Wall clock time and date at job start Tue Mar 31 2020 18:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00085 * 2 1 4 4 O 1.21288 * 119.99980 * 354.97458 * 3 2 1 5 5 C 1.50692 * 120.00157 * 174.97494 * 3 2 1 6 6 C 1.50707 * 112.85055 * 65.56066 * 5 3 2 7 7 O 1.21277 * 120.00031 * 235.41619 * 6 5 3 8 8 N 1.34774 * 119.99843 * 55.69091 * 6 5 3 9 9 C 1.46499 * 120.00211 * 184.97542 * 8 6 5 10 10 H 1.08998 * 109.32068 * 34.63964 * 9 8 6 11 11 C 1.53026 * 109.32576 * 154.10817 * 9 8 6 12 12 C 1.54026 * 108.29854 * 176.69129 * 11 9 8 13 13 H 1.09005 * 113.34296 * 168.01228 * 12 11 9 14 14 C 1.57163 * 105.53466 * 292.36820 * 12 11 9 15 15 C 1.55170 * 99.58815 * 74.59772 * 14 12 11 16 16 H 1.08999 * 112.48306 * 162.91933 * 15 14 12 17 17 C 1.52987 * 109.32466 * 275.00156 * 9 8 6 18 18 N 1.47785 * 104.88122 * 40.38597 * 15 14 12 19 19 C 1.36933 * 125.85701 * 153.25853 * 18 15 14 20 20 H 1.08007 * 119.99897 * 359.97438 * 19 18 15 21 21 C 1.38811 * 120.00100 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46981 * 60.00182 * 23 21 19 25 25 H 1.48496 * 109.47021 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47020 * 300.00049 * 23 21 19 27 27 C 1.47085 * 108.28845 * 333.25344 * 18 15 14 28 28 C 1.53785 * 113.61791 * 196.75548 * 5 3 2 29 29 C 1.53963 * 87.01434 * 89.22929 * 28 5 3 30 30 C 1.53781 * 87.11110 * 25.36803 * 29 28 5 31 31 H 1.09007 * 109.47143 * 59.99786 * 1 2 3 32 32 H 1.09000 * 109.47406 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47071 * 300.00098 * 1 2 3 34 34 H 0.96995 * 120.00162 * 180.02562 * 2 1 3 35 35 H 0.97003 * 120.00231 * 4.97382 * 8 6 5 36 36 H 1.08993 * 109.58196 * 295.48042 * 11 9 8 37 37 H 1.09000 * 109.57919 * 55.87818 * 11 9 8 38 38 H 1.08997 * 111.97021 * 316.92780 * 14 12 11 39 39 H 1.08999 * 111.20360 * 191.95449 * 14 12 11 40 40 H 1.09003 * 109.53405 * 304.52607 * 17 9 8 41 41 H 1.09000 * 109.53464 * 64.75201 * 17 9 8 42 42 H 0.97000 * 120.00198 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.97344 * 120.45430 * 27 18 15 44 44 H 1.08988 * 109.97926 * 241.70290 * 27 18 15 45 45 H 1.09000 * 113.61745 * 203.74927 * 28 5 3 46 46 H 1.08992 * 113.61479 * 334.65660 * 28 5 3 47 47 H 1.09000 * 113.53787 * 270.81171 * 29 28 5 48 48 H 1.08998 * 113.66126 * 139.93408 * 29 28 5 49 49 H 1.09009 * 113.60966 * 220.08827 * 30 29 28 50 50 H 1.09001 * 113.69505 * 89.19897 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0920 5 6 3.6415 1.1697 0.1143 6 6 4.3200 0.5413 -1.0756 7 8 5.0965 -0.3765 -0.9161 8 7 4.0680 1.0029 -2.3165 9 6 4.6414 0.3239 -3.4812 10 1 4.6845 -0.7480 -3.2886 11 6 3.7566 0.5801 -4.7031 12 6 4.4235 -0.0727 -5.9285 13 1 3.7709 -0.1223 -6.8002 14 6 5.7348 0.7550 -6.1848 15 6 6.6092 0.2213 -5.0194 16 1 7.6689 0.4325 -5.1628 17 6 6.0561 0.8511 -3.7289 18 7 6.3248 -1.2279 -4.9643 19 6 7.1729 -2.1944 -4.4937 20 1 8.1485 -1.9212 -4.1193 21 6 6.7790 -3.5255 -4.4979 22 7 5.5900 -3.8585 -4.9537 23 14 7.9363 -4.8441 -3.8567 24 1 8.2589 -4.5700 -2.4332 25 1 7.2831 -6.1730 -3.9686 26 1 9.1867 -4.8375 -4.6578 27 6 4.9743 -1.4539 -5.5014 28 6 4.2272 2.5365 0.5066 29 6 4.0652 2.0949 1.9726 30 6 4.1575 0.6462 1.4651 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9500 -0.8400 -0.0004 35 1 3.5070 1.7848 -2.4386 36 1 2.7783 0.1255 -4.5475 37 1 3.6430 1.6537 -4.8532 38 1 5.5647 1.8276 -6.0918 39 1 6.1733 0.5094 -7.1520 40 1 6.0274 1.9355 -3.8358 41 1 6.6970 0.5835 -2.8889 42 1 5.3146 -4.7885 -4.9564 43 1 5.0231 -2.1182 -6.3642 44 1 4.3357 -1.8886 -4.7326 45 1 5.2656 2.6700 0.2030 46 1 3.5929 3.3788 0.2308 47 1 3.0942 2.3474 2.3985 48 1 4.8980 2.3873 2.6121 49 1 3.4668 -0.0353 1.9619 50 1 5.1762 0.2606 1.4237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716951484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:52 Heat of formation + Delta-G solvation = -19.084574 kcal Electronic energy + Delta-G solvation = -31336.330423 eV Core-core repulsion = 27364.882215 eV Total energy + Delta-G solvation = -3971.448209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26150 -39.72750 -38.51523 -37.05279 -34.80873 -34.51128 -32.79310 -30.65604 -29.91481 -28.67727 -27.92817 -26.08813 -25.60197 -25.31525 -23.10707 -22.14082 -21.67106 -20.48280 -19.53185 -19.34406 -18.85714 -17.72399 -16.96732 -16.47373 -16.17367 -15.87246 -15.35563 -14.94855 -14.70410 -14.53134 -14.26047 -14.10135 -13.54927 -13.39788 -13.05867 -12.96417 -12.73461 -12.64478 -12.49507 -12.21798 -11.94724 -11.78977 -11.73438 -11.54659 -11.38579 -11.22403 -11.16761 -10.72169 -10.65777 -10.60068 -10.52093 -10.11514 -9.98957 -9.86056 -9.68289 -9.65113 -9.42015 -9.34866 -9.21746 -8.59619 -8.52662 -6.77042 -5.63517 -2.95564 2.30789 2.72105 3.00171 3.38610 3.47268 3.51099 3.52793 4.29624 4.35257 4.49283 4.57377 4.59184 4.79331 5.03471 5.19799 5.20869 5.26438 5.28855 5.46030 5.48348 5.56295 5.59180 5.63896 5.65661 5.74290 5.79839 5.85097 5.88241 5.90109 6.04812 6.10147 6.10457 6.13425 6.15488 6.18156 6.24289 6.56952 6.63525 6.69207 6.86923 6.88053 6.99944 7.06216 7.21165 7.61143 7.63858 7.77795 7.88118 7.95098 8.31713 8.47486 9.29539 9.89918 10.56126 11.48504 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.004016 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.203192 B = 6969.709749 C = 7586.029321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.547 3.453 4 O -0.532 6.532 5 C -0.140 4.140 6 C 0.526 3.474 7 O -0.511 6.511 8 N -0.722 5.722 9 C 0.147 3.853 10 H 0.114 0.886 11 C -0.112 4.112 12 C -0.118 4.118 13 H 0.081 0.919 14 C -0.131 4.131 15 C 0.157 3.843 16 H 0.064 0.936 17 C -0.135 4.135 18 N -0.594 5.594 19 C -0.220 4.220 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.925 5.925 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.182 3.818 28 C -0.107 4.107 29 C -0.141 4.141 30 C -0.104 4.104 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.392 0.608 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.251 0.749 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 12.160 8.781 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.332 3.668 4 O -0.408 6.408 5 C -0.147 4.147 6 C 0.309 3.691 7 O -0.386 6.386 8 N -0.372 5.372 9 C 0.044 3.956 10 H 0.132 0.868 11 C -0.150 4.150 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.169 4.169 15 C 0.048 3.952 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.319 5.319 19 C -0.348 4.348 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.573 5.573 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.058 3.942 28 C -0.145 4.145 29 C -0.178 4.178 30 C -0.142 4.142 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.225 0.775 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.600 11.934 8.870 17.177 hybrid contribution 0.395 -0.826 0.267 0.954 sum -8.205 11.108 9.136 16.558 Atomic orbital electron populations 1.21574 0.79126 1.02583 1.02301 1.45756 1.07990 1.08911 1.75283 1.19566 0.87887 0.83790 0.75548 1.90692 1.69637 1.31388 1.49118 1.22413 0.93019 1.02138 0.97125 1.19740 0.82475 0.83398 0.83493 1.90820 1.34429 1.28403 1.84901 1.46268 1.52272 1.32387 1.06230 1.21247 0.92031 0.99678 0.82595 0.86802 1.21971 0.98307 0.99584 0.95168 1.23160 0.96044 0.98580 0.95943 0.90079 1.23306 0.96856 0.97693 0.99047 1.21485 0.96383 0.85884 0.91410 0.91815 1.22610 0.96247 0.97769 1.01048 1.44590 1.14319 0.99915 1.73054 1.18971 0.96087 0.86014 1.33714 0.90667 1.24715 0.97039 0.96975 1.01497 1.69929 1.18720 1.16500 1.52108 0.86244 0.79838 0.81206 0.78795 1.21178 1.21742 1.21328 1.21255 0.85712 0.89455 0.97786 1.22826 1.01589 0.94052 0.95994 1.22901 1.02596 0.95932 0.96415 1.22856 1.03378 0.97009 0.90963 0.91956 0.90376 0.92202 0.75832 0.77488 0.92411 0.92556 0.92055 0.91929 0.93827 0.92124 0.93906 0.93724 0.93673 0.88804 0.89221 0.89944 0.90424 0.90777 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.71 59.85 0.64 1.41 16 2 N -0.73 -8.00 5.71 -67.08 -0.38 -8.38 16 3 C 0.55 7.04 6.29 -10.99 -0.07 6.97 16 4 O -0.53 -7.95 15.95 5.55 0.09 -7.86 16 5 C -0.14 -1.79 1.04 -156.00 -0.16 -1.95 16 6 C 0.53 8.53 6.80 -10.98 -0.07 8.46 16 7 O -0.51 -10.59 15.65 5.56 0.09 -10.50 16 8 N -0.72 -11.18 4.96 -53.80 -0.27 -11.45 16 9 C 0.15 2.69 2.04 -67.92 -0.14 2.55 16 10 H 0.11 2.70 5.41 -51.93 -0.28 2.42 16 11 C -0.11 -1.80 5.02 -26.18 -0.13 -1.94 16 12 C -0.12 -2.11 4.34 -86.92 -0.38 -2.49 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.13 -2.24 6.28 -23.32 -0.15 -2.38 16 15 C 0.16 3.18 4.25 -65.62 -0.28 2.91 16 16 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.14 -2.54 5.27 -26.28 -0.14 -2.68 16 18 N -0.59 -14.80 2.45 -161.37 -0.40 -15.19 16 19 C -0.22 -6.15 10.29 -15.06 -0.16 -6.31 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -27.21 10.35 55.49 0.57 -26.64 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.18 4.31 4.11 -2.82 -0.01 4.30 16 28 C -0.11 -1.18 7.10 -25.82 -0.18 -1.36 16 29 C -0.14 -1.37 7.81 -25.82 -0.20 -1.57 16 30 C -0.10 -1.18 6.95 -25.92 -0.18 -1.36 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.41 4.30 8.83 -40.82 -0.36 3.94 16 35 H 0.39 5.26 8.55 -40.82 -0.35 4.91 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.78 7.97 -51.93 -0.41 0.36 16 38 H 0.06 0.90 7.75 -51.93 -0.40 0.49 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.70 8.00 -51.93 -0.42 0.29 16 41 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.04 1.19 7.40 -51.93 -0.38 0.80 16 44 H 0.05 1.19 6.18 -51.94 -0.32 0.87 16 45 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 46 H 0.09 1.00 7.34 -51.93 -0.38 0.62 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.75 8.09 -51.92 -0.42 0.33 16 50 H 0.11 1.34 7.52 -51.93 -0.39 0.95 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -33.19 388.43 -9.48 -42.67 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.31 Total: 9.50 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.70 Total: 4.28 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.47 Total: -61.66 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.19 -9.48 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716951484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.587 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds