535 * 30.01529 * 9 8 7 39 39 H 1.08997 * 109.47469 * 150.02262 * 9 8 7 40 40 H 1.08996 * 109.47003 * 299.99486 * 10 9 8 41 41 H 1.08997 * 109.46969 * 59.99988 * 10 9 8 42 42 H 0.96995 * 119.99878 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46946 * 300.00061 * 14 13 11 44 44 H 1.09003 * 109.47189 * 59.99758 * 14 13 11 45 45 H 0.96703 * 114.00399 * 299.99547 * 17 15 14 46 46 H 1.08994 * 109.47202 * 305.00214 * 18 15 14 47 47 H 1.09004 * 109.47088 * 65.00130 * 18 15 14 48 48 H 0.96998 * 119.99733 * 0.02562 * 19 18 15 49 49 H 0.97002 * 119.99411 * 180.02562 * 23 22 20 50 50 H 1.07995 * 120.04074 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1633 -1.2095 0.0058 5 6 3.5470 -1.2153 -0.1203 6 6 4.2347 -2.4126 -0.1098 7 6 3.5468 -3.6059 0.0159 8 6 2.1695 -3.6041 0.1368 9 6 1.4243 -4.9068 0.2742 10 6 1.0465 -5.4269 -1.1143 11 6 0.3007 -6.7293 -0.9770 12 8 0.0924 -7.1957 0.1229 13 7 -0.1338 -7.3761 -2.0767 14 6 -0.8582 -8.6425 -1.9433 15 6 -1.2362 -9.1625 -3.3317 16 1 -0.3316 -9.3215 -3.9187 17 8 -2.0682 -8.2046 -3.9889 18 6 -1.9922 -10.4853 -3.1924 19 7 -2.2495 -11.0432 -4.5224 20 6 -2.9181 -12.2314 -4.6488 21 1 -3.2555 -12.7577 -3.7681 22 6 -3.1615 -12.7603 -5.9089 23 7 -3.8037 -13.9027 -6.0305 24 14 -2.5761 -11.8512 -7.4323 25 1 -1.2046 -12.3013 -7.7809 26 1 -3.4941 -12.1389 -8.5637 27 1 -2.5645 -10.3908 -7.1633 28 6 1.4757 -2.4097 0.1319 29 1 -0.3634 0.0049 1.0277 30 1 -0.3634 0.8874 -0.5180 31 1 -0.3633 -0.8925 -0.5095 32 1 3.2660 1.0713 -0.0852 33 1 1.8718 1.8763 -0.8444 34 1 1.9994 1.8026 0.9295 35 1 4.0843 -0.2840 -0.2227 36 1 5.3105 -2.4175 -0.2045 37 1 4.0868 -4.5412 0.0200 38 1 2.0590 -5.6374 0.7755 39 1 0.5197 -4.7478 0.8611 40 1 0.4117 -4.6963 -1.6156 41 1 1.9511 -5.5859 -1.7013 42 1 0.0339 -7.0036 -2.9564 43 1 -0.2236 -9.3730 -1.4415 44 1 -1.7630 -8.4834 -1.3566 45 1 -2.8930 -8.0136 -3.5216 46 1 -1.3922 -11.1875 -2.6137 47 1 -2.9395 -10.3104 -2.6823 48 1 -1.9462 -10.5707 -5.3134 49 1 -3.9733 -14.2723 -6.9111 50 1 0.3999 -2.4090 0.2260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716098849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:47 Heat of formation + Delta-G solvation = -44.678119 kcal Electronic energy + Delta-G solvation = -27430.705933 eV Core-core repulsion = 23458.147905 eV Total energy + Delta-G solvation = -3972.558028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.23722 -39.70543 -37.83110 -36.86437 -34.52003 -34.13312 -33.96074 -31.52522 -30.87683 -30.19530 -29.35620 -28.45012 -25.96804 -25.19676 -24.26258 -22.24087 -21.89393 -21.52855 -20.58138 -20.16989 -17.84592 -17.71001 -17.26923 -16.45144 -16.37471 -16.08312 -15.78774 -15.53055 -15.38829 -15.22834 -14.57279 -14.47802 -14.22107 -13.90682 -13.80258 -13.49375 -13.34751 -13.26089 -13.08641 -12.99213 -12.57240 -12.47943 -12.39141 -12.25794 -12.11677 -11.99087 -11.74628 -11.31848 -11.26049 -11.02954 -10.88007 -10.81947 -10.20428 -10.17529 -10.07065 -9.73605 -9.56234 -9.15846 -9.01994 -8.93833 -7.64606 -7.27080 -5.78699 -3.15014 1.11456 1.32072 2.55120 2.70928 3.05795 3.38547 3.44152 3.45939 3.57753 4.32476 4.49031 4.52192 4.55955 4.59114 4.67295 4.71749 4.80053 4.82894 4.85694 4.92612 4.99630 5.11904 5.12573 5.15011 5.19313 5.26922 5.30905 5.33314 5.38343 5.46186 5.50484 5.67393 5.69745 5.71717 5.76804 5.86056 5.87393 5.98660 6.25636 6.32499 6.41180 6.44112 6.53792 6.56538 6.83516 7.12750 7.40518 7.75728 7.96943 8.13325 8.39730 9.19127 9.91073 10.10656 11.39308 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.001606 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.023720 B =17426.606131 C =17777.995403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.641 5.641 3 C 0.090 3.910 4 C 0.214 3.786 5 C -0.205 4.205 6 C -0.070 4.070 7 C -0.174 4.174 8 C -0.034 4.034 9 C -0.065 4.065 10 C -0.133 4.133 11 C 0.510 3.490 12 O -0.544 6.544 13 N -0.723 5.723 14 C 0.089 3.911 15 C 0.085 3.915 16 H 0.104 0.896 17 O -0.557 6.557 18 C 0.131 3.869 19 N -0.749 5.749 20 C -0.249 4.249 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.933 5.933 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.273 1.273 28 C -0.192 4.192 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.405 0.595 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.376 0.624 46 H 0.038 0.962 47 H 0.032 0.968 48 H 0.365 0.635 49 H 0.260 0.740 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.862 32.270 13.215 37.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.353 5.353 3 C -0.053 4.053 4 C 0.113 3.887 5 C -0.227 4.227 6 C -0.089 4.089 7 C -0.194 4.194 8 C -0.034 4.034 9 C -0.103 4.103 10 C -0.173 4.173 11 C 0.296 3.704 12 O -0.422 6.422 13 N -0.376 5.376 14 C -0.035 4.035 15 C 0.025 3.975 16 H 0.122 0.878 17 O -0.362 6.362 18 C 0.003 3.997 19 N -0.396 5.396 20 C -0.379 4.379 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.580 5.580 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.199 1.199 28 C -0.215 4.215 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.240 0.760 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.223 0.777 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.199 0.801 49 H 0.070 0.930 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.954 31.876 13.629 37.755 hybrid contribution -0.062 0.715 -1.192 1.392 sum 14.891 32.591 12.436 37.929 Atomic orbital electron populations 1.21607 0.79438 1.02691 1.01200 1.46293 1.05018 1.03128 1.80865 1.21686 0.97708 0.84978 1.00942 1.17818 0.91249 0.85637 0.93961 1.20695 0.92328 0.98641 1.11033 1.20870 0.99372 0.91903 0.96766 1.20847 0.93641 0.98046 1.06817 1.19633 0.93621 0.94080 0.96094 1.20340 1.00693 0.93470 0.95805 1.21629 1.01369 0.94766 0.99532 1.20711 0.79128 0.86243 0.84287 1.90711 1.57293 1.68135 1.26021 1.45957 1.57909 1.24187 1.09502 1.22060 0.97367 0.85710 0.98372 1.22451 0.94648 0.89025 0.91375 0.87796 1.86546 1.35041 1.62011 1.52598 1.21180 0.97205 0.91811 0.89531 1.42570 1.70189 1.25141 1.01653 1.19048 1.28585 0.95825 0.94402 0.89249 1.24669 1.00239 0.96918 0.97146 1.69708 1.45888 1.19561 1.22890 0.86541 0.78336 0.79824 0.83896 1.21098 1.21723 1.19878 1.20561 0.99629 0.90650 1.10616 0.93430 0.91588 0.91231 0.90397 0.92681 0.93093 0.86135 0.86208 0.86330 0.90014 0.90249 0.88806 0.88662 0.76033 0.90310 0.90971 0.77696 0.94438 0.95060 0.80122 0.93014 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.10 59.85 0.60 1.10 16 2 N -0.64 -4.44 3.41 -187.55 -0.64 -5.08 16 3 C 0.09 0.42 10.63 59.85 0.64 1.06 16 4 C 0.21 1.81 6.53 -83.79 -0.55 1.26 16 5 C -0.20 -1.60 9.31 -39.38 -0.37 -1.97 16 6 C -0.07 -0.54 10.04 -39.61 -0.40 -0.94 16 7 C -0.17 -1.44 9.70 -39.55 -0.38 -1.82 16 8 C -0.03 -0.29 5.13 -104.66 -0.54 -0.83 16 9 C -0.07 -0.57 4.63 -27.88 -0.13 -0.70 16 10 C -0.13 -1.08 5.68 -27.88 -0.16 -1.24 16 11 C 0.51 5.79 7.83 -10.98 -0.09 5.71 16 12 O -0.54 -8.29 15.98 5.56 0.09 -8.20 16 13 N -0.72 -7.63 5.45 -60.29 -0.33 -7.95 16 14 C 0.09 1.09 5.34 -4.04 -0.02 1.06 16 15 C 0.08 1.18 3.08 -26.73 -0.08 1.10 16 16 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 17 O -0.56 -7.86 13.03 -35.23 -0.46 -8.32 16 18 C 0.13 2.39 5.90 -4.04 -0.02 2.36 16 19 N -0.75 -17.66 5.35 -59.91 -0.32 -17.98 16 20 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.41 13.97 55.49 0.78 -28.63 16 24 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.27 -6.56 6.52 56.52 0.37 -6.19 16 28 C -0.19 -1.66 8.81 -39.38 -0.35 -2.00 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.07 0.37 6.46 -51.93 -0.34 0.03 16 32 H 0.08 0.32 5.32 -51.93 -0.28 0.04 16 33 H 0.05 0.21 8.14 -51.92 -0.42 -0.22 16 34 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.12 0.73 5.75 -52.48 -0.30 0.43 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 39 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.40 3.60 8.35 -40.82 -0.34 3.26 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.38 4.34 9.05 45.56 0.41 4.75 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.37 8.57 5.53 -40.82 -0.23 8.34 16 49 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 50 H 0.12 0.93 6.31 -52.49 -0.33 0.60 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -35.72 409.16 -8.84 -44.57 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.32 Total: 10.88 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.09 Total: -2.99 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.51 Total: -59.65 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.37 Total: -16.52 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.72 -8.84 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716098849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.112 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds