Wall clock time and date at job start Tue Mar 31 2020 18:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00085 * 2 1 4 4 O 1.21288 * 119.99980 * 354.97458 * 3 2 1 5 5 C 1.50692 * 120.00157 * 174.97494 * 3 2 1 6 6 C 1.50707 * 112.85055 * 65.56066 * 5 3 2 7 7 O 1.21277 * 120.00031 * 235.41619 * 6 5 3 8 8 N 1.34774 * 119.99843 * 55.69091 * 6 5 3 9 9 C 1.46499 * 120.00211 * 184.97542 * 8 6 5 10 10 H 1.08998 * 109.32068 * 34.63964 * 9 8 6 11 11 C 1.53026 * 109.32576 * 154.10817 * 9 8 6 12 12 C 1.54026 * 108.29854 * 176.69129 * 11 9 8 13 13 H 1.09005 * 113.34296 * 168.01228 * 12 11 9 14 14 C 1.57163 * 105.53466 * 292.36820 * 12 11 9 15 15 C 1.55170 * 99.58815 * 74.59772 * 14 12 11 16 16 H 1.08999 * 112.48306 * 162.91933 * 15 14 12 17 17 C 1.52987 * 109.32466 * 275.00156 * 9 8 6 18 18 N 1.47785 * 104.88122 * 40.38597 * 15 14 12 19 19 C 1.36933 * 125.85701 * 153.25853 * 18 15 14 20 20 H 1.08007 * 119.99897 * 359.97438 * 19 18 15 21 21 C 1.38811 * 120.00100 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46981 * 60.00182 * 23 21 19 25 25 H 1.48496 * 109.47021 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47020 * 300.00049 * 23 21 19 27 27 C 1.47085 * 108.28845 * 333.25344 * 18 15 14 28 28 C 1.53785 * 113.61791 * 196.75548 * 5 3 2 29 29 C 1.53963 * 87.01434 * 89.22929 * 28 5 3 30 30 C 1.53781 * 87.11110 * 25.36803 * 29 28 5 31 31 H 1.09007 * 109.47143 * 59.99786 * 1 2 3 32 32 H 1.09000 * 109.47406 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47071 * 300.00098 * 1 2 3 34 34 H 0.96995 * 120.00162 * 180.02562 * 2 1 3 35 35 H 0.97003 * 120.00231 * 4.97382 * 8 6 5 36 36 H 1.08993 * 109.58196 * 295.48042 * 11 9 8 37 37 H 1.09000 * 109.57919 * 55.87818 * 11 9 8 38 38 H 1.08997 * 111.97021 * 316.92780 * 14 12 11 39 39 H 1.08999 * 111.20360 * 191.95449 * 14 12 11 40 40 H 1.09003 * 109.53405 * 304.52607 * 17 9 8 41 41 H 1.09000 * 109.53464 * 64.75201 * 17 9 8 42 42 H 0.97000 * 120.00198 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.97344 * 120.45430 * 27 18 15 44 44 H 1.08988 * 109.97926 * 241.70290 * 27 18 15 45 45 H 1.09000 * 113.61745 * 203.74927 * 28 5 3 46 46 H 1.08992 * 113.61479 * 334.65660 * 28 5 3 47 47 H 1.09000 * 113.53787 * 270.81171 * 29 28 5 48 48 H 1.08998 * 113.66126 * 139.93408 * 29 28 5 49 49 H 1.09009 * 113.60966 * 220.08827 * 30 29 28 50 50 H 1.09001 * 113.69505 * 89.19897 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0920 5 6 3.6415 1.1697 0.1143 6 6 4.3200 0.5413 -1.0756 7 8 5.0965 -0.3765 -0.9161 8 7 4.0680 1.0029 -2.3165 9 6 4.6414 0.3239 -3.4812 10 1 4.6845 -0.7480 -3.2886 11 6 3.7566 0.5801 -4.7031 12 6 4.4235 -0.0727 -5.9285 13 1 3.7709 -0.1223 -6.8002 14 6 5.7348 0.7550 -6.1848 15 6 6.6092 0.2213 -5.0194 16 1 7.6689 0.4325 -5.1628 17 6 6.0561 0.8511 -3.7289 18 7 6.3248 -1.2279 -4.9643 19 6 7.1729 -2.1944 -4.4937 20 1 8.1485 -1.9212 -4.1193 21 6 6.7790 -3.5255 -4.4979 22 7 5.5900 -3.8585 -4.9537 23 14 7.9363 -4.8441 -3.8567 24 1 8.2589 -4.5700 -2.4332 25 1 7.2831 -6.1730 -3.9686 26 1 9.1867 -4.8375 -4.6578 27 6 4.9743 -1.4539 -5.5014 28 6 4.2272 2.5365 0.5066 29 6 4.0652 2.0949 1.9726 30 6 4.1575 0.6462 1.4651 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9500 -0.8400 -0.0004 35 1 3.5070 1.7848 -2.4386 36 1 2.7783 0.1255 -4.5475 37 1 3.6430 1.6537 -4.8532 38 1 5.5647 1.8276 -6.0918 39 1 6.1733 0.5094 -7.1520 40 1 6.0274 1.9355 -3.8358 41 1 6.6970 0.5835 -2.8889 42 1 5.3146 -4.7885 -4.9564 43 1 5.0231 -2.1182 -6.3642 44 1 4.3357 -1.8886 -4.7326 45 1 5.2656 2.6700 0.2030 46 1 3.5929 3.3788 0.2308 47 1 3.0942 2.3474 2.3985 48 1 4.8980 2.3873 2.6121 49 1 3.4668 -0.0353 1.9619 50 1 5.1762 0.2606 1.4237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716951484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:51 Heat of formation + Delta-G solvation = -42.566956 kcal Electronic energy + Delta-G solvation = -31337.348696 eV Core-core repulsion = 27364.882215 eV Total energy + Delta-G solvation = -3972.466481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.36733 -41.19152 -39.80726 -38.12056 -36.13024 -35.71208 -34.68094 -32.36052 -31.48825 -30.18753 -29.02344 -27.23740 -27.02175 -26.48746 -24.93290 -23.44346 -22.63462 -21.81041 -21.20508 -20.51144 -20.22959 -19.05563 -18.83041 -17.58730 -17.27987 -17.11356 -16.68759 -16.43428 -16.07500 -15.77502 -15.71458 -15.40606 -15.26734 -14.65723 -14.42779 -14.18443 -13.88096 -13.79107 -13.55310 -13.45892 -13.41878 -13.25412 -13.18445 -13.03023 -12.94931 -12.62236 -12.53086 -12.47356 -12.16299 -12.02177 -11.91666 -11.63463 -11.50180 -11.42472 -11.15312 -11.10879 -10.97838 -10.66801 -10.62271 -10.24526 -10.03212 -8.82042 -7.81559 -5.13312 1.24546 1.40877 1.45124 1.49138 1.49909 2.06647 2.13333 2.50308 3.32031 3.36671 3.39918 3.55317 3.64115 3.68331 3.73186 3.76722 3.92471 4.13172 4.30482 4.37099 4.39350 4.43331 4.51379 4.58344 4.59746 4.61891 4.63002 4.76077 4.76886 4.81668 4.88088 4.90187 4.96728 4.99576 5.09496 5.17499 5.26644 5.28102 5.31709 5.33163 5.37783 5.47253 5.50937 5.61864 5.73217 5.83874 6.24284 6.26683 6.50540 6.96724 7.15703 7.20710 7.83811 8.48356 9.28421 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.004016 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.203192 B = 6969.709749 C = 7586.029321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.549 3.451 4 O -0.551 6.551 5 C -0.139 4.139 6 C 0.526 3.474 7 O -0.564 6.564 8 N -0.709 5.709 9 C 0.156 3.844 10 H 0.053 0.947 11 C -0.102 4.102 12 C -0.107 4.107 13 H 0.108 0.892 14 C -0.113 4.113 15 C 0.141 3.859 16 H 0.062 0.938 17 C -0.124 4.124 18 N -0.613 5.613 19 C -0.229 4.229 20 H 0.071 0.929 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.966 3.034 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.193 3.807 28 C -0.103 4.103 29 C -0.126 4.126 30 C -0.107 4.107 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.408 0.592 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.023 0.977 42 H 0.243 0.757 43 H 0.003 0.997 44 H 0.005 0.995 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 15.018 8.970 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.375 5.375 3 C 0.334 3.666 4 O -0.429 6.429 5 C -0.145 4.145 6 C 0.311 3.689 7 O -0.442 6.442 8 N -0.360 5.360 9 C 0.052 3.948 10 H 0.071 0.929 11 C -0.140 4.140 12 C -0.127 4.127 13 H 0.126 0.874 14 C -0.151 4.151 15 C 0.034 3.966 16 H 0.080 0.920 17 C -0.164 4.164 18 N -0.337 5.337 19 C -0.358 4.358 20 H 0.089 0.911 21 C -0.256 4.256 22 N -0.599 5.599 23 Si 0.795 3.205 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.201 1.201 27 C 0.068 3.932 28 C -0.141 4.141 29 C -0.163 4.163 30 C -0.145 4.145 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.102 0.898 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.604 14.843 9.050 19.861 hybrid contribution 0.721 -1.728 0.241 1.887 sum -8.883 13.116 9.290 18.364 Atomic orbital electron populations 1.21760 0.77590 1.04293 1.02272 1.45861 1.09087 1.08449 1.74138 1.19495 0.87669 0.83961 0.75501 1.90682 1.69879 1.32016 1.50353 1.22466 0.93045 1.03289 0.95748 1.20336 0.81641 0.82468 0.84414 1.90803 1.36911 1.30777 1.85700 1.46092 1.51914 1.32514 1.05449 1.20878 0.92871 0.96522 0.84552 0.92894 1.21920 0.97393 1.01994 0.92655 1.23088 0.97077 0.94849 0.97652 0.87427 1.23273 0.94773 0.99779 0.97270 1.21824 0.97356 0.83548 0.93861 0.92009 1.22440 0.95562 0.99817 0.98622 1.44811 1.14477 1.01676 1.72729 1.19272 0.96429 0.87195 1.32930 0.91098 1.25452 0.98583 0.98953 1.02638 1.70149 1.20132 1.16071 1.53513 0.85330 0.78476 0.78664 0.78001 1.21446 1.21831 1.20087 1.20973 0.85044 0.92440 0.94760 1.22864 1.01488 0.92904 0.96876 1.22848 1.03690 0.93948 0.95827 1.22867 1.02623 0.98542 0.90449 0.92530 0.87926 0.91596 0.75731 0.75663 0.92087 0.88156 0.87596 0.91904 0.89863 0.95769 0.94742 0.97868 0.97656 0.88747 0.88837 0.89299 0.88570 0.89761 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.71 127.77 1.37 2.69 16 2 N -0.73 -15.14 5.71 -484.52 -2.77 -17.91 16 3 C 0.55 13.36 6.29 87.65 0.55 13.91 16 4 O -0.55 -15.40 15.95 -3.05 -0.05 -15.45 16 5 C -0.14 -3.42 1.04 -53.15 -0.06 -3.48 16 6 C 0.53 17.23 6.80 87.66 0.60 17.82 16 7 O -0.56 -24.56 15.65 -3.02 -0.05 -24.61 16 8 N -0.71 -21.30 4.96 -442.52 -2.20 -23.50 16 9 C 0.16 5.64 2.04 45.00 0.09 5.73 16 10 H 0.05 2.64 5.41 -2.39 -0.01 2.62 16 11 C -0.10 -2.99 5.02 30.95 0.16 -2.83 16 12 C -0.11 -3.64 4.34 -8.40 -0.04 -3.67 16 13 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 14 C -0.11 -3.49 6.28 32.80 0.21 -3.29 16 15 C 0.14 5.63 4.25 45.79 0.19 5.83 16 16 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.12 -4.51 5.27 30.89 0.16 -4.35 16 18 N -0.61 -31.58 2.45 -664.46 -1.63 -33.21 16 19 C -0.23 -13.40 10.29 84.03 0.87 -12.53 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.06 -3.79 5.49 84.86 0.47 -3.32 16 22 N -0.95 -58.94 10.35 21.65 0.22 -58.71 16 23 Si 0.97 48.59 29.55 68.60 2.03 50.61 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 27 C 0.19 9.45 4.11 86.85 0.36 9.81 16 28 C -0.10 -2.11 7.10 31.18 0.22 -1.88 16 29 C -0.13 -2.18 7.81 31.18 0.24 -1.93 16 30 C -0.11 -2.35 6.95 31.12 0.22 -2.13 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.41 8.47 8.83 -92.71 -0.82 7.65 16 35 H 0.41 9.88 8.55 -92.71 -0.79 9.09 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 2.17 7.97 -2.39 -0.02 2.15 16 38 H 0.11 2.43 7.75 -2.39 -0.02 2.41 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.38 8.00 -2.39 -0.02 2.36 16 41 H 0.02 1.03 8.12 -2.39 -0.02 1.02 16 42 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.00 0.17 7.40 -2.39 -0.02 0.16 16 44 H 0.01 0.30 6.18 -2.39 -0.01 0.29 16 45 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 46 H 0.09 1.87 7.34 -2.39 -0.02 1.85 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.64 8.09 -2.38 -0.02 1.62 16 50 H 0.09 2.32 7.52 -2.39 -0.02 2.30 16 Total: -1.00 -78.43 388.43 0.51 -77.92 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.65 Total: 28.47 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.60 Total: 16.37 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -6.37 Total: -133.33 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.10 Total: -40.05 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.61 kcal Total: -78.43 0.51 -77.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716951484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.357 kcal (2) G-P(sol) polarization free energy of solvation -78.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds