Wall clock time and date at job start Tue Mar 31 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99828 * 2 1 4 4 O 1.21279 * 119.99584 * 175.10835 * 3 2 1 5 5 C 1.50699 * 120.00173 * 355.11543 * 3 2 1 6 6 H 1.09003 * 110.05216 * 23.24790 * 5 3 2 7 7 C 1.54377 * 110.07020 * 261.76071 * 5 3 2 8 8 C 1.54916 * 104.22595 * 217.21961 * 7 5 3 9 9 C 1.54991 * 102.82263 * 37.71810 * 8 7 5 10 10 C 1.53481 * 110.07152 * 144.73283 * 5 3 2 11 11 C 1.52558 * 121.08791 * 335.14751 * 10 5 3 12 12 C 1.52571 * 121.05225 * 263.43469 * 10 5 3 13 13 C 1.46497 * 120.00117 * 180.02562 * 2 1 3 14 14 C 1.53515 * 114.17075 * 59.99372 * 13 2 1 15 15 N 1.47481 * 87.93432 * 220.33037 * 14 13 2 16 16 C 1.46897 * 110.99909 * 138.70492 * 15 14 13 17 17 C 1.50695 * 109.47091 * 170.00230 * 16 15 14 18 18 O 1.21293 * 120.00040 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99969 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99966 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00209 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00084 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99855 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99764 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47068 * 90.00062 * 24 22 20 26 26 H 1.48503 * 109.46837 * 209.99755 * 24 22 20 27 27 H 1.48500 * 109.47320 * 330.00016 * 24 22 20 28 28 C 1.47480 * 87.83507 * 27.01086 * 15 14 13 29 29 H 1.09007 * 109.46880 * 275.20896 * 1 2 3 30 30 H 1.08997 * 109.47144 * 35.20461 * 1 2 3 31 31 H 1.09001 * 109.47366 * 155.21182 * 1 2 3 32 32 H 1.09007 * 110.48102 * 335.90506 * 7 5 3 33 33 H 1.09003 * 110.48137 * 98.53105 * 7 5 3 34 34 H 1.08999 * 110.74776 * 156.05117 * 8 7 5 35 35 H 1.08999 * 110.74414 * 279.38199 * 8 7 5 36 36 H 1.09003 * 110.51034 * 81.07222 * 9 8 7 37 37 H 1.08998 * 110.51257 * 203.65029 * 9 8 7 38 38 H 1.09006 * 117.50894 * 357.02866 * 11 10 5 39 39 H 1.08995 * 117.51300 * 142.11447 * 11 10 5 40 40 H 1.09001 * 117.51216 * 217.94083 * 12 10 5 41 41 H 1.09005 * 117.50958 * 2.98518 * 12 10 5 42 42 H 1.09001 * 113.25748 * 192.95099 * 13 2 1 43 43 H 1.09008 * 113.47108 * 105.56297 * 14 13 2 44 44 H 1.08996 * 113.53473 * 335.10879 * 14 13 2 45 45 H 1.09004 * 109.47344 * 290.00102 * 16 15 14 46 46 H 1.09000 * 109.47114 * 50.00047 * 16 15 14 47 47 H 0.97006 * 120.00090 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99551 * 179.97438 * 23 22 20 49 49 H 1.09004 * 113.47791 * 87.75455 * 28 15 14 50 50 H 1.08998 * 113.47713 * 218.22088 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3483 1.1691 0.0896 5 6 1.3895 2.4700 -0.1111 6 1 0.3605 2.3390 0.2240 7 6 1.4115 2.9709 -1.5712 8 6 1.5451 4.5091 -1.4439 9 6 2.5044 4.6724 -0.2376 10 6 2.0836 3.5503 0.7295 11 6 2.9563 3.1789 1.9244 12 6 1.6095 3.8730 2.1433 13 6 2.1975 -1.2687 -0.0006 14 6 1.9053 -2.1627 -1.2138 15 7 1.9118 -3.3179 -0.2969 16 6 0.8295 -4.2557 -0.6240 17 6 1.0128 -5.5281 0.1623 18 8 1.9528 -5.6427 0.9202 19 7 0.1327 -6.5393 0.0226 20 6 0.2997 -7.6971 0.7375 21 1 1.1362 -7.7988 1.4130 22 6 -0.6073 -8.7398 0.5930 23 7 -0.4475 -9.8494 1.2788 24 14 -2.0538 -8.5642 -0.5759 25 1 -1.6622 -9.0479 -1.9242 26 1 -3.1964 -9.3691 -0.0738 27 1 -2.4528 -7.1362 -0.6588 28 6 1.5044 -2.3951 0.7790 29 1 -0.3633 0.0933 1.0235 30 1 -0.3633 0.8397 -0.5924 31 1 -0.3634 -0.9330 -0.4309 32 1 2.2676 2.5565 -2.1038 33 1 0.4827 2.7094 -2.0782 34 1 1.9839 4.9345 -2.3464 35 1 0.5776 4.9644 -1.2323 36 1 3.5395 4.5383 -0.5519 37 1 2.3708 5.6493 0.2271 38 1 3.0274 2.1234 2.1873 39 1 3.8587 3.7670 2.0910 40 1 1.6259 4.9177 2.4538 41 1 0.7941 3.2744 2.5498 42 1 3.2579 -1.1535 0.2239 43 1 2.7149 -2.1828 -1.9434 44 1 0.9327 -1.9749 -1.6687 45 1 -0.1302 -3.8062 -0.3692 46 1 0.8537 -4.4808 -1.6902 47 1 -0.6185 -6.4481 -0.5844 48 1 -1.0809 -10.5771 1.1782 49 1 0.4246 -2.2685 0.8568 50 1 1.9742 -2.6121 1.7382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716743519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:03 Heat of formation + Delta-G solvation = -20.205648 kcal Electronic energy + Delta-G solvation = -29270.512575 eV Core-core repulsion = 25299.015753 eV Total energy + Delta-G solvation = -3971.496822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11665 -41.07467 -39.85542 -38.67208 -36.20149 -35.90964 -35.05310 -33.77078 -31.82460 -30.13437 -28.10486 -27.37946 -26.93610 -26.65268 -25.03838 -23.36756 -22.41170 -21.49556 -21.25152 -20.44450 -20.11427 -19.21341 -18.47943 -17.80481 -17.51073 -16.97544 -16.74972 -16.43111 -16.19450 -16.18507 -15.74006 -15.49646 -15.12410 -14.86601 -14.63656 -14.40212 -14.16660 -14.04570 -13.80683 -13.75380 -13.54900 -13.47114 -13.19534 -13.08830 -12.82616 -12.48550 -12.41978 -12.35015 -12.07613 -11.96181 -11.95264 -11.90854 -11.79895 -11.60399 -11.51287 -11.16153 -10.87271 -10.49795 -10.44322 -10.25361 -9.81596 -9.65190 -8.41403 -6.02959 1.29293 1.36500 1.45199 1.55867 1.82251 1.95734 2.23473 2.66592 2.85582 3.13393 3.23741 3.32489 3.39307 3.63347 3.69692 3.75531 3.94047 4.02106 4.05481 4.10222 4.18936 4.24736 4.27493 4.30324 4.32066 4.42070 4.42847 4.58990 4.67933 4.71829 4.74574 4.77552 4.79874 4.89029 4.92709 4.94555 5.01277 5.07660 5.12247 5.18481 5.23348 5.27150 5.29535 5.42585 5.46739 5.53914 5.88102 5.98873 6.37561 6.59498 6.88235 7.16659 7.39317 7.98140 8.76532 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.002083 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.404793 B =13438.219048 C =13714.493272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.603 5.603 3 C 0.516 3.484 4 O -0.573 6.573 5 C -0.075 4.075 6 H 0.120 0.880 7 C -0.106 4.106 8 C -0.113 4.113 9 C -0.089 4.089 10 C -0.120 4.120 11 C -0.177 4.177 12 C -0.151 4.151 13 C 0.125 3.875 14 C -0.001 4.001 15 N -0.478 5.478 16 C 0.023 3.977 17 C 0.450 3.550 18 O -0.613 6.613 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.050 0.950 22 C -0.019 4.019 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.226 1.226 28 C -0.004 4.004 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.391 0.609 48 H 0.279 0.721 49 H 0.100 0.900 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 34.030 -9.735 36.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.335 5.335 3 C 0.306 3.694 4 O -0.452 6.452 5 C -0.096 4.096 6 H 0.137 0.863 7 C -0.144 4.144 8 C -0.150 4.150 9 C -0.127 4.127 10 C -0.121 4.121 11 C -0.214 4.214 12 C -0.188 4.188 13 C 0.020 3.980 14 C -0.131 4.131 15 N -0.201 5.201 16 C -0.109 4.109 17 C 0.238 3.762 18 O -0.497 6.497 19 N -0.234 5.234 20 C -0.459 4.459 21 H 0.069 0.931 22 C -0.217 4.217 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.149 1.149 28 C -0.133 4.133 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.140 0.860 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.785 33.290 -9.057 34.982 hybrid contribution -0.730 -0.903 0.102 1.166 sum -6.515 32.387 -8.955 34.228 Atomic orbital electron populations 1.22183 0.77147 1.05211 1.03517 1.47941 1.08236 1.04455 1.72888 1.21238 0.87720 0.85982 0.74448 1.90686 1.16374 1.87733 1.50403 1.21601 1.00221 0.89354 0.98460 0.86256 1.22310 1.02964 0.96771 0.92332 1.22461 1.00261 0.94555 0.97756 1.21924 0.99044 0.96613 0.95080 1.21636 1.03182 0.97770 0.89482 1.22784 0.95452 1.00166 1.02999 1.23160 0.96988 1.02191 0.96467 1.22339 0.97287 0.81699 0.96655 1.24375 1.03791 0.88475 0.96425 1.68691 1.37703 1.07879 1.05799 1.22474 0.95525 0.91632 1.01278 1.20931 0.83357 0.86245 0.85660 1.90557 1.34064 1.82798 1.42268 1.42015 1.26276 1.14013 1.41051 1.18979 1.11896 0.92459 1.22535 0.93144 1.26197 1.01824 0.93969 0.99705 1.69821 1.38937 1.06184 1.42746 0.85315 0.76871 0.80813 0.78166 1.18211 1.20037 1.14947 1.24381 1.00819 0.90949 0.97170 0.91338 0.87992 0.89544 0.92983 0.88237 0.90374 0.89222 0.92740 0.90148 0.91356 0.89238 0.87051 0.88113 0.88203 0.89243 0.87621 0.88115 0.85972 0.77363 0.91147 0.88208 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 8.61 127.77 1.10 1.65 16 2 N -0.60 -10.88 3.11 -821.57 -2.56 -13.43 16 3 C 0.52 10.97 5.79 87.66 0.51 11.48 16 4 O -0.57 -17.60 14.41 -3.03 -0.04 -17.64 16 5 C -0.08 -1.02 2.44 -10.91 -0.03 -1.05 16 6 H 0.12 0.99 6.21 -2.39 -0.01 0.98 16 7 C -0.11 -1.12 6.36 31.72 0.20 -0.92 16 8 C -0.11 -0.96 6.91 31.93 0.22 -0.74 16 9 C -0.09 -1.12 6.59 31.61 0.21 -0.92 16 10 C -0.12 -1.83 2.07 -51.97 -0.11 -1.94 16 11 C -0.18 -3.50 8.94 30.48 0.27 -3.22 16 12 C -0.15 -1.96 10.24 30.48 0.31 -1.64 16 13 C 0.13 3.00 4.57 45.45 0.21 3.21 16 14 C 0.00 -0.03 7.23 83.57 0.60 0.58 16 15 N -0.48 -14.66 5.82 -932.51 -5.43 -20.09 16 16 C 0.02 0.67 5.30 85.56 0.45 1.12 16 17 C 0.45 20.63 7.85 87.66 0.69 21.32 16 18 O -0.61 -35.59 16.01 -3.07 -0.05 -35.64 16 19 N -0.59 -27.83 5.09 -306.99 -1.56 -29.39 16 20 C -0.33 -19.51 10.16 84.04 0.85 -18.66 16 21 H 0.05 3.60 7.39 -2.91 -0.02 3.57 16 22 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 23 N -0.94 -56.87 13.96 21.67 0.30 -56.56 16 24 Si 0.97 38.14 27.74 68.60 1.90 40.04 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 28 C 0.00 -0.09 7.11 83.57 0.59 0.50 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.10 0.39 6.48 -2.39 -0.02 0.37 16 31 H 0.09 0.63 5.99 -2.39 -0.01 0.62 16 32 H 0.05 0.79 7.85 -2.38 -0.02 0.78 16 33 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.78 8.11 -2.39 -0.02 0.76 16 38 H 0.07 1.73 6.80 -2.38 -0.02 1.71 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.10 3.06 7.26 -2.39 -0.02 3.04 16 43 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.11 1.50 6.82 -2.39 -0.02 1.48 16 45 H 0.10 2.18 7.30 -2.38 -0.02 2.16 16 46 H 0.12 2.88 8.08 -2.39 -0.02 2.87 16 47 H 0.39 14.80 5.76 -92.70 -0.53 14.27 16 48 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.10 2.06 5.72 -2.38 -0.01 2.05 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -87.45 392.02 -0.52 -87.97 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.36 Total: 34.54 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.56 Total: 10.20 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -9.25 Total: -119.47 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.09 Total: -53.28 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -87.45 -0.52 -87.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.763 kcal (2) G-P(sol) polarization free energy of solvation -87.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds