Wall clock time and date at job start Tue Mar 31 2020 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 120.00509 * 2 1 4 4 O 1.21279 * 120.00278 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99398 * 359.97438 * 3 2 1 6 6 C 1.53006 * 109.46817 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.35794 * 54.99821 * 6 5 3 8 8 C 1.50064 * 109.35671 * 295.27663 * 6 5 3 9 9 C 1.29446 * 124.07761 * 222.64228 * 8 6 5 10 10 C 1.50063 * 124.07451 * 0.48579 * 9 8 6 11 11 C 1.53025 * 110.14722 * 342.87647 * 10 9 8 12 12 C 1.53026 * 109.35660 * 174.72536 * 6 5 3 13 13 C 1.46503 * 120.00069 * 179.97438 * 2 1 3 14 14 C 1.53937 * 113.72727 * 42.60116 * 13 2 1 15 15 N 1.48188 * 86.10328 * 221.95544 * 14 13 2 16 16 C 1.46897 * 111.07213 * 137.51978 * 15 14 13 17 17 C 1.50699 * 109.46913 * 90.57167 * 16 15 14 18 18 O 1.21286 * 120.00266 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99692 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99827 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00040 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00023 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99817 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99896 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47184 * 90.00257 * 24 22 20 26 26 H 1.48497 * 109.47175 * 210.00155 * 24 22 20 27 27 H 1.48501 * 109.47277 * 330.00275 * 24 22 20 28 28 C 1.47970 * 90.79415 * 24.60320 * 15 14 13 29 29 H 1.09004 * 109.47373 * 265.02304 * 1 2 3 30 30 H 1.08995 * 109.47638 * 145.01540 * 1 2 3 31 31 H 1.09006 * 109.46923 * 25.01743 * 1 2 3 32 32 H 1.09000 * 109.47600 * 300.00115 * 5 3 2 33 33 H 1.08993 * 109.47392 * 60.00739 * 5 3 2 34 34 H 1.08006 * 117.96625 * 42.66265 * 8 6 5 35 35 H 1.08001 * 117.95991 * 180.47235 * 9 8 6 36 36 H 1.09010 * 109.35621 * 103.07994 * 10 9 8 37 37 H 1.08997 * 109.35923 * 222.80155 * 10 9 8 38 38 H 1.09004 * 109.63794 * 169.11850 * 11 10 9 39 39 H 1.08996 * 109.64157 * 289.53503 * 11 10 9 40 40 H 1.08999 * 109.64058 * 289.32363 * 12 6 5 41 41 H 1.08997 * 109.64113 * 49.96015 * 12 6 5 42 42 H 1.08998 * 112.94169 * 174.16337 * 13 2 1 43 43 H 1.09001 * 113.76125 * 336.23791 * 14 13 2 44 44 H 1.09004 * 113.75878 * 107.60662 * 14 13 2 45 45 H 1.09000 * 109.47433 * 210.56893 * 16 15 14 46 46 H 1.09006 * 109.47424 * 330.57133 * 16 15 14 47 47 H 0.96998 * 120.00434 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99387 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.75494 * 221.08705 * 28 15 14 50 50 H 1.08999 * 113.85806 * 89.73462 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3798 3.6352 -0.0011 7 1 3.0629 3.5261 -0.8434 8 6 3.1625 3.6209 1.2792 9 6 3.4403 4.6790 1.9712 10 6 3.0096 6.0665 1.5954 11 6 2.5930 6.1086 0.1236 12 6 1.6167 4.9549 -0.1344 13 6 2.1975 -1.2687 0.0006 14 6 1.6089 -2.3243 -0.9529 15 7 1.8533 -3.2981 0.1370 16 6 0.7187 -4.2191 0.2866 17 6 0.9376 -5.4311 -0.5819 18 8 1.9399 -5.5187 -1.2592 19 7 0.0191 -6.4171 -0.6068 20 6 0.2180 -7.5194 -1.3973 21 1 1.1105 -7.5975 -2.0004 22 6 -0.7287 -8.5362 -1.4225 23 7 -0.5378 -9.5931 -2.1799 24 14 -2.2720 -8.4016 -0.3789 25 1 -3.3399 -7.7263 -1.1591 26 1 -2.7270 -9.7607 0.0096 27 1 -1.9761 -7.6107 0.8427 28 6 1.7944 -2.2163 1.1448 29 1 -0.3634 -0.0892 1.0238 30 1 -0.3634 -0.8419 -0.5892 31 1 -0.3633 0.9313 -0.4346 32 1 0.7591 2.5299 -0.8908 33 1 0.7586 2.5303 0.8891 34 1 3.5163 2.6687 1.6459 35 1 4.0179 4.5554 2.8754 36 1 2.1660 6.3641 2.2184 37 1 3.8376 6.7573 1.7545 38 1 2.1036 7.0585 -0.0916 39 1 3.4733 5.9983 -0.5096 40 1 1.2082 5.0418 -1.1412 41 1 0.8085 4.9862 0.5963 42 1 3.2747 -1.1374 -0.1016 43 1 0.5531 -2.1728 -1.1779 44 1 2.2139 -2.4984 -1.8427 45 1 0.6369 -4.5288 1.3285 46 1 -0.1999 -3.7163 -0.0161 47 1 -0.7827 -6.3469 -0.0654 48 1 -1.1989 -10.3027 -2.1978 49 1 2.5475 -2.3043 1.9279 50 1 0.7939 -2.0320 1.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716743565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:39 Heat of formation + Delta-G solvation = -40.983200 kcal Electronic energy + Delta-G solvation = -28599.739859 eV Core-core repulsion = 24627.342055 eV Total energy + Delta-G solvation = -3972.397804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85567 -40.67030 -39.74198 -38.87904 -36.13920 -35.85063 -33.77552 -33.61215 -31.85447 -31.48674 -28.51292 -28.01502 -27.26790 -26.92107 -24.96658 -23.28965 -22.97429 -21.33416 -20.99036 -20.34880 -19.79594 -18.83711 -18.27831 -17.79812 -17.52290 -16.97388 -16.86167 -16.69192 -16.37887 -15.89271 -15.57460 -15.23956 -15.02945 -14.95636 -14.54515 -14.45137 -14.12063 -14.02391 -13.85998 -13.76476 -13.56307 -13.36096 -13.24316 -13.08757 -13.05328 -12.85997 -12.77891 -12.41691 -12.36636 -12.14329 -11.98514 -11.84196 -11.68808 -11.50137 -11.38408 -11.03361 -10.65013 -10.46782 -10.24612 -9.85930 -9.73411 -9.63103 -8.40909 -6.02357 1.30257 1.36304 1.43593 1.45644 1.62833 1.90391 1.96894 2.23885 2.65064 3.14570 3.16436 3.46977 3.57028 3.71697 3.82666 3.85690 4.01170 4.05559 4.13314 4.19556 4.27890 4.29676 4.36827 4.41200 4.43277 4.52894 4.54905 4.64221 4.67015 4.72243 4.78615 4.83227 4.84979 4.91122 4.99344 5.01035 5.09911 5.12023 5.25269 5.32350 5.44629 5.45470 5.52169 5.54408 5.83219 5.88368 5.99380 6.11161 6.40992 6.60247 6.88974 7.19428 7.40216 7.99081 8.77058 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.001819 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.611162 B =15387.020154 C =15643.633124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.606 5.606 3 C 0.506 3.494 4 O -0.582 6.582 5 C -0.122 4.122 6 C -0.044 4.044 7 H 0.063 0.937 8 C -0.151 4.151 9 C -0.167 4.167 10 C -0.090 4.090 11 C -0.123 4.123 12 C -0.110 4.110 13 C 0.125 3.875 14 C 0.000 4.000 15 N -0.487 5.487 16 C 0.025 3.975 17 C 0.450 3.550 18 O -0.613 6.613 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.050 0.950 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.229 1.229 28 C 0.005 3.995 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.093 0.907 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 34.495 11.454 37.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.338 5.338 3 C 0.297 3.703 4 O -0.462 6.462 5 C -0.161 4.161 6 C -0.062 4.062 7 H 0.081 0.919 8 C -0.169 4.169 9 C -0.185 4.185 10 C -0.127 4.127 11 C -0.160 4.160 12 C -0.147 4.147 13 C 0.020 3.980 14 C -0.130 4.130 15 N -0.211 5.211 16 C -0.107 4.107 17 C 0.238 3.762 18 O -0.496 6.496 19 N -0.234 5.234 20 C -0.459 4.459 21 H 0.069 0.931 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.153 1.153 28 C -0.124 4.124 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.138 0.862 46 H 0.117 0.883 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.284 33.790 10.901 35.896 hybrid contribution -0.703 -0.915 0.063 1.155 sum -5.986 32.875 10.965 35.169 Atomic orbital electron populations 1.22217 0.76973 1.05222 1.03798 1.48019 1.08385 1.04607 1.72776 1.21496 0.87857 0.86567 0.74419 1.90694 1.16301 1.87934 1.51251 1.21802 0.98794 0.88964 1.06589 1.19842 0.95773 0.94835 0.95781 0.91881 1.22109 0.99891 0.97935 0.96990 1.22234 1.00931 0.95347 0.99950 1.20493 1.01556 0.93675 0.96948 1.21618 0.99289 0.99228 0.95890 1.21644 0.97871 0.92173 1.03007 1.22698 0.97748 0.81900 0.95699 1.24502 1.01659 0.90492 0.96309 1.68280 1.38197 1.09834 1.04741 1.22434 0.94758 0.92593 1.00900 1.20967 0.83747 0.85765 0.85756 1.90553 1.30907 1.80879 1.47298 1.42020 1.21270 1.18146 1.41938 1.18989 1.07190 0.97246 1.22517 0.93144 1.26175 1.02593 0.94045 0.98745 1.69821 1.37814 1.09447 1.40616 0.85318 0.77162 0.79322 0.79388 1.17823 1.20184 1.15263 1.24457 1.03395 0.88672 0.95842 0.90264 0.90633 0.87778 0.85894 0.86437 0.90022 0.88448 0.89731 0.90846 0.89949 0.92951 0.90202 0.90197 0.88365 0.88287 0.91703 0.86217 0.88280 0.77397 0.91165 0.88885 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 9.41 127.77 1.20 1.68 16 2 N -0.61 -10.42 3.10 -826.82 -2.56 -12.98 16 3 C 0.51 10.12 7.31 87.66 0.64 10.76 16 4 O -0.58 -17.32 13.73 -3.03 -0.04 -17.36 16 5 C -0.12 -1.35 3.62 29.85 0.11 -1.25 16 6 C -0.04 -0.64 2.12 -11.73 -0.02 -0.66 16 7 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 8 C -0.15 -2.80 8.41 27.03 0.23 -2.57 16 9 C -0.17 -2.61 9.80 27.03 0.27 -2.34 16 10 C -0.09 -0.96 6.11 29.66 0.18 -0.78 16 11 C -0.12 -1.20 6.01 30.71 0.18 -1.02 16 12 C -0.11 -0.97 5.29 30.71 0.16 -0.81 16 13 C 0.12 2.94 4.41 46.55 0.21 3.15 16 14 C 0.00 -0.01 7.49 86.37 0.65 0.64 16 15 N -0.49 -14.87 5.65 -912.13 -5.15 -20.02 16 16 C 0.02 0.73 5.28 85.56 0.45 1.19 16 17 C 0.45 20.57 7.83 87.66 0.69 21.26 16 18 O -0.61 -35.40 16.01 -3.05 -0.05 -35.45 16 19 N -0.59 -27.81 5.09 -306.98 -1.56 -29.38 16 20 C -0.33 -19.54 10.16 84.04 0.85 -18.68 16 21 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 24 Si 0.97 38.13 27.73 68.60 1.90 40.03 16 25 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 26 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 28 C 0.01 0.12 7.54 86.41 0.65 0.77 16 29 H 0.08 0.38 7.98 -2.38 -0.02 0.37 16 30 H 0.08 0.65 5.83 -2.39 -0.01 0.63 16 31 H 0.10 0.32 6.26 -2.38 -0.01 0.30 16 32 H 0.12 0.72 7.42 -2.39 -0.02 0.70 16 33 H 0.12 0.80 8.11 -2.39 -0.02 0.78 16 34 H 0.08 1.96 6.51 -2.91 -0.02 1.95 16 35 H 0.10 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 0.65 8.13 -2.39 -0.02 0.63 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.53 8.10 -2.39 -0.02 0.51 16 42 H 0.10 2.96 7.19 -2.39 -0.02 2.94 16 43 H 0.10 2.11 5.29 -2.39 -0.01 2.10 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.12 2.87 8.08 -2.39 -0.02 2.85 16 46 H 0.10 2.14 7.39 -2.38 -0.02 2.12 16 47 H 0.39 14.82 5.76 -92.71 -0.53 14.28 16 48 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.11 1.50 7.16 -2.39 -0.02 1.48 16 Total: -1.00 -87.50 392.06 0.10 -87.39 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.35 Total: 33.42 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.91 Total: 10.83 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -8.97 Total: -118.87 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -0.09 Total: -52.81 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -87.50 0.10 -87.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -87.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds