Wall clock time and date at job start Tue Mar 31 2020 18:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00352 * 2 1 4 4 O 1.21279 * 119.99651 * 355.23327 * 3 2 1 5 5 C 1.50700 * 120.00446 * 175.23336 * 3 2 1 6 6 C 1.50697 * 115.54758 * 39.90640 * 5 3 2 7 7 O 1.21287 * 119.99585 * 246.10197 * 6 5 3 8 8 N 1.34767 * 120.00272 * 66.10819 * 6 5 3 9 9 C 1.48244 * 125.78137 * 355.14933 * 8 6 5 10 10 C 1.52334 * 105.86821 * 176.78589 * 9 8 6 11 11 H 1.08999 * 109.88517 * 272.32616 * 10 9 8 12 12 C 1.51441 * 117.44848 * 145.79386 * 10 9 8 13 13 C 1.53865 * 107.03270 * 181.61120 * 12 10 9 14 14 C 1.52523 * 112.03325 * 56.51067 * 13 12 10 15 15 C 1.53817 * 111.69855 * 306.21322 * 14 13 12 16 16 H 1.08995 * 109.94486 * 298.15597 * 15 14 13 17 17 N 1.46500 * 110.01548 * 176.95275 * 15 14 13 18 18 C 1.36931 * 120.00264 * 87.37942 * 17 15 14 19 19 H 1.07999 * 120.00039 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00037 * 180.02562 * 18 17 15 21 21 N 1.31626 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47001 * 59.99950 * 22 20 18 24 24 H 1.48493 * 109.46968 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46999 * 300.00018 * 22 20 18 26 26 C 1.51619 * 107.02282 * 57.53250 * 15 14 13 27 27 H 1.08998 * 110.49687 * 55.19309 * 26 15 14 28 28 C 1.48657 * 125.78670 * 174.84509 * 8 6 5 29 29 C 1.53003 * 117.49663 * 254.19848 * 5 3 2 30 30 C 1.52996 * 60.00164 * 252.50976 * 29 5 3 31 31 H 1.08998 * 109.46872 * 179.72454 * 1 2 3 32 32 H 1.09001 * 109.46618 * 299.72547 * 1 2 3 33 33 H 1.08996 * 109.46939 * 59.72450 * 1 2 3 34 34 H 0.97000 * 120.00159 * 180.27150 * 2 1 3 35 35 H 1.08997 * 110.17140 * 295.88427 * 9 8 6 36 36 H 1.08996 * 110.17249 * 57.69232 * 9 8 6 37 37 H 1.09010 * 109.93611 * 300.63064 * 12 10 9 38 38 H 1.08997 * 109.94000 * 61.86417 * 12 10 9 39 39 H 1.09008 * 108.64851 * 295.97676 * 13 12 10 40 40 H 1.09000 * 109.00060 * 177.28351 * 13 12 10 41 41 H 1.08997 * 109.03805 * 185.63815 * 14 13 12 42 42 H 1.09001 * 108.97469 * 66.73886 * 14 13 12 43 43 H 0.97006 * 119.99876 * 267.37566 * 17 15 14 44 44 H 0.96998 * 119.99961 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.62953 * 274.13465 * 28 8 6 46 46 H 1.09001 * 110.63020 * 37.15779 * 28 8 6 47 47 H 1.08997 * 117.50157 * 0.02562 * 29 5 3 48 48 H 1.08997 * 117.49607 * 145.01945 * 29 5 3 49 49 H 1.08999 * 117.50047 * 252.51324 * 30 29 5 50 50 H 1.09006 * 117.49999 * 107.48667 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5357 2.2157 -0.0873 5 6 3.6420 1.1694 0.1084 6 6 4.3515 0.0921 -0.6707 7 8 4.9577 -0.7802 -0.0853 8 7 4.3124 0.0980 -2.0178 9 6 3.5317 1.0370 -2.8582 10 6 3.8793 0.6925 -4.3008 11 1 4.7646 1.2473 -4.6115 12 6 2.7861 0.8447 -5.3377 13 6 3.3787 0.3993 -6.6860 14 6 3.9270 -1.0228 -6.6282 15 6 4.9335 -1.1979 -5.4783 16 1 5.7891 -0.5398 -5.6296 17 7 5.3811 -2.5913 -5.4115 18 6 6.4484 -3.0044 -6.1633 19 1 6.9605 -2.3030 -6.8052 20 6 6.8720 -4.3248 -6.1003 21 7 6.2476 -5.1798 -5.3183 22 14 8.3285 -4.8883 -7.1254 23 1 9.5328 -4.1066 -6.7460 24 1 8.5772 -6.3316 -6.8805 25 1 8.0329 -4.6747 -8.5649 26 6 4.2136 -0.8239 -4.1974 27 1 3.3029 -1.4122 -4.0858 28 6 5.0499 -0.8319 -2.9129 29 6 4.2532 1.5940 1.4453 30 6 4.3392 2.5256 0.2347 31 1 -0.3633 -1.0276 -0.0049 32 1 -0.3632 0.5096 0.8925 33 1 -0.3633 0.5181 -0.8875 34 1 1.9500 -0.8400 -0.0040 35 1 2.4646 0.8979 -2.6853 36 1 3.8180 2.0654 -2.6381 37 1 1.9394 0.2078 -5.0813 38 1 2.4669 1.8855 -5.3913 39 1 4.1858 1.0810 -6.9543 40 1 2.6020 0.4502 -7.4491 41 1 4.4221 -1.2516 -7.5719 42 1 3.0987 -1.7165 -6.4842 43 1 4.9213 -3.2212 -4.8345 44 1 6.5439 -6.1024 -5.2740 45 1 6.0570 -0.4619 -3.1054 46 1 5.0833 -1.8331 -2.4831 47 1 3.5681 1.8713 2.2465 48 1 5.1686 1.0940 1.7616 49 1 5.3111 2.6384 -0.2455 50 1 3.7106 3.4161 0.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717850179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:07 Heat of formation + Delta-G solvation = -33.623841 kcal Electronic energy + Delta-G solvation = -30627.545255 eV Core-core repulsion = 26655.466576 eV Total energy + Delta-G solvation = -3972.078679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04812 -39.87676 -38.59876 -36.25789 -35.56701 -34.80082 -34.00854 -31.55829 -30.64241 -29.04139 -27.94446 -26.82160 -25.47325 -23.92182 -23.15574 -22.76136 -21.42221 -20.85862 -20.28317 -19.78204 -19.41376 -18.01390 -17.14108 -16.43864 -16.17295 -15.91163 -15.47267 -15.06718 -14.94930 -14.83553 -14.29251 -14.26529 -14.02230 -13.81690 -13.40942 -13.14043 -13.07550 -12.87591 -12.56166 -12.47113 -12.46118 -12.16333 -12.01227 -11.86050 -11.46581 -11.33778 -11.02140 -10.90371 -10.84549 -10.77821 -10.56771 -10.34869 -10.28374 -10.23656 -10.16345 -9.83428 -9.74332 -9.49294 -9.43189 -8.90504 -8.63215 -6.98778 -5.77962 -3.07290 2.16065 2.38907 2.75889 2.82985 3.43020 3.47819 3.48696 3.56522 4.16820 4.36248 4.45751 4.50585 4.53315 4.56053 4.78335 4.90382 4.96253 5.20471 5.21654 5.28216 5.35097 5.38207 5.40144 5.47426 5.50247 5.54392 5.54804 5.57911 5.69253 5.81257 5.81847 5.84308 5.89103 6.03573 6.06043 6.07800 6.11345 6.17270 6.24286 6.40312 6.50338 6.56653 6.60291 6.83213 7.05064 7.11833 7.46311 7.68052 7.85744 8.05737 8.39905 9.51467 10.07598 10.42243 11.44293 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.003284 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.150320 B = 8524.744640 C = 9330.639322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.561 3.439 4 O -0.532 6.532 5 C -0.198 4.198 6 C 0.561 3.439 7 O -0.528 6.528 8 N -0.612 5.612 9 C 0.113 3.887 10 C -0.107 4.107 11 H 0.083 0.917 12 C -0.100 4.100 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.196 3.804 16 H 0.052 0.948 17 N -0.722 5.722 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.101 4.101 27 H 0.081 0.919 28 C 0.124 3.876 29 C -0.121 4.121 30 C -0.127 4.127 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.108 0.892 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 15.716 9.096 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.347 3.653 4 O -0.409 6.409 5 C -0.204 4.204 6 C 0.348 3.652 7 O -0.404 6.404 8 N -0.346 5.346 9 C -0.010 4.010 10 C -0.126 4.126 11 H 0.102 0.898 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.179 4.179 15 C 0.085 3.915 16 H 0.070 0.930 17 N -0.362 5.362 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.121 4.121 27 H 0.099 0.901 28 C 0.003 3.997 29 C -0.158 4.158 30 C -0.164 4.164 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.125 0.875 48 H 0.133 0.867 49 H 0.126 0.874 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.425 15.927 9.339 21.203 hybrid contribution 0.720 -1.111 -0.555 1.435 sum -9.705 14.816 8.784 19.770 Atomic orbital electron populations 1.21584 0.78933 1.02665 1.02377 1.45757 1.08071 1.08778 1.75324 1.19030 0.86936 0.83804 0.75564 1.90704 1.69373 1.31379 1.49398 1.21487 0.92915 1.00446 1.05564 1.18737 0.80851 0.84813 0.80848 1.90761 1.43989 1.37130 1.68538 1.49169 1.46897 1.34117 1.04385 1.21764 0.95569 0.93024 0.90635 1.21872 1.00243 0.97681 0.92801 0.89826 1.21281 0.97044 1.00751 0.94674 1.21546 0.99741 0.98002 0.95932 1.22313 0.99789 0.94327 1.01440 1.19966 0.93604 0.88198 0.89733 0.93000 1.42388 1.36327 1.04908 1.52536 1.19166 1.05897 0.93675 1.18493 0.91263 1.24724 0.99580 0.96290 1.00059 1.69646 1.42614 1.03970 1.41696 0.86307 0.82643 0.77581 0.79877 1.21264 1.21730 1.21332 1.22420 0.99611 0.94961 0.95156 0.90114 1.22075 0.94974 0.93995 0.88608 1.23049 1.02682 1.00532 0.89567 1.23092 1.01439 0.91512 1.00396 0.90317 0.92118 0.91893 0.75946 0.91723 0.91115 0.91847 0.91986 0.92566 0.92665 0.91942 0.92789 0.78218 0.93445 0.90717 0.89504 0.87456 0.86650 0.87402 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.71 59.85 0.64 1.35 16 2 N -0.73 -7.55 5.65 -67.08 -0.38 -7.93 16 3 C 0.56 6.79 6.16 -10.99 -0.07 6.73 16 4 O -0.53 -7.56 16.28 5.56 0.09 -7.47 16 5 C -0.20 -2.31 1.80 -156.81 -0.28 -2.59 16 6 C 0.56 8.06 6.41 -10.99 -0.07 7.99 16 7 O -0.53 -9.40 16.99 5.55 0.09 -9.30 16 8 N -0.61 -8.48 3.38 -170.73 -0.58 -9.06 16 9 C 0.11 1.33 5.81 -3.42 -0.02 1.31 16 10 C -0.11 -1.29 2.27 -90.35 -0.21 -1.49 16 11 H 0.08 1.01 7.94 -51.93 -0.41 0.60 16 12 C -0.10 -1.10 5.74 -27.07 -0.16 -1.26 16 13 C -0.11 -1.42 5.82 -26.53 -0.15 -1.57 16 14 C -0.14 -2.25 5.48 -26.55 -0.15 -2.40 16 15 C 0.20 3.55 2.51 -68.20 -0.17 3.38 16 16 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 17 N -0.72 -17.03 5.08 -53.70 -0.27 -17.31 16 18 C -0.24 -6.43 9.95 -15.06 -0.15 -6.58 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 22 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.10 -1.54 2.03 -89.78 -0.18 -1.72 16 27 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 28 C 0.12 2.00 6.52 -2.70 -0.02 1.98 16 29 C -0.12 -1.17 9.76 -26.73 -0.26 -1.43 16 30 C -0.13 -1.22 9.75 -26.73 -0.26 -1.48 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.41 4.15 8.22 -40.82 -0.34 3.82 16 35 H 0.06 0.77 7.49 -51.93 -0.39 0.38 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.71 8.06 -51.92 -0.42 0.29 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.38 9.79 7.81 -40.82 -0.32 9.47 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 47 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.12 1.14 8.01 -51.93 -0.42 0.73 16 49 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.12 1.08 7.68 -51.93 -0.40 0.69 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -32.06 400.56 -9.46 -41.52 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.55 Total: 11.52 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.60 Total: 1.82 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.50 Total: -61.18 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.18 Total: -16.78 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.06 -9.46 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717850179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.898 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds