Wall clock time and date at job start Tue Mar 31 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34766 * 120.00518 * 2 1 4 4 O 1.21283 * 120.00189 * 184.92146 * 3 2 1 5 5 C 1.50704 * 119.99939 * 4.92615 * 3 2 1 6 6 H 1.08996 * 110.04955 * 338.57940 * 5 3 2 7 7 C 1.54387 * 110.07073 * 100.12342 * 5 3 2 8 8 C 1.54929 * 104.21961 * 142.79127 * 7 5 3 9 9 C 1.54990 * 102.82157 * 322.27880 * 8 7 5 10 10 C 1.53485 * 110.06824 * 217.09350 * 5 3 2 11 11 C 1.52550 * 121.08514 * 24.83277 * 10 5 3 12 12 C 1.52571 * 121.05175 * 96.54565 * 10 5 3 13 13 C 1.46508 * 119.99232 * 180.02562 * 2 1 3 14 14 C 1.53933 * 113.73468 * 38.77052 * 13 2 1 15 15 N 1.48187 * 86.09954 * 221.95258 * 14 13 2 16 16 C 1.46906 * 111.06986 * 137.51827 * 15 14 13 17 17 C 1.50700 * 109.46937 * 90.56801 * 16 15 14 18 18 O 1.21293 * 120.00084 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00240 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00307 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99888 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99711 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00264 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47189 * 89.99673 * 24 22 20 26 26 H 1.48497 * 109.47011 * 210.00054 * 24 22 20 27 27 H 1.48497 * 109.47010 * 329.99869 * 24 22 20 28 28 C 1.47957 * 90.79983 * 24.59911 * 15 14 13 29 29 H 1.09006 * 109.46554 * 84.90094 * 1 2 3 30 30 H 1.08992 * 109.47308 * 204.89935 * 1 2 3 31 31 H 1.09005 * 109.46558 * 324.90766 * 1 2 3 32 32 H 1.08995 * 110.48172 * 261.47569 * 7 5 3 33 33 H 1.08989 * 110.47988 * 23.97724 * 7 5 3 34 34 H 1.08997 * 110.74064 * 203.94340 * 8 7 5 35 35 H 1.08995 * 110.74144 * 80.61229 * 8 7 5 36 36 H 1.09000 * 110.50639 * 278.92208 * 9 8 7 37 37 H 1.08995 * 110.50980 * 156.21535 * 9 8 7 38 38 H 1.08999 * 117.50957 * 217.88118 * 11 10 5 39 39 H 1.09003 * 117.51287 * 2.97138 * 11 10 5 40 40 H 1.08999 * 117.51095 * 356.97105 * 12 10 5 41 41 H 1.09003 * 117.50729 * 142.02296 * 12 10 5 42 42 H 1.09002 * 112.93099 * 170.33158 * 13 2 1 43 43 H 1.08997 * 113.76283 * 336.23614 * 14 13 2 44 44 H 1.09000 * 113.76033 * 107.60100 * 14 13 2 45 45 H 1.08997 * 109.46998 * 210.56659 * 16 15 14 46 46 H 1.08999 * 109.47302 * 330.56930 * 16 15 14 47 47 H 0.97007 * 120.00022 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99929 * 180.02562 * 23 22 20 49 49 H 1.08990 * 113.76393 * 221.08251 * 28 15 14 50 50 H 1.09006 * 113.75862 * 89.71887 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1670 0.0000 4 8 3.3485 1.1689 -0.0901 5 6 1.3898 2.4698 0.1121 6 1 0.3522 2.3315 -0.1918 7 6 1.4528 2.9942 1.5628 8 6 1.5784 4.5305 1.4070 9 6 2.5018 4.6765 0.1708 10 6 2.0573 3.5384 -0.7644 11 6 2.8973 3.1502 -1.9772 12 6 1.5430 3.8378 -2.1693 13 6 2.1974 -1.2689 -0.0006 14 6 1.5556 -2.3543 -0.8835 15 7 1.8636 -3.2923 0.2216 16 6 0.7403 -4.2069 0.4666 17 6 0.9097 -5.4467 -0.3732 18 8 1.8717 -5.5577 -1.1036 19 7 -0.0072 -6.4325 -0.3121 20 6 0.1466 -7.5602 -1.0765 21 1 1.0028 -7.6587 -1.7274 22 6 -0.7990 -8.5763 -1.0137 23 7 -1.8410 -8.4562 -0.2221 24 14 -0.5891 -10.1132 -2.0548 25 1 0.1855 -11.1253 -1.2927 26 1 -1.9243 -10.6659 -2.3963 27 1 0.1386 -9.7700 -3.3029 28 6 1.8623 -2.1783 1.1953 29 1 -0.3633 0.0913 -1.0237 30 1 -0.3633 -0.9321 0.4326 31 1 -0.3632 0.8409 0.5908 32 1 0.5399 2.7388 2.1007 33 1 2.3238 2.5886 2.0773 34 1 2.0421 4.9714 2.2895 35 1 0.6040 4.9801 1.2163 36 1 3.5459 4.5500 0.4570 37 1 2.3504 5.6445 -0.3068 38 1 3.7931 3.7377 -2.1781 39 1 2.9638 2.0909 -2.2255 40 1 0.7188 3.2307 -2.5437 41 1 1.5476 4.8776 -2.4961 42 1 3.2668 -1.1419 -0.1691 43 1 0.4886 -2.2092 -1.0519 44 1 2.1083 -2.5579 -1.8006 45 1 0.7194 -4.4823 1.5210 46 1 -0.1946 -3.7133 0.2013 47 1 -0.7764 -6.3439 0.2723 48 1 -2.5009 -9.1658 -0.1781 49 1 2.6594 -2.2414 1.9360 50 1 0.8850 -1.9816 1.6363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716743518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:01 Heat of formation + Delta-G solvation = -3.558411 kcal Electronic energy + Delta-G solvation = -29248.124867 eV Core-core repulsion = 25277.349923 eV Total energy + Delta-G solvation = -3970.774944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10656 -39.92483 -38.15018 -37.51084 -35.16218 -34.44852 -33.86581 -31.29411 -30.50924 -29.23133 -27.25731 -26.25812 -26.09563 -25.34717 -23.68778 -22.68768 -21.63045 -20.71694 -19.39688 -19.14220 -18.47464 -17.93195 -17.58376 -16.49525 -16.11357 -16.05538 -15.54516 -15.43636 -15.18967 -14.66741 -14.52341 -14.21820 -13.91533 -13.74697 -13.58612 -13.11003 -13.00893 -12.97433 -12.85078 -12.63130 -12.50582 -12.21152 -11.90626 -11.71441 -11.61342 -11.48276 -11.45023 -11.24099 -11.09835 -11.06152 -10.96776 -10.67101 -10.51363 -10.39036 -10.20957 -10.13376 -9.65837 -9.49500 -8.80541 -8.76283 -8.19263 -7.95520 -6.41246 -3.81840 2.41195 2.68339 3.18247 3.26632 3.32703 3.50413 3.90114 3.95760 3.96900 4.21651 4.25796 4.35509 4.50005 4.56251 4.64943 4.74087 4.78862 4.85974 4.88613 4.96638 4.97143 5.13293 5.18693 5.24245 5.29459 5.33653 5.37163 5.41791 5.44339 5.44811 5.55804 5.61622 5.63128 5.64945 5.68819 5.72870 5.77542 5.84239 5.89121 5.93137 5.97258 6.08321 6.23539 6.35530 6.52905 7.09052 7.20868 7.55818 8.01509 8.06815 8.62861 9.19275 9.55175 10.07778 10.76671 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.001997 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.556450 B =14019.428757 C =14183.881703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.522 3.478 4 O -0.527 6.527 5 C -0.080 4.080 6 H 0.094 0.906 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.086 4.086 10 C -0.115 4.115 11 C -0.151 4.151 12 C -0.173 4.173 13 C 0.116 3.884 14 C 0.002 3.998 15 N -0.444 5.444 16 C 0.013 3.987 17 C 0.446 3.554 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.013 4.013 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 27.393 4.033 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C 0.310 3.690 4 O -0.403 6.403 5 C -0.101 4.101 6 H 0.112 0.888 7 C -0.145 4.145 8 C -0.157 4.157 9 C -0.124 4.124 10 C -0.116 4.116 11 C -0.188 4.188 12 C -0.210 4.210 13 C 0.012 3.988 14 C -0.127 4.127 15 N -0.167 5.167 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.457 6.457 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.143 4.143 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.147 0.853 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.074 0.926 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.778 26.714 3.469 26.997 hybrid contribution -1.541 -0.594 -0.015 1.651 sum 0.237 26.120 3.454 26.348 Atomic orbital electron populations 1.21845 0.79752 1.03370 1.02153 1.47988 1.06812 1.05871 1.73525 1.20597 0.88062 0.84859 0.75498 1.90697 1.14075 1.87077 1.48423 1.21513 0.99777 0.91565 0.97281 0.88833 1.22272 1.02633 0.96077 0.93539 1.22451 0.99940 0.95254 0.98042 1.21870 0.99700 0.96241 0.94551 1.21435 1.03927 0.97301 0.88919 1.22895 0.94274 1.01507 1.00122 1.23095 0.98393 1.01684 0.97802 1.23161 0.98916 0.80649 0.96034 1.24459 1.00069 0.90448 0.97741 1.68374 1.37468 1.08099 1.02715 1.22457 0.92832 0.95459 1.01128 1.19666 0.85340 0.85046 0.86860 1.90532 1.31737 1.80519 1.42872 1.41873 1.22464 1.16169 1.39976 1.19697 1.08672 0.93823 1.20483 0.87960 1.25250 0.95361 0.99590 0.97820 1.69608 1.11798 1.34748 1.38371 0.85860 0.77426 0.81034 0.79996 1.20399 1.20959 1.19436 1.24490 1.01805 0.91178 0.96822 0.92185 0.90619 0.90829 0.90885 0.90780 0.91076 0.91138 0.90847 0.91486 0.88736 0.88570 0.88927 0.88640 0.85320 0.91003 0.88463 0.89314 0.92576 0.77590 0.91930 0.88785 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.53 59.85 0.51 1.05 16 2 N -0.61 -6.44 3.09 -175.27 -0.54 -6.98 16 3 C 0.52 5.98 5.72 -10.99 -0.06 5.91 16 4 O -0.53 -7.91 14.54 5.56 0.08 -7.83 16 5 C -0.08 -0.68 2.49 -90.79 -0.23 -0.90 16 6 H 0.09 0.64 6.11 -51.93 -0.32 0.32 16 7 C -0.11 -0.78 6.36 -24.99 -0.16 -0.94 16 8 C -0.12 -0.73 6.91 -24.66 -0.17 -0.90 16 9 C -0.09 -0.64 6.58 -25.23 -0.17 -0.80 16 10 C -0.12 -0.99 2.06 -154.25 -0.32 -1.31 16 11 C -0.15 -1.48 8.96 -26.92 -0.24 -1.72 16 12 C -0.17 -1.33 10.23 -26.91 -0.28 -1.60 16 13 C 0.12 1.49 4.41 -69.64 -0.31 1.18 16 14 C 0.00 0.04 7.38 -2.63 -0.02 0.02 16 15 N -0.44 -7.41 5.65 -239.71 -1.35 -8.77 16 16 C 0.01 0.24 5.28 -4.97 -0.03 0.21 16 17 C 0.45 10.68 7.83 -10.99 -0.09 10.59 16 18 O -0.57 -16.02 16.01 5.55 0.09 -15.93 16 19 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 24 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.01 -0.16 7.45 -2.76 -0.02 -0.18 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.57 6.16 -51.93 -0.32 0.25 16 31 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.65 7.85 -51.94 -0.41 0.24 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.14 6.86 -51.93 -0.36 0.78 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.13 1.89 7.20 -51.93 -0.37 1.52 16 43 H 0.07 0.94 6.06 -51.93 -0.31 0.63 16 44 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.07 0.75 6.70 -51.93 -0.35 0.40 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -33.76 395.61 -9.99 -43.75 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.06 Total: 9.43 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.81 Total: 2.57 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -1.23 Total: -54.12 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.76 -9.99 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.193 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds