Wall clock time and date at job start Tue Mar 31 2020 18:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00151 * 2 1 4 4 C 1.39675 * 120.00238 * 180.02562 * 2 1 3 5 5 C 1.38914 * 120.07282 * 359.97438 * 4 2 1 6 6 C 1.38100 * 119.92419 * 180.02562 * 5 4 2 7 7 C 1.38288 * 120.07489 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.92199 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47116 * 90.00252 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46986 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47301 * 295.00412 * 14 13 12 16 16 C 1.53002 * 109.47026 * 175.00318 * 14 13 12 17 17 O 1.42895 * 109.47219 * 304.99790 * 16 14 13 18 18 N 1.46496 * 109.47227 * 55.00051 * 14 13 12 19 19 C 1.36931 * 120.00231 * 204.99833 * 18 14 13 20 20 H 1.08002 * 120.00436 * 0.02562 * 19 18 14 21 21 C 1.38821 * 120.00150 * 180.02562 * 19 18 14 22 22 N 1.31619 * 119.99699 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47110 * 90.00092 * 23 21 19 25 25 H 1.48493 * 109.47232 * 209.99911 * 23 21 19 26 26 H 1.48502 * 109.47112 * 330.00331 * 23 21 19 27 27 C 1.38283 * 120.14964 * 0.27921 * 7 6 5 28 28 C 1.38105 * 120.07446 * 359.44518 * 27 7 6 29 29 H 1.08998 * 109.46621 * 269.99668 * 1 2 3 30 30 H 1.08993 * 109.46992 * 29.99140 * 1 2 3 31 31 H 1.08999 * 109.46988 * 149.99798 * 1 2 3 32 32 H 1.09001 * 109.47746 * 240.00660 * 3 2 1 33 33 H 1.09005 * 109.47027 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.47039 * 120.00326 * 3 2 1 35 35 H 1.07999 * 120.03430 * 0.04715 * 5 4 2 36 36 H 1.08005 * 119.96293 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.46646 * 209.99665 * 8 7 6 38 38 H 1.09000 * 109.47248 * 330.00383 * 8 7 6 39 39 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 40 40 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 41 41 H 0.96998 * 119.99578 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47710 * 300.00483 * 13 12 10 43 43 H 1.09000 * 109.46883 * 60.00527 * 13 12 10 44 44 H 1.08999 * 109.46981 * 65.00198 * 16 14 13 45 45 H 1.09003 * 109.47162 * 185.00021 * 16 14 13 46 46 H 0.96695 * 114.00063 * 180.02562 * 17 16 14 47 47 H 0.97007 * 120.00071 * 25.00275 * 18 14 13 48 48 H 0.96999 * 119.99759 * 179.97438 * 22 21 19 49 49 H 1.08001 * 119.96059 * 179.69879 * 27 7 6 50 50 H 1.07994 * 120.03590 * 180.27360 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4704 -2.4135 -0.0005 6 6 2.1641 -3.6077 -0.0005 7 6 3.5470 -3.6059 -0.0011 8 6 4.3004 -4.9110 -0.0017 9 6 4.5549 -5.3524 -1.4444 10 6 5.3089 -6.6571 -1.4449 11 8 5.6124 -7.1826 -0.3948 12 7 5.6451 -7.2407 -2.6125 13 6 6.3785 -8.5088 -2.6130 14 6 6.6329 -8.9502 -4.0557 15 1 5.6820 -9.1668 -4.5425 16 6 7.5051 -10.2072 -4.0582 17 8 8.7024 -9.9577 -3.3192 18 7 7.3194 -7.8781 -4.7806 19 6 7.2090 -7.7928 -6.1428 20 1 6.6155 -8.5157 -6.6828 21 6 7.8599 -6.7771 -6.8297 22 7 8.5836 -5.8964 -6.1717 23 14 7.7088 -6.6604 -8.6879 24 1 6.5421 -5.8107 -9.0372 25 1 8.9451 -6.0583 -9.2482 26 1 7.5188 -8.0195 -9.2554 27 6 4.2399 -2.4092 0.0042 28 6 3.5525 -1.2114 -0.0015 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 2.8241 1.3266 -0.8900 33 1 1.4892 2.0972 0.0005 34 1 2.8242 1.3264 0.8900 35 1 0.3904 -2.4156 -0.0009 36 1 1.6259 -4.5441 -0.0001 37 1 5.2531 -4.7807 0.5118 38 1 3.7115 -5.6708 0.5122 39 1 3.6023 -5.4825 -1.9579 40 1 5.1438 -4.5925 -1.9583 41 1 5.4020 -6.8205 -3.4523 42 1 7.3314 -8.3778 -2.1001 43 1 5.7905 -9.2688 -2.0985 44 1 6.9583 -11.0297 -3.5971 45 1 7.7600 -10.4706 -5.0847 46 1 9.3046 -10.7132 -3.2792 47 1 7.8522 -7.2285 -4.2956 48 1 9.0387 -5.1870 -6.6517 49 1 5.3199 -2.4113 0.0087 50 1 4.0943 -0.2772 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717771139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:05 Heat of formation + Delta-G solvation = -48.727149 kcal Electronic energy + Delta-G solvation = -28041.856434 eV Core-core repulsion = 24069.122827 eV Total energy + Delta-G solvation = -3972.733607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.87111 -39.19208 -37.15942 -36.69549 -34.84839 -33.39841 -33.18943 -31.33504 -31.21493 -29.40437 -28.41481 -28.20606 -25.99991 -24.68345 -23.62881 -22.73272 -22.41814 -20.37454 -20.06514 -19.59549 -17.58691 -17.52223 -16.66931 -16.50945 -16.11567 -15.69324 -15.34035 -15.22981 -15.03564 -14.63409 -14.21095 -14.10710 -13.93036 -13.63515 -13.52465 -13.37192 -13.04820 -12.97466 -12.90829 -12.66529 -12.52541 -12.42598 -12.23463 -11.88277 -11.79683 -11.37286 -11.18043 -11.08278 -10.87741 -10.83076 -10.65391 -10.53413 -10.09318 -9.82906 -9.77647 -9.42703 -9.29669 -8.96844 -8.94246 -8.47395 -7.36736 -7.02440 -5.80591 -3.10720 1.42057 1.53223 2.90055 3.10618 3.39252 3.44763 3.46819 3.67406 3.89731 4.53399 4.65908 4.70071 4.91640 4.93161 4.93659 4.95763 5.03348 5.23911 5.25945 5.28486 5.33974 5.37199 5.40452 5.43809 5.53787 5.55400 5.56109 5.61277 5.68642 5.84650 5.93599 5.96426 6.03944 6.05969 6.09059 6.24620 6.30073 6.39831 6.42833 6.54107 6.77871 6.79036 6.80923 7.02470 7.04317 7.33484 7.63092 8.07261 8.22845 8.36487 8.72366 9.48681 10.04486 10.41112 11.41000 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.002262 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.184590 B =12377.029163 C =14163.945210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.642 5.642 3 C 0.097 3.903 4 C 0.205 3.795 5 C -0.196 4.196 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.055 4.055 9 C -0.135 4.135 10 C 0.509 3.491 11 O -0.558 6.558 12 N -0.715 5.715 13 C 0.119 3.881 14 C 0.165 3.835 15 H 0.065 0.935 16 C 0.060 3.940 17 O -0.560 6.560 18 N -0.713 5.713 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.008 4.008 22 N -0.925 5.925 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.067 4.067 28 C -0.192 4.192 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.409 0.591 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.363 0.637 47 H 0.389 0.611 48 H 0.256 0.744 49 H 0.122 0.878 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.064 8.144 12.717 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.046 4.046 4 C 0.104 3.896 5 C -0.218 4.218 6 C -0.088 4.088 7 C -0.136 4.136 8 C -0.093 4.093 9 C -0.175 4.175 10 C 0.295 3.705 11 O -0.437 6.437 12 N -0.366 5.366 13 C -0.006 4.006 14 C 0.054 3.946 15 H 0.083 0.917 16 C -0.022 4.022 17 O -0.363 6.363 18 N -0.354 5.354 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.209 1.209 27 C -0.085 4.085 28 C -0.214 4.214 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.245 0.755 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.208 0.792 47 H 0.223 0.777 48 H 0.066 0.934 49 H 0.140 0.860 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.261 8.537 13.327 21.986 hybrid contribution 0.333 -0.042 -1.612 1.646 sum -14.928 8.495 11.715 20.791 Atomic orbital electron populations 1.21626 0.79755 1.02550 1.00925 1.46277 1.04820 1.03222 1.81207 1.21571 0.96952 0.84836 1.01235 1.17807 0.91254 0.85507 0.95007 1.20633 0.99359 0.91130 1.10682 1.20803 0.93558 0.97198 0.97197 1.19710 0.93595 0.94916 1.05346 1.20195 1.00467 0.93365 0.95265 1.21660 1.01343 0.95425 0.99080 1.20654 0.79597 0.86466 0.83740 1.90652 1.55912 1.65626 1.31542 1.46035 1.57176 1.24451 1.08930 1.21507 0.96438 0.84774 0.97867 1.20594 0.94355 0.89056 0.90596 0.91739 1.23034 0.86414 0.98086 0.94654 1.86572 1.32389 1.41454 1.75902 1.42366 1.58410 1.30466 1.04189 1.19213 1.25620 1.09734 0.83266 0.91233 1.24748 0.99940 0.98043 0.97788 1.69679 1.35722 1.17453 1.34423 0.86223 0.76989 0.77458 0.85639 1.21695 1.21820 1.20867 1.20860 0.99644 0.91341 0.96702 1.20619 0.91967 0.98558 1.10250 0.93645 0.91752 0.91328 0.92793 0.91118 0.92907 0.86294 0.86171 0.90585 0.90748 0.89184 0.88715 0.75481 0.90753 0.92332 0.95574 0.93385 0.79204 0.77662 0.93445 0.85973 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.16 59.85 0.61 1.22 16 2 N -0.64 -5.70 3.41 -187.55 -0.64 -6.33 16 3 C 0.10 0.65 9.40 59.85 0.56 1.22 16 4 C 0.20 2.23 6.55 -83.79 -0.55 1.68 16 5 C -0.20 -2.08 9.21 -39.38 -0.36 -2.44 16 6 C -0.07 -0.76 9.69 -39.61 -0.38 -1.15 16 7 C -0.13 -1.60 5.14 -104.58 -0.54 -2.14 16 8 C -0.06 -0.70 4.63 -27.88 -0.13 -0.83 16 9 C -0.14 -1.81 5.68 -27.89 -0.16 -1.97 16 10 C 0.51 8.64 7.83 -10.98 -0.09 8.56 16 11 O -0.56 -11.14 15.98 5.56 0.09 -11.05 16 12 N -0.71 -12.40 5.39 -60.30 -0.32 -12.72 16 13 C 0.12 2.16 5.12 -4.04 -0.02 2.14 16 14 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 15 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 16 C 0.06 1.05 6.86 37.16 0.25 1.30 16 17 O -0.56 -10.18 12.64 -35.23 -0.45 -10.62 16 18 N -0.71 -17.04 4.51 -53.42 -0.24 -17.28 16 19 C -0.25 -6.50 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 23 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.07 -0.78 9.69 -39.61 -0.38 -1.17 16 28 C -0.19 -2.13 9.31 -39.38 -0.37 -2.50 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 7.92 -51.93 -0.41 -0.10 16 31 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16 32 H 0.05 0.37 7.95 -51.93 -0.41 -0.04 16 33 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 34 H 0.05 0.34 7.95 -51.93 -0.41 -0.07 16 35 H 0.12 1.04 6.14 -52.49 -0.32 0.72 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.08 1.03 8.04 -51.93 -0.42 0.62 16 38 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.41 7.10 8.14 -40.82 -0.33 6.77 16 42 H 0.07 1.54 7.39 -51.93 -0.38 1.15 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.36 4.77 9.12 45.56 0.42 5.18 16 47 H 0.39 10.35 7.80 -40.82 -0.32 10.03 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 50 H 0.12 1.14 6.73 -52.49 -0.35 0.79 16 LS Contribution 411.79 15.07 6.21 6.21 Total: -1.00 -33.43 411.79 -9.09 -42.51 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -7.44 Total: 19.22 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.99 Total: -0.08 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.48 Total: -62.89 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.36 Total: -21.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.43 -9.09 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717771139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.212 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds