Wall clock time and date at job start Tue Mar 31 2020 18:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 120.00509 * 2 1 4 4 O 1.21279 * 120.00278 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99398 * 359.97438 * 3 2 1 6 6 C 1.53006 * 109.46817 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.35794 * 54.99821 * 6 5 3 8 8 C 1.50064 * 109.35671 * 295.27663 * 6 5 3 9 9 C 1.29446 * 124.07761 * 222.64228 * 8 6 5 10 10 C 1.50063 * 124.07451 * 0.48579 * 9 8 6 11 11 C 1.53025 * 110.14722 * 342.87647 * 10 9 8 12 12 C 1.53026 * 109.35660 * 174.72536 * 6 5 3 13 13 C 1.46503 * 120.00069 * 179.97438 * 2 1 3 14 14 C 1.53937 * 113.72727 * 42.60116 * 13 2 1 15 15 N 1.48188 * 86.10328 * 221.95544 * 14 13 2 16 16 C 1.46897 * 111.07213 * 137.51978 * 15 14 13 17 17 C 1.50699 * 109.46913 * 90.57167 * 16 15 14 18 18 O 1.21286 * 120.00266 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99692 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99827 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00040 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00023 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99817 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99896 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47184 * 90.00257 * 24 22 20 26 26 H 1.48497 * 109.47175 * 210.00155 * 24 22 20 27 27 H 1.48501 * 109.47277 * 330.00275 * 24 22 20 28 28 C 1.47970 * 90.79415 * 24.60320 * 15 14 13 29 29 H 1.09004 * 109.47373 * 265.02304 * 1 2 3 30 30 H 1.08995 * 109.47638 * 145.01540 * 1 2 3 31 31 H 1.09006 * 109.46923 * 25.01743 * 1 2 3 32 32 H 1.09000 * 109.47600 * 300.00115 * 5 3 2 33 33 H 1.08993 * 109.47392 * 60.00739 * 5 3 2 34 34 H 1.08006 * 117.96625 * 42.66265 * 8 6 5 35 35 H 1.08001 * 117.95991 * 180.47235 * 9 8 6 36 36 H 1.09010 * 109.35621 * 103.07994 * 10 9 8 37 37 H 1.08997 * 109.35923 * 222.80155 * 10 9 8 38 38 H 1.09004 * 109.63794 * 169.11850 * 11 10 9 39 39 H 1.08996 * 109.64157 * 289.53503 * 11 10 9 40 40 H 1.08999 * 109.64058 * 289.32363 * 12 6 5 41 41 H 1.08997 * 109.64113 * 49.96015 * 12 6 5 42 42 H 1.08998 * 112.94169 * 174.16337 * 13 2 1 43 43 H 1.09001 * 113.76125 * 336.23791 * 14 13 2 44 44 H 1.09004 * 113.75878 * 107.60662 * 14 13 2 45 45 H 1.09000 * 109.47433 * 210.56893 * 16 15 14 46 46 H 1.09006 * 109.47424 * 330.57133 * 16 15 14 47 47 H 0.96998 * 120.00434 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99387 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.75494 * 221.08705 * 28 15 14 50 50 H 1.08999 * 113.85806 * 89.73462 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3798 3.6352 -0.0011 7 1 3.0629 3.5261 -0.8434 8 6 3.1625 3.6209 1.2792 9 6 3.4403 4.6790 1.9712 10 6 3.0096 6.0665 1.5954 11 6 2.5930 6.1086 0.1236 12 6 1.6167 4.9549 -0.1344 13 6 2.1975 -1.2687 0.0006 14 6 1.6089 -2.3243 -0.9529 15 7 1.8533 -3.2981 0.1370 16 6 0.7187 -4.2191 0.2866 17 6 0.9376 -5.4311 -0.5819 18 8 1.9399 -5.5187 -1.2592 19 7 0.0191 -6.4171 -0.6068 20 6 0.2180 -7.5194 -1.3973 21 1 1.1105 -7.5975 -2.0004 22 6 -0.7287 -8.5362 -1.4225 23 7 -0.5378 -9.5931 -2.1799 24 14 -2.2720 -8.4016 -0.3789 25 1 -3.3399 -7.7263 -1.1591 26 1 -2.7270 -9.7607 0.0096 27 1 -1.9761 -7.6107 0.8427 28 6 1.7944 -2.2163 1.1448 29 1 -0.3634 -0.0892 1.0238 30 1 -0.3634 -0.8419 -0.5892 31 1 -0.3633 0.9313 -0.4346 32 1 0.7591 2.5299 -0.8908 33 1 0.7586 2.5303 0.8891 34 1 3.5163 2.6687 1.6459 35 1 4.0179 4.5554 2.8754 36 1 2.1660 6.3641 2.2184 37 1 3.8376 6.7573 1.7545 38 1 2.1036 7.0585 -0.0916 39 1 3.4733 5.9983 -0.5096 40 1 1.2082 5.0418 -1.1412 41 1 0.8085 4.9862 0.5963 42 1 3.2747 -1.1374 -0.1016 43 1 0.5531 -2.1728 -1.1779 44 1 2.2139 -2.4984 -1.8427 45 1 0.6369 -4.5288 1.3285 46 1 -0.1999 -3.7163 -0.0161 47 1 -0.7827 -6.3469 -0.0654 48 1 -1.1989 -10.3027 -2.1978 49 1 2.5475 -2.3043 1.9279 50 1 0.7939 -2.0320 1.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716743565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:40 Heat of formation + Delta-G solvation = -14.305320 kcal Electronic energy + Delta-G solvation = -28598.583019 eV Core-core repulsion = 24627.342055 eV Total energy + Delta-G solvation = -3971.240965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.93135 -39.69764 -38.43842 -37.79499 -35.18242 -33.92741 -33.03186 -31.68520 -31.30903 -30.27803 -27.78750 -27.32381 -26.19872 -25.42581 -23.65588 -22.66962 -22.32711 -20.15178 -19.45412 -19.05742 -18.35836 -18.26089 -17.43965 -16.61386 -16.31461 -16.17813 -15.95609 -15.31775 -14.93920 -14.77226 -14.60581 -14.28177 -14.18321 -13.54912 -13.45701 -13.26217 -13.17473 -13.03701 -12.95984 -12.76800 -12.63663 -12.51975 -12.31879 -12.29495 -12.16073 -11.90438 -11.63154 -11.22978 -11.22066 -11.09657 -10.87659 -10.74011 -10.60871 -10.45510 -9.97520 -9.88011 -9.56452 -9.23212 -8.88279 -8.86127 -8.32421 -8.17441 -6.30683 -3.82051 2.09018 2.38724 2.66109 3.00982 3.04598 3.13580 3.73570 3.86223 4.09552 4.16615 4.34044 4.36494 4.41035 4.52440 4.64257 4.68191 4.77744 4.78878 4.89792 5.01323 5.05773 5.08966 5.09745 5.18747 5.21794 5.24868 5.29439 5.31531 5.37331 5.42740 5.48661 5.52963 5.55925 5.58723 5.64385 5.72596 5.81046 5.91325 5.97151 6.00316 6.03094 6.25924 6.41479 6.47556 6.73638 6.97945 7.13709 7.58349 7.94525 8.14760 8.60914 8.96084 9.42785 9.84680 10.82621 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.001819 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.611162 B =15387.020154 C =15643.633124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.609 5.609 3 C 0.514 3.486 4 O -0.533 6.533 5 C -0.132 4.132 6 C -0.044 4.044 7 H 0.088 0.912 8 C -0.135 4.135 9 C -0.170 4.170 10 C -0.090 4.090 11 C -0.120 4.120 12 C -0.116 4.116 13 C 0.117 3.883 14 C -0.001 4.001 15 N -0.444 5.444 16 C 0.011 3.989 17 C 0.454 3.546 18 O -0.555 6.555 19 N -0.594 5.594 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.012 4.012 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.131 0.869 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 31.445 8.784 32.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C 0.303 3.697 4 O -0.409 6.409 5 C -0.172 4.172 6 C -0.063 4.063 7 H 0.106 0.894 8 C -0.153 4.153 9 C -0.188 4.188 10 C -0.127 4.127 11 C -0.158 4.158 12 C -0.153 4.153 13 C 0.013 3.987 14 C -0.130 4.130 15 N -0.166 5.166 16 C -0.122 4.122 17 C 0.240 3.760 18 O -0.435 6.435 19 N -0.234 5.234 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.737 30.707 8.212 31.795 hybrid contribution -2.295 0.034 0.968 2.491 sum -3.032 30.741 9.180 32.226 Atomic orbital electron populations 1.21890 0.79672 1.03691 1.02206 1.47959 1.06875 1.05936 1.73442 1.20753 0.88180 0.85287 0.75511 1.90707 1.13914 1.87244 1.49052 1.21765 0.99199 0.91931 1.04322 1.19861 0.95767 0.92961 0.97689 0.89364 1.22170 0.98472 0.98866 0.95753 1.22024 1.01927 0.94448 1.00365 1.20441 1.00820 0.95096 0.96339 1.21583 0.99480 0.98203 0.96526 1.21656 0.98010 0.93870 1.01774 1.23149 0.99088 0.80645 0.95861 1.24512 1.00688 0.90280 0.97560 1.68376 1.37457 1.08124 1.02675 1.22492 0.92941 0.95527 1.01191 1.19570 0.85323 0.84606 0.86542 1.90574 1.28530 1.79490 1.44931 1.42218 1.20030 1.19134 1.42034 1.19431 1.08422 0.94338 1.21067 0.86310 1.25033 0.98184 0.95521 0.97480 1.69626 1.35801 1.08203 1.38601 0.86669 0.83672 0.78573 0.80433 1.19711 1.20178 1.19564 1.24468 1.01572 0.91215 0.96943 0.92288 0.90653 0.90428 0.88603 0.88781 0.87160 0.88201 0.91189 0.91391 0.91707 0.91636 0.91560 0.91564 0.85149 0.90850 0.88252 0.89195 0.92450 0.79839 0.91649 0.88741 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 9.41 59.84 0.56 0.99 16 2 N -0.61 -5.84 3.10 -175.27 -0.54 -6.39 16 3 C 0.51 5.34 7.31 -10.98 -0.08 5.26 16 4 O -0.53 -7.52 13.73 5.56 0.08 -7.44 16 5 C -0.13 -0.90 3.62 -27.88 -0.10 -1.00 16 6 C -0.04 -0.35 2.12 -92.06 -0.20 -0.54 16 7 H 0.09 0.83 7.95 -51.93 -0.41 0.42 16 8 C -0.13 -1.24 8.41 -35.90 -0.30 -1.54 16 9 C -0.17 -1.38 9.80 -35.90 -0.35 -1.73 16 10 C -0.09 -0.57 6.11 -28.18 -0.17 -0.74 16 11 C -0.12 -0.71 6.01 -26.55 -0.16 -0.87 16 12 C -0.12 -0.67 5.29 -26.55 -0.14 -0.81 16 13 C 0.12 1.40 4.41 -69.62 -0.31 1.09 16 14 C 0.00 -0.01 7.49 -2.63 -0.02 -0.03 16 15 N -0.44 -7.03 5.65 -239.65 -1.35 -8.38 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.40 7.83 -10.98 -0.09 10.31 16 18 O -0.55 -15.25 16.01 5.55 0.09 -15.16 16 19 N -0.59 -14.15 5.09 -10.96 -0.06 -14.20 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 22 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 23 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 24 Si 0.88 19.24 27.73 -169.99 -4.71 14.52 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 C -0.01 -0.14 7.54 -2.76 -0.02 -0.16 16 29 H 0.06 0.31 7.98 -51.93 -0.41 -0.10 16 30 H 0.07 0.50 5.83 -51.93 -0.30 0.20 16 31 H 0.08 0.32 6.26 -51.93 -0.33 0.00 16 32 H 0.10 0.47 7.42 -51.93 -0.39 0.09 16 33 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.11 1.24 6.51 -52.48 -0.34 0.90 16 35 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 42 H 0.13 1.82 7.19 -51.93 -0.37 1.45 16 43 H 0.07 0.88 5.29 -51.93 -0.27 0.60 16 44 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 46 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 47 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.07 0.69 7.16 -51.93 -0.37 0.31 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -35.20 392.06 -9.48 -44.69 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.02 Total: 8.90 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.65 Total: 2.61 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -1.18 Total: -54.03 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.17 Total: -22.60 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.20 -9.48 -44.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.380 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds