Wall clock time and date at job start Tue Mar 31 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99828 * 2 1 4 4 O 1.21279 * 119.99584 * 175.10835 * 3 2 1 5 5 C 1.50699 * 120.00173 * 355.11543 * 3 2 1 6 6 H 1.09003 * 110.05216 * 23.24790 * 5 3 2 7 7 C 1.54377 * 110.07020 * 261.76071 * 5 3 2 8 8 C 1.54916 * 104.22595 * 217.21961 * 7 5 3 9 9 C 1.54991 * 102.82263 * 37.71810 * 8 7 5 10 10 C 1.53481 * 110.07152 * 144.73283 * 5 3 2 11 11 C 1.52558 * 121.08791 * 335.14751 * 10 5 3 12 12 C 1.52571 * 121.05225 * 263.43469 * 10 5 3 13 13 C 1.46497 * 120.00117 * 180.02562 * 2 1 3 14 14 C 1.53515 * 114.17075 * 59.99372 * 13 2 1 15 15 N 1.47481 * 87.93432 * 220.33037 * 14 13 2 16 16 C 1.46897 * 110.99909 * 138.70492 * 15 14 13 17 17 C 1.50695 * 109.47091 * 170.00230 * 16 15 14 18 18 O 1.21293 * 120.00040 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99969 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99966 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00209 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00084 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99855 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99764 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47068 * 90.00062 * 24 22 20 26 26 H 1.48503 * 109.46837 * 209.99755 * 24 22 20 27 27 H 1.48500 * 109.47320 * 330.00016 * 24 22 20 28 28 C 1.47480 * 87.83507 * 27.01086 * 15 14 13 29 29 H 1.09007 * 109.46880 * 275.20896 * 1 2 3 30 30 H 1.08997 * 109.47144 * 35.20461 * 1 2 3 31 31 H 1.09001 * 109.47366 * 155.21182 * 1 2 3 32 32 H 1.09007 * 110.48102 * 335.90506 * 7 5 3 33 33 H 1.09003 * 110.48137 * 98.53105 * 7 5 3 34 34 H 1.08999 * 110.74776 * 156.05117 * 8 7 5 35 35 H 1.08999 * 110.74414 * 279.38199 * 8 7 5 36 36 H 1.09003 * 110.51034 * 81.07222 * 9 8 7 37 37 H 1.08998 * 110.51257 * 203.65029 * 9 8 7 38 38 H 1.09006 * 117.50894 * 357.02866 * 11 10 5 39 39 H 1.08995 * 117.51300 * 142.11447 * 11 10 5 40 40 H 1.09001 * 117.51216 * 217.94083 * 12 10 5 41 41 H 1.09005 * 117.50958 * 2.98518 * 12 10 5 42 42 H 1.09001 * 113.25748 * 192.95099 * 13 2 1 43 43 H 1.09008 * 113.47108 * 105.56297 * 14 13 2 44 44 H 1.08996 * 113.53473 * 335.10879 * 14 13 2 45 45 H 1.09004 * 109.47344 * 290.00102 * 16 15 14 46 46 H 1.09000 * 109.47114 * 50.00047 * 16 15 14 47 47 H 0.97006 * 120.00090 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99551 * 179.97438 * 23 22 20 49 49 H 1.09004 * 113.47791 * 87.75455 * 28 15 14 50 50 H 1.08998 * 113.47713 * 218.22088 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3483 1.1691 0.0896 5 6 1.3895 2.4700 -0.1111 6 1 0.3605 2.3390 0.2240 7 6 1.4115 2.9709 -1.5712 8 6 1.5451 4.5091 -1.4439 9 6 2.5044 4.6724 -0.2376 10 6 2.0836 3.5503 0.7295 11 6 2.9563 3.1789 1.9244 12 6 1.6095 3.8730 2.1433 13 6 2.1975 -1.2687 -0.0006 14 6 1.9053 -2.1627 -1.2138 15 7 1.9118 -3.3179 -0.2969 16 6 0.8295 -4.2557 -0.6240 17 6 1.0128 -5.5281 0.1623 18 8 1.9528 -5.6427 0.9202 19 7 0.1327 -6.5393 0.0226 20 6 0.2997 -7.6971 0.7375 21 1 1.1362 -7.7988 1.4130 22 6 -0.6073 -8.7398 0.5930 23 7 -0.4475 -9.8494 1.2788 24 14 -2.0538 -8.5642 -0.5759 25 1 -1.6622 -9.0479 -1.9242 26 1 -3.1964 -9.3691 -0.0738 27 1 -2.4528 -7.1362 -0.6588 28 6 1.5044 -2.3951 0.7790 29 1 -0.3633 0.0933 1.0235 30 1 -0.3633 0.8397 -0.5924 31 1 -0.3634 -0.9330 -0.4309 32 1 2.2676 2.5565 -2.1038 33 1 0.4827 2.7094 -2.0782 34 1 1.9839 4.9345 -2.3464 35 1 0.5776 4.9644 -1.2323 36 1 3.5395 4.5383 -0.5519 37 1 2.3708 5.6493 0.2271 38 1 3.0274 2.1234 2.1873 39 1 3.8587 3.7670 2.0910 40 1 1.6259 4.9177 2.4538 41 1 0.7941 3.2744 2.5498 42 1 3.2579 -1.1535 0.2239 43 1 2.7149 -2.1828 -1.9434 44 1 0.9327 -1.9749 -1.6687 45 1 -0.1302 -3.8062 -0.3692 46 1 0.8537 -4.4808 -1.6902 47 1 -0.6185 -6.4481 -0.5844 48 1 -1.0809 -10.5771 1.1782 49 1 0.4246 -2.2685 0.8568 50 1 1.9742 -2.6121 1.7382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716743519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:04 Heat of formation + Delta-G solvation = 6.733177 kcal Electronic energy + Delta-G solvation = -29269.344420 eV Core-core repulsion = 25299.015753 eV Total energy + Delta-G solvation = -3970.328667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22277 -40.12423 -38.27478 -37.68032 -35.27040 -34.48166 -33.92703 -31.69881 -30.70540 -29.34982 -27.35983 -26.31482 -25.99678 -25.45199 -23.61476 -22.70831 -21.66260 -20.75933 -19.53634 -19.28193 -18.56462 -18.35033 -17.63064 -16.58475 -16.13560 -16.10277 -15.61709 -15.50114 -15.21477 -14.90884 -14.62303 -14.42237 -13.86207 -13.73585 -13.46675 -13.21504 -13.04203 -12.99565 -12.86970 -12.72051 -12.58968 -12.43202 -12.18572 -11.94838 -11.75572 -11.64325 -11.48296 -11.27333 -11.21714 -11.09570 -10.95110 -10.81402 -10.61182 -10.54127 -10.15851 -9.97779 -9.70943 -9.56786 -8.94860 -8.83269 -8.35659 -8.17821 -6.30877 -3.82270 2.36384 2.61521 2.99900 3.05251 3.13376 3.47563 3.72910 3.92484 3.97689 4.09458 4.21565 4.28500 4.39417 4.52490 4.59836 4.65388 4.72752 4.75645 4.81847 4.82930 4.92930 5.04101 5.11982 5.18450 5.21866 5.22912 5.33123 5.35704 5.41052 5.41475 5.45848 5.47871 5.52739 5.59699 5.63845 5.65850 5.75568 5.80162 5.82152 5.90298 5.90536 5.94279 5.98150 6.26764 6.37003 6.98359 7.14339 7.58032 7.96587 8.14432 8.60570 8.95796 9.42421 9.84213 10.82397 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.002083 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.404793 B =13438.219048 C =13714.493272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.522 3.478 4 O -0.525 6.525 5 C -0.079 4.079 6 H 0.093 0.907 7 C -0.107 4.107 8 C -0.120 4.120 9 C -0.086 4.086 10 C -0.116 4.116 11 C -0.150 4.150 12 C -0.173 4.173 13 C 0.118 3.882 14 C -0.019 4.019 15 N -0.433 5.433 16 C 0.009 3.991 17 C 0.455 3.545 18 O -0.554 6.554 19 N -0.594 5.594 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 C -0.006 4.006 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.072 0.928 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 30.994 -6.606 31.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.340 5.340 3 C 0.310 3.690 4 O -0.400 6.400 5 C -0.101 4.101 6 H 0.112 0.888 7 C -0.145 4.145 8 C -0.157 4.157 9 C -0.124 4.124 10 C -0.116 4.116 11 C -0.187 4.187 12 C -0.210 4.210 13 C 0.014 3.986 14 C -0.149 4.149 15 N -0.155 5.155 16 C -0.124 4.124 17 C 0.240 3.760 18 O -0.435 6.435 19 N -0.234 5.234 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.136 4.136 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.151 0.849 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.157 30.220 -5.912 30.815 hybrid contribution -2.333 0.064 -1.006 2.541 sum -3.490 30.284 -6.918 31.260 Atomic orbital electron populations 1.21849 0.79772 1.03318 1.02196 1.47893 1.06754 1.05763 1.73627 1.20597 0.88066 0.84806 0.75517 1.90702 1.14054 1.87049 1.48234 1.21501 0.99640 0.91490 0.97446 0.88844 1.22275 1.02577 0.96227 0.93453 1.22452 0.99785 0.95198 0.98271 1.21889 0.99602 0.96401 0.94477 1.21451 1.03831 0.97266 0.89073 1.22902 0.94039 1.01572 1.00191 1.23096 0.98787 1.01586 0.97524 1.22777 0.98685 0.80618 0.96511 1.24409 1.01972 0.91149 0.97371 1.68780 1.36867 1.06105 1.03760 1.22530 0.93520 0.95221 1.01094 1.19533 0.85118 0.84665 0.86679 1.90578 1.31759 1.81379 1.39767 1.42214 1.25090 1.15153 1.40952 1.19427 1.12676 0.89476 1.21645 0.86298 1.25042 0.98121 0.95368 0.97736 1.69625 1.37120 1.04865 1.40603 0.86665 0.82829 0.78213 0.81595 1.19628 1.20199 1.19639 1.24371 0.99441 0.90854 0.98898 0.92128 0.90822 0.90674 0.90789 0.90875 0.91065 0.91137 0.90851 0.91476 0.88505 0.88730 0.88644 0.88942 0.84907 0.89055 0.91269 0.92274 0.89129 0.79832 0.91639 0.90980 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 8.61 59.85 0.52 1.00 16 2 N -0.61 -6.03 3.11 -173.61 -0.54 -6.57 16 3 C 0.52 5.71 5.79 -10.99 -0.06 5.65 16 4 O -0.53 -7.63 14.41 5.56 0.08 -7.55 16 5 C -0.08 -0.63 2.44 -90.80 -0.22 -0.86 16 6 H 0.09 0.59 6.21 -51.93 -0.32 0.27 16 7 C -0.11 -0.73 6.36 -25.00 -0.16 -0.89 16 8 C -0.12 -0.69 6.91 -24.67 -0.17 -0.86 16 9 C -0.09 -0.61 6.59 -25.16 -0.17 -0.77 16 10 C -0.12 -0.96 2.07 -154.19 -0.32 -1.28 16 11 C -0.15 -1.43 8.94 -26.91 -0.24 -1.67 16 12 C -0.17 -1.27 10.24 -26.90 -0.28 -1.55 16 13 C 0.12 1.44 4.57 -67.71 -0.31 1.13 16 14 C -0.02 -0.22 7.23 -7.55 -0.05 -0.28 16 15 N -0.43 -6.91 5.82 -246.10 -1.43 -8.35 16 16 C 0.01 0.14 5.30 -4.98 -0.03 0.12 16 17 C 0.45 10.46 7.85 -10.99 -0.09 10.37 16 18 O -0.55 -15.32 16.01 5.55 0.09 -15.23 16 19 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.10 5.50 -17.46 -0.10 1.01 16 23 N -0.88 -25.87 13.96 55.50 0.77 -25.09 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 28 C -0.01 -0.08 7.11 -7.55 -0.05 -0.13 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.07 0.35 6.48 -51.93 -0.34 0.01 16 31 H 0.07 0.49 5.99 -51.93 -0.31 0.18 16 32 H 0.07 0.62 7.85 -51.92 -0.41 0.21 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 38 H 0.10 1.12 6.80 -51.93 -0.35 0.76 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.13 1.88 7.26 -51.93 -0.38 1.50 16 43 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.07 0.68 6.82 -51.93 -0.35 0.33 16 45 H 0.06 0.81 7.30 -51.93 -0.38 0.43 16 46 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 47 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.07 0.86 5.72 -51.93 -0.30 0.56 16 50 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -35.14 392.02 -9.77 -44.91 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.00 Total: 9.48 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.88 Total: 2.19 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -1.25 Total: -54.26 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.14 -9.77 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.639 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds