Wall clock time and date at job start Tue Mar 31 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99678 * 2 1 4 4 C 1.39668 * 120.00000 * 179.72289 * 2 1 3 5 5 C 1.38937 * 120.07554 * 173.97514 * 4 2 1 6 6 C 1.38078 * 119.92753 * 179.79108 * 5 4 2 7 7 C 1.38312 * 120.07285 * 0.49141 * 6 5 4 8 8 C 1.38258 * 120.15142 * 359.74022 * 7 6 5 9 9 C 1.50697 * 119.96388 * 180.02562 * 8 7 6 10 10 C 1.53009 * 109.46601 * 270.01967 * 9 8 7 11 11 C 1.50706 * 109.46638 * 180.02562 * 10 9 8 12 12 O 1.21272 * 120.00170 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99362 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99592 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47022 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46877 * 60.00066 * 15 14 13 17 17 O 1.42895 * 109.46915 * 300.00369 * 15 14 13 18 18 C 1.52997 * 109.47092 * 179.97438 * 15 14 13 19 19 N 1.46504 * 109.47056 * 184.99923 * 18 15 14 20 20 C 1.36931 * 119.99783 * 180.02562 * 19 18 15 21 21 H 1.08000 * 120.00668 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00102 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00285 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99726 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47382 * 90.00038 * 24 22 20 26 26 H 1.48509 * 109.47148 * 210.00207 * 24 22 20 27 27 H 1.48505 * 109.47021 * 329.99869 * 24 22 20 28 28 C 1.38131 * 120.07511 * 0.02562 * 8 7 6 29 29 H 1.09004 * 109.47302 * 270.27467 * 1 2 3 30 30 H 1.08991 * 109.47526 * 30.27488 * 1 2 3 31 31 H 1.09000 * 109.47127 * 150.28055 * 1 2 3 32 32 H 1.09000 * 109.46659 * 184.75494 * 3 2 1 33 33 H 1.09007 * 109.47002 * 304.74895 * 3 2 1 34 34 H 1.09001 * 109.47207 * 64.74653 * 3 2 1 35 35 H 1.08006 * 120.03121 * 0.02562 * 5 4 2 36 36 H 1.07995 * 119.96369 * 180.20673 * 6 5 4 37 37 H 1.08001 * 119.92455 * 179.76660 * 7 6 5 38 38 H 1.08995 * 109.47535 * 30.01529 * 9 8 7 39 39 H 1.08997 * 109.47469 * 150.02262 * 9 8 7 40 40 H 1.08996 * 109.47003 * 299.99486 * 10 9 8 41 41 H 1.08997 * 109.46969 * 59.99988 * 10 9 8 42 42 H 0.96995 * 119.99878 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46946 * 300.00061 * 14 13 11 44 44 H 1.09003 * 109.47189 * 59.99758 * 14 13 11 45 45 H 0.96703 * 114.00399 * 299.99547 * 17 15 14 46 46 H 1.08994 * 109.47202 * 305.00214 * 18 15 14 47 47 H 1.09004 * 109.47088 * 65.00130 * 18 15 14 48 48 H 0.96998 * 119.99733 * 0.02562 * 19 18 15 49 49 H 0.97002 * 119.99411 * 180.02562 * 23 22 20 50 50 H 1.07995 * 120.04074 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1633 -1.2095 0.0058 5 6 3.5470 -1.2153 -0.1203 6 6 4.2347 -2.4126 -0.1098 7 6 3.5468 -3.6059 0.0159 8 6 2.1695 -3.6041 0.1368 9 6 1.4243 -4.9068 0.2742 10 6 1.0465 -5.4269 -1.1143 11 6 0.3007 -6.7293 -0.9770 12 8 0.0924 -7.1957 0.1229 13 7 -0.1338 -7.3761 -2.0767 14 6 -0.8582 -8.6425 -1.9433 15 6 -1.2362 -9.1625 -3.3317 16 1 -0.3316 -9.3215 -3.9187 17 8 -2.0682 -8.2046 -3.9889 18 6 -1.9922 -10.4853 -3.1924 19 7 -2.2495 -11.0432 -4.5224 20 6 -2.9181 -12.2314 -4.6488 21 1 -3.2555 -12.7577 -3.7681 22 6 -3.1615 -12.7603 -5.9089 23 7 -3.8037 -13.9027 -6.0305 24 14 -2.5761 -11.8512 -7.4323 25 1 -1.2046 -12.3013 -7.7809 26 1 -3.4941 -12.1389 -8.5637 27 1 -2.5645 -10.3908 -7.1633 28 6 1.4757 -2.4097 0.1319 29 1 -0.3634 0.0049 1.0277 30 1 -0.3634 0.8874 -0.5180 31 1 -0.3633 -0.8925 -0.5095 32 1 3.2660 1.0713 -0.0852 33 1 1.8718 1.8763 -0.8444 34 1 1.9994 1.8026 0.9295 35 1 4.0843 -0.2840 -0.2227 36 1 5.3105 -2.4175 -0.2045 37 1 4.0868 -4.5412 0.0200 38 1 2.0590 -5.6374 0.7755 39 1 0.5197 -4.7478 0.8611 40 1 0.4117 -4.6963 -1.6156 41 1 1.9511 -5.5859 -1.7013 42 1 0.0339 -7.0036 -2.9564 43 1 -0.2236 -9.3730 -1.4415 44 1 -1.7630 -8.4834 -1.3566 45 1 -2.8930 -8.0136 -3.5216 46 1 -1.3922 -11.1875 -2.6137 47 1 -2.9395 -10.3104 -2.6823 48 1 -1.9462 -10.5707 -5.3134 49 1 -3.9733 -14.2723 -6.9111 50 1 0.3999 -2.4090 0.2260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716098849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:46 Heat of formation + Delta-G solvation = -71.219170 kcal Electronic energy + Delta-G solvation = -27431.856840 eV Core-core repulsion = 23458.147905 eV Total energy + Delta-G solvation = -3973.708934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99459 -40.45137 -39.01685 -37.39747 -36.21043 -35.26078 -34.62685 -33.49297 -31.58540 -31.00907 -30.33293 -28.98651 -27.30759 -25.68528 -25.26133 -23.80945 -22.84843 -22.50286 -21.38306 -20.88931 -19.79047 -18.44814 -18.11074 -17.50831 -17.29803 -16.87368 -16.53115 -16.36590 -16.27096 -16.18529 -15.91595 -15.45871 -15.20104 -14.98380 -14.84417 -14.60834 -14.33739 -14.16098 -14.04492 -13.73702 -13.70709 -13.36314 -13.33310 -13.14091 -12.89482 -12.81273 -12.79115 -12.65605 -12.33344 -12.23881 -11.90714 -11.88410 -11.82903 -11.59294 -11.19633 -11.02134 -10.82938 -10.64754 -10.10405 -9.62397 -9.32441 -8.16128 -8.04079 -5.38050 0.52335 0.73673 1.39959 1.42420 1.50814 1.66347 2.15940 2.28193 2.48474 2.98077 3.26026 3.38003 3.52789 3.68928 3.94562 3.98512 4.02684 4.08705 4.11412 4.17127 4.24263 4.30879 4.39305 4.51052 4.52716 4.60238 4.60419 4.66273 4.67891 4.76606 4.78725 4.80452 4.89848 4.92375 4.94341 5.07559 5.13726 5.17955 5.22376 5.40459 5.42768 5.69025 5.73015 5.84811 6.01145 6.19223 6.37665 6.56176 6.60161 6.75835 7.06908 7.26859 7.81997 8.01485 9.17148 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.001606 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.023720 B =17426.606131 C =17777.995403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.648 5.648 3 C 0.085 3.915 4 C 0.203 3.797 5 C -0.214 4.214 6 C -0.074 4.074 7 C -0.186 4.186 8 C -0.039 4.039 9 C -0.059 4.059 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.587 6.587 13 N -0.713 5.713 14 C 0.099 3.901 15 C 0.106 3.894 16 H 0.110 0.890 17 O -0.563 6.563 18 C 0.123 3.877 19 N -0.752 5.752 20 C -0.240 4.240 21 H 0.056 0.944 22 C -0.063 4.063 23 N -0.983 5.983 24 Si 0.958 3.042 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.251 1.251 28 C -0.206 4.206 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.416 0.584 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.387 0.613 46 H 0.038 0.962 47 H 0.034 0.966 48 H 0.369 0.631 49 H 0.258 0.742 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.378 35.203 12.308 40.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.360 5.360 3 C -0.057 4.057 4 C 0.101 3.899 5 C -0.236 4.236 6 C -0.093 4.093 7 C -0.206 4.206 8 C -0.040 4.040 9 C -0.097 4.097 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.467 6.467 13 N -0.366 5.366 14 C -0.026 4.026 15 C 0.046 3.954 16 H 0.128 0.872 17 O -0.370 6.370 18 C -0.004 4.004 19 N -0.398 5.398 20 C -0.371 4.371 21 H 0.074 0.926 22 C -0.254 4.254 23 N -0.633 5.633 24 Si 0.785 3.215 25 H -0.203 1.203 26 H -0.223 1.223 27 H -0.175 1.175 28 C -0.228 4.228 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.253 0.747 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.237 0.763 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.203 0.797 49 H 0.067 0.933 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.482 34.879 12.735 40.625 hybrid contribution -0.564 -0.173 -0.776 0.975 sum 15.918 34.706 11.959 40.012 Atomic orbital electron populations 1.21697 0.78838 1.03335 1.01420 1.46534 1.05682 1.03329 1.80419 1.21823 0.97885 0.84277 1.01731 1.18028 0.91777 0.86175 0.93919 1.20956 0.92329 0.99459 1.10816 1.21140 1.00436 0.91620 0.96066 1.21021 0.93619 0.98771 1.07224 1.19622 0.93894 0.93841 0.96627 1.20234 0.99970 0.93485 0.96042 1.21606 1.01956 0.93124 0.99484 1.21243 0.78541 0.86857 0.83562 1.90699 1.59011 1.69370 1.27651 1.45845 1.57249 1.23429 1.10053 1.21810 0.97429 0.86373 0.96963 1.22136 0.94051 0.86777 0.92391 0.87220 1.86524 1.35817 1.61522 1.53088 1.21410 0.97936 0.94011 0.87014 1.42542 1.69595 1.23805 1.03878 1.19049 1.27693 0.97047 0.93310 0.92595 1.25528 1.01131 0.98011 1.00752 1.69892 1.48124 1.21752 1.23558 0.85369 0.77644 0.79517 0.79015 1.20319 1.22272 1.17536 1.20662 0.99924 0.90927 1.11290 0.93429 0.90077 0.91461 0.89941 0.91595 0.92493 0.84620 0.84322 0.85608 0.91065 0.91454 0.87061 0.86771 0.74684 0.90842 0.91175 0.76333 0.94442 0.94849 0.79736 0.93282 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.10 127.77 1.29 2.13 16 2 N -0.65 -8.06 3.41 -747.28 -2.55 -10.61 16 3 C 0.09 0.65 10.63 127.77 1.36 2.00 16 4 C 0.20 3.18 6.53 38.22 0.25 3.43 16 5 C -0.21 -3.00 9.31 22.40 0.21 -2.80 16 6 C -0.07 -1.01 10.04 22.25 0.22 -0.79 16 7 C -0.19 -2.86 9.70 22.29 0.22 -2.64 16 8 C -0.04 -0.64 5.13 -19.89 -0.10 -0.75 16 9 C -0.06 -1.01 4.63 29.85 0.14 -0.87 16 10 C -0.12 -1.75 5.68 29.85 0.17 -1.58 16 11 C 0.51 10.82 7.83 87.66 0.69 11.51 16 12 O -0.59 -17.63 15.98 -3.00 -0.05 -17.68 16 13 N -0.71 -13.44 5.45 -463.04 -2.52 -15.96 16 14 C 0.10 2.24 5.34 86.38 0.46 2.70 16 15 C 0.11 2.72 3.08 30.59 0.09 2.81 16 16 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 17 O -0.56 -14.21 13.03 -148.98 -1.94 -16.15 16 18 C 0.12 4.34 5.90 86.38 0.51 4.85 16 19 N -0.75 -34.49 5.35 -343.46 -1.84 -36.33 16 20 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16 21 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 22 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 23 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 24 Si 0.96 45.59 27.74 68.60 1.90 47.49 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 28 C -0.21 -3.38 8.81 22.40 0.20 -3.18 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.49 8.07 -2.39 -0.02 0.47 16 31 H 0.07 0.65 6.46 -2.39 -0.02 0.63 16 32 H 0.08 0.53 5.32 -2.39 -0.01 0.51 16 33 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.14 1.38 5.75 -2.91 -0.02 1.36 16 36 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 39 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.42 6.12 8.35 -92.71 -0.77 5.34 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.39 7.90 9.05 -74.05 -0.67 7.23 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.37 16.35 5.53 -92.71 -0.51 15.84 16 49 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 50 H 0.12 1.85 6.31 -2.91 -0.02 1.83 16 Total: -1.00 -77.28 409.16 -0.70 -77.98 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -1.05 Total: 33.47 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 7.05 Total: 0.74 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -6.61 Total: -125.85 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.99 Total: -33.83 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -77.28 -0.70 -77.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716098849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.760 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds