Wall clock time and date at job start Tue Mar 31 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00151 * 2 1 4 4 C 1.39675 * 120.00238 * 180.02562 * 2 1 3 5 5 C 1.38914 * 120.07282 * 359.97438 * 4 2 1 6 6 C 1.38100 * 119.92419 * 180.02562 * 5 4 2 7 7 C 1.38288 * 120.07489 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.92199 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47116 * 90.00252 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46986 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47301 * 295.00412 * 14 13 12 16 16 C 1.53002 * 109.47026 * 175.00318 * 14 13 12 17 17 O 1.42895 * 109.47219 * 304.99790 * 16 14 13 18 18 N 1.46496 * 109.47227 * 55.00051 * 14 13 12 19 19 C 1.36931 * 120.00231 * 204.99833 * 18 14 13 20 20 H 1.08002 * 120.00436 * 0.02562 * 19 18 14 21 21 C 1.38821 * 120.00150 * 180.02562 * 19 18 14 22 22 N 1.31619 * 119.99699 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47110 * 90.00092 * 23 21 19 25 25 H 1.48493 * 109.47232 * 209.99911 * 23 21 19 26 26 H 1.48502 * 109.47112 * 330.00331 * 23 21 19 27 27 C 1.38283 * 120.14964 * 0.27921 * 7 6 5 28 28 C 1.38105 * 120.07446 * 359.44518 * 27 7 6 29 29 H 1.08998 * 109.46621 * 269.99668 * 1 2 3 30 30 H 1.08993 * 109.46992 * 29.99140 * 1 2 3 31 31 H 1.08999 * 109.46988 * 149.99798 * 1 2 3 32 32 H 1.09001 * 109.47746 * 240.00660 * 3 2 1 33 33 H 1.09005 * 109.47027 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.47039 * 120.00326 * 3 2 1 35 35 H 1.07999 * 120.03430 * 0.04715 * 5 4 2 36 36 H 1.08005 * 119.96293 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.46646 * 209.99665 * 8 7 6 38 38 H 1.09000 * 109.47248 * 330.00383 * 8 7 6 39 39 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 40 40 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 41 41 H 0.96998 * 119.99578 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47710 * 300.00483 * 13 12 10 43 43 H 1.09000 * 109.46883 * 60.00527 * 13 12 10 44 44 H 1.08999 * 109.46981 * 65.00198 * 16 14 13 45 45 H 1.09003 * 109.47162 * 185.00021 * 16 14 13 46 46 H 0.96695 * 114.00063 * 180.02562 * 17 16 14 47 47 H 0.97007 * 120.00071 * 25.00275 * 18 14 13 48 48 H 0.96999 * 119.99759 * 179.97438 * 22 21 19 49 49 H 1.08001 * 119.96059 * 179.69879 * 27 7 6 50 50 H 1.07994 * 120.03590 * 180.27360 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4704 -2.4135 -0.0005 6 6 2.1641 -3.6077 -0.0005 7 6 3.5470 -3.6059 -0.0011 8 6 4.3004 -4.9110 -0.0017 9 6 4.5549 -5.3524 -1.4444 10 6 5.3089 -6.6571 -1.4449 11 8 5.6124 -7.1826 -0.3948 12 7 5.6451 -7.2407 -2.6125 13 6 6.3785 -8.5088 -2.6130 14 6 6.6329 -8.9502 -4.0557 15 1 5.6820 -9.1668 -4.5425 16 6 7.5051 -10.2072 -4.0582 17 8 8.7024 -9.9577 -3.3192 18 7 7.3194 -7.8781 -4.7806 19 6 7.2090 -7.7928 -6.1428 20 1 6.6155 -8.5157 -6.6828 21 6 7.8599 -6.7771 -6.8297 22 7 8.5836 -5.8964 -6.1717 23 14 7.7088 -6.6604 -8.6879 24 1 6.5421 -5.8107 -9.0372 25 1 8.9451 -6.0583 -9.2482 26 1 7.5188 -8.0195 -9.2554 27 6 4.2399 -2.4092 0.0042 28 6 3.5525 -1.2114 -0.0015 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 2.8241 1.3266 -0.8900 33 1 1.4892 2.0972 0.0005 34 1 2.8242 1.3264 0.8900 35 1 0.3904 -2.4156 -0.0009 36 1 1.6259 -4.5441 -0.0001 37 1 5.2531 -4.7807 0.5118 38 1 3.7115 -5.6708 0.5122 39 1 3.6023 -5.4825 -1.9579 40 1 5.1438 -4.5925 -1.9583 41 1 5.4020 -6.8205 -3.4523 42 1 7.3314 -8.3778 -2.1001 43 1 5.7905 -9.2688 -2.0985 44 1 6.9583 -11.0297 -3.5971 45 1 7.7600 -10.4706 -5.0847 46 1 9.3046 -10.7132 -3.2792 47 1 7.8522 -7.2285 -4.2956 48 1 9.0387 -5.1870 -6.6517 49 1 5.3199 -2.4113 0.0087 50 1 4.0943 -0.2772 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717771139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:04 Heat of formation + Delta-G solvation = -72.450561 kcal Electronic energy + Delta-G solvation = -28042.885159 eV Core-core repulsion = 24069.122827 eV Total energy + Delta-G solvation = -3973.762332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88010 -40.37637 -38.62494 -37.49417 -36.37077 -35.13417 -34.19521 -33.08817 -32.00369 -30.56155 -29.73711 -28.96723 -27.12635 -25.86566 -25.45370 -23.70339 -23.22472 -21.60739 -21.28878 -20.88625 -19.40104 -18.31414 -18.14895 -17.86121 -17.22469 -16.97258 -16.47944 -16.28158 -15.99047 -15.86189 -15.58084 -15.35926 -14.96689 -14.90004 -14.84752 -14.49657 -14.35076 -14.23277 -13.90024 -13.67147 -13.47218 -13.44585 -13.01917 -12.98543 -12.77810 -12.75664 -12.71898 -12.60946 -12.24416 -12.11282 -12.04360 -11.86274 -11.72079 -11.54167 -11.03269 -10.83053 -10.71236 -10.48542 -9.93803 -9.78144 -8.99081 -8.10762 -7.88789 -5.17824 0.58406 0.67793 1.50846 1.51478 1.59459 1.73524 2.29269 2.38307 2.59003 2.99069 3.43555 3.62653 3.82120 3.92200 3.94099 4.06079 4.12686 4.19038 4.21729 4.22771 4.41076 4.44573 4.47862 4.52559 4.57920 4.61750 4.63407 4.69585 4.72693 4.79206 4.88417 4.89835 4.92047 4.93528 5.01835 5.05102 5.22387 5.25557 5.26174 5.42721 5.54469 5.55788 5.60562 5.89935 6.00219 6.30013 6.40067 6.58987 6.67314 7.07337 7.33701 7.38136 8.10739 8.36271 9.34058 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.002262 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.184590 B =12377.029163 C =14163.945210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.647 5.647 3 C 0.092 3.908 4 C 0.198 3.802 5 C -0.203 4.203 6 C -0.072 4.072 7 C -0.148 4.148 8 C -0.045 4.045 9 C -0.125 4.125 10 C 0.507 3.493 11 O -0.590 6.590 12 N -0.714 5.714 13 C 0.129 3.871 14 C 0.161 3.839 15 H 0.080 0.920 16 C 0.064 3.936 17 O -0.584 6.584 18 N -0.722 5.722 19 C -0.235 4.235 20 H 0.081 0.919 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.969 3.031 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.270 1.270 27 C -0.079 4.079 28 C -0.204 4.204 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.410 0.590 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.248 0.752 49 H 0.123 0.877 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.227 7.919 12.355 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.359 5.359 3 C -0.051 4.051 4 C 0.096 3.904 5 C -0.225 4.225 6 C -0.091 4.091 7 C -0.150 4.150 8 C -0.083 4.083 9 C -0.165 4.165 10 C 0.295 3.705 11 O -0.471 6.471 12 N -0.365 5.365 13 C 0.005 3.995 14 C 0.051 3.949 15 H 0.097 0.903 16 C -0.017 4.017 17 O -0.391 6.391 18 N -0.362 5.362 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.799 3.201 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.195 1.195 27 C -0.097 4.097 28 C -0.227 4.227 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.246 0.754 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.233 0.767 47 H 0.204 0.796 48 H 0.057 0.943 49 H 0.140 0.860 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.467 8.268 12.965 23.271 hybrid contribution 0.954 0.000 -1.408 1.701 sum -16.512 8.269 11.557 21.785 Atomic orbital electron populations 1.21796 0.78366 1.03548 1.01646 1.46565 1.05909 1.03113 1.80346 1.21706 0.97536 0.84730 1.01079 1.18027 0.91397 0.86606 0.94392 1.20872 1.00354 0.90861 1.10410 1.20997 0.93231 0.98149 0.96674 1.19641 0.94084 0.94311 1.06965 1.20062 0.99840 0.93928 0.94508 1.21654 1.01721 0.93214 0.99922 1.21244 0.79084 0.87160 0.82964 1.90633 1.57238 1.66705 1.32527 1.46060 1.56933 1.24344 1.09167 1.21336 0.95560 0.85614 0.97030 1.20854 0.94814 0.88579 0.90616 0.90250 1.22883 0.86373 0.97926 0.94473 1.86525 1.33228 1.43450 1.75898 1.42469 1.58559 1.31476 1.03653 1.19610 1.23888 1.08800 0.84414 0.90090 1.25490 1.00766 0.98474 1.01751 1.69845 1.37663 1.18455 1.35729 0.85211 0.76220 0.77712 0.80976 1.21362 1.23102 1.19541 1.20980 0.99897 0.91770 0.97079 1.20772 0.92504 0.98711 1.10678 0.92987 0.89933 0.91218 0.93124 0.88872 0.92893 0.84494 0.84770 0.92089 0.90939 0.87027 0.88650 0.75388 0.93477 0.90630 0.91675 0.94550 0.76712 0.79607 0.94312 0.85950 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.16 127.77 1.30 2.24 16 2 N -0.65 -10.38 3.41 -747.28 -2.55 -12.93 16 3 C 0.09 1.09 9.40 127.77 1.20 2.30 16 4 C 0.20 4.10 6.55 38.21 0.25 4.35 16 5 C -0.20 -4.01 9.21 22.40 0.21 -3.81 16 6 C -0.07 -1.51 9.69 22.25 0.22 -1.30 16 7 C -0.15 -3.50 5.14 -19.84 -0.10 -3.60 16 8 C -0.05 -1.16 4.63 29.85 0.14 -1.02 16 9 C -0.13 -3.31 5.68 29.85 0.17 -3.14 16 10 C 0.51 17.17 7.83 87.65 0.69 17.86 16 11 O -0.59 -23.69 15.98 -3.03 -0.05 -23.74 16 12 N -0.71 -24.53 5.39 -463.06 -2.50 -27.02 16 13 C 0.13 4.62 5.12 86.38 0.44 5.06 16 14 C 0.16 5.95 2.84 44.99 0.13 6.08 16 15 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 16 C 0.06 2.12 6.86 71.98 0.49 2.62 16 17 O -0.58 -20.60 12.64 -148.98 -1.88 -22.48 16 18 N -0.72 -34.32 4.51 -322.94 -1.46 -35.77 16 19 C -0.24 -12.21 9.93 84.04 0.83 -11.37 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 22 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 23 Si 0.97 44.70 29.55 68.60 2.03 46.72 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C -0.08 -1.86 9.69 22.25 0.22 -1.64 16 28 C -0.20 -4.48 9.31 22.40 0.21 -4.27 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.58 7.92 -2.39 -0.02 0.56 16 31 H 0.07 0.72 6.20 -2.39 -0.01 0.71 16 32 H 0.05 0.64 7.95 -2.39 -0.02 0.62 16 33 H 0.09 0.67 7.79 -2.38 -0.02 0.65 16 34 H 0.05 0.63 7.95 -2.38 -0.02 0.61 16 35 H 0.14 2.12 6.14 -2.91 -0.02 2.10 16 36 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.06 1.71 8.04 -2.39 -0.02 1.70 16 38 H 0.07 1.85 8.04 -2.39 -0.02 1.84 16 39 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 41 H 0.41 14.05 8.14 -92.71 -0.75 13.29 16 42 H 0.05 1.96 7.39 -2.39 -0.02 1.94 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.38 9.53 9.12 -74.06 -0.68 8.85 16 47 H 0.37 20.14 7.80 -92.70 -0.72 19.41 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.12 2.75 8.06 -2.91 -0.02 2.72 16 50 H 0.13 2.43 6.73 -2.91 -0.02 2.41 16 Total: -1.00 -71.76 411.79 -0.46 -72.22 By element: Atomic # 1 Polarization: 55.14 SS G_CDS: -1.19 Total: 53.95 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.85 Total: 6.82 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -6.22 Total: -133.48 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.93 Total: -46.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.76 -0.46 -72.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717771139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.232 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds