Wall clock time and date at job start Tue Mar 31 2020 18:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00523 * 2 1 4 4 O 1.21282 * 119.99733 * 355.06394 * 3 2 1 5 5 C 1.50695 * 120.00548 * 175.05834 * 3 2 1 6 6 C 1.50700 * 115.55185 * 301.19424 * 5 3 2 7 7 O 1.21283 * 120.00266 * 100.33849 * 6 5 3 8 8 N 1.34785 * 119.99723 * 280.33530 * 6 5 3 9 9 C 1.48235 * 125.78420 * 354.83590 * 8 6 5 10 10 C 1.52324 * 105.86953 * 176.82086 * 9 8 6 11 11 H 1.09008 * 109.88423 * 271.82745 * 10 9 8 12 12 C 1.51444 * 117.45294 * 145.29715 * 10 9 8 13 13 C 1.53836 * 107.04480 * 181.23508 * 12 10 9 14 14 C 1.52524 * 111.66524 * 57.19601 * 13 12 10 15 15 C 1.53817 * 111.70517 * 305.96370 * 14 13 12 16 16 H 1.09001 * 109.94603 * 176.98759 * 15 14 13 17 17 N 1.46500 * 109.94546 * 298.15368 * 15 14 13 18 18 C 1.36934 * 120.00272 * 208.60749 * 17 15 14 19 19 H 1.07997 * 119.99732 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99802 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99530 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00053 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46895 * 90.00369 * 22 20 18 24 24 H 1.48505 * 109.46698 * 209.99602 * 22 20 18 25 25 H 1.48496 * 109.47281 * 329.99861 * 22 20 18 26 26 C 1.51619 * 107.01897 * 57.52952 * 15 14 13 27 27 H 1.09006 * 110.50598 * 55.19799 * 26 15 14 28 28 C 1.48657 * 125.78052 * 174.52509 * 8 6 5 29 29 C 1.53005 * 117.51859 * 86.88736 * 5 3 2 30 30 C 1.53004 * 117.50138 * 155.51745 * 5 3 2 31 31 H 1.09003 * 109.46704 * 60.00282 * 1 2 3 32 32 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47195 * 300.00480 * 1 2 3 34 34 H 0.97001 * 120.00183 * 179.97438 * 2 1 3 35 35 H 1.09011 * 110.17137 * 295.91867 * 9 8 6 36 36 H 1.09004 * 110.17562 * 57.63995 * 9 8 6 37 37 H 1.08998 * 109.93810 * 300.62257 * 12 10 9 38 38 H 1.09004 * 109.93802 * 61.76631 * 12 10 9 39 39 H 1.08995 * 109.04458 * 177.76163 * 13 12 10 40 40 H 1.09008 * 109.04421 * 296.71094 * 13 12 10 41 41 H 1.09006 * 109.03380 * 66.53295 * 14 13 12 42 42 H 1.09001 * 109.03970 * 185.45915 * 14 13 12 43 43 H 0.97001 * 119.99428 * 28.60081 * 17 15 14 44 44 H 0.96997 * 119.99513 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.62557 * 274.09990 * 28 8 6 46 46 H 1.08994 * 110.63451 * 37.12494 * 28 8 6 47 47 H 1.09000 * 117.50081 * 214.97335 * 29 5 3 48 48 H 1.09005 * 117.49824 * 359.97438 * 29 5 3 49 49 H 1.08997 * 117.49540 * 359.97438 * 30 5 3 50 50 H 1.08999 * 117.49768 * 144.97851 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5359 2.2155 -0.0904 5 6 3.6417 1.1695 0.1124 6 6 4.2020 0.5171 1.3499 7 8 4.6408 -0.6122 1.2944 8 7 4.2155 1.1887 2.5185 9 6 3.8150 2.6030 2.7100 10 6 3.9290 2.8693 4.2055 11 1 2.9930 2.6105 4.7006 12 6 4.3745 4.2511 4.6366 13 6 4.4367 4.2456 6.1737 14 6 5.3700 3.1580 6.6957 15 6 5.0003 1.7741 6.1353 16 1 5.7156 1.0288 6.4832 17 7 3.6482 1.4066 6.5631 18 6 3.3126 0.0876 6.7144 19 1 4.0447 -0.6817 6.5179 20 6 2.0316 -0.2604 7.1203 21 7 1.7090 -1.5282 7.2652 22 14 0.7658 1.0704 7.4608 23 1 0.0197 1.3745 6.2134 24 1 -0.1820 0.5973 8.5016 25 1 1.4533 2.2970 7.9381 26 6 5.0539 1.8786 4.6237 27 1 6.0287 2.2442 4.3005 28 6 4.6284 0.6347 3.8347 29 6 4.4476 1.0387 -1.1816 30 6 4.3902 2.3804 -0.4484 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.9500 -0.8400 0.0004 35 1 4.4862 3.2618 2.1587 36 1 2.7874 2.7510 2.3780 37 1 5.3602 4.4690 4.2255 38 1 3.6564 4.9966 4.2950 39 1 4.7935 5.2160 6.5187 40 1 3.4357 4.0738 6.5696 41 1 6.3928 3.3976 6.4048 42 1 5.3078 3.1281 7.7835 43 1 2.9907 2.0977 6.7393 44 1 0.8140 -1.7714 7.5492 45 1 3.7901 0.1362 4.3215 46 1 5.4679 -0.0504 3.7168 47 1 5.3830 0.4808 -1.1377 48 1 3.8908 0.9504 -2.1145 49 1 3.7956 3.1751 -0.8991 50 1 5.2876 2.7054 0.0780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717850180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:11 Heat of formation + Delta-G solvation = -25.009422 kcal Electronic energy + Delta-G solvation = -31350.367250 eV Core-core repulsion = 27378.662120 eV Total energy + Delta-G solvation = -3971.705129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85676 -39.84746 -38.48429 -36.14736 -35.54937 -34.63827 -33.77736 -31.53627 -30.50811 -29.46954 -27.74647 -27.06069 -25.39846 -23.81207 -22.85242 -22.69126 -21.38876 -20.96845 -20.58462 -19.28079 -18.84787 -17.67803 -17.63316 -16.32154 -16.05388 -15.89274 -15.35326 -14.98654 -14.85104 -14.59685 -14.51724 -14.24587 -14.03869 -13.65845 -13.29889 -12.95865 -12.87094 -12.71570 -12.46310 -12.43928 -12.37415 -12.06393 -11.91578 -11.79494 -11.53602 -11.35278 -11.24560 -11.00701 -10.80456 -10.74009 -10.52573 -10.38884 -10.16508 -10.15065 -10.05396 -9.58165 -9.55703 -9.45247 -9.24235 -8.96719 -8.32771 -7.32773 -5.81713 -3.17013 2.26500 2.67840 2.95115 3.06100 3.32101 3.34536 3.41423 3.60869 4.34138 4.47669 4.53755 4.56996 4.65811 4.74089 4.91542 5.02592 5.13748 5.24655 5.33146 5.37822 5.40629 5.43171 5.47300 5.51646 5.56389 5.60153 5.68690 5.70660 5.78138 5.83791 5.85251 5.87749 5.89809 5.98088 6.13241 6.22254 6.25110 6.26716 6.41524 6.46308 6.48987 6.64328 6.70113 6.74713 6.97160 7.31628 7.71137 7.95132 8.04528 8.26170 8.37362 9.15788 9.88303 10.08032 11.36163 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.004774 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.509879 B = 5863.892432 C = 6989.520964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.725 5.725 3 C 0.562 3.438 4 O -0.531 6.531 5 C -0.191 4.191 6 C 0.566 3.434 7 O -0.536 6.536 8 N -0.606 5.606 9 C 0.115 3.885 10 C -0.108 4.108 11 H 0.094 0.906 12 C -0.099 4.099 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.194 3.806 16 H 0.064 0.936 17 N -0.741 5.741 18 C -0.244 4.244 19 H 0.093 0.907 20 C 0.009 3.991 21 N -0.929 5.929 22 Si 0.876 3.124 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.117 4.117 27 H 0.070 0.930 28 C 0.116 3.884 29 C -0.128 4.128 30 C -0.132 4.132 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.408 0.592 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 10.014 -14.086 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.376 5.376 3 C 0.347 3.653 4 O -0.407 6.407 5 C -0.198 4.198 6 C 0.352 3.648 7 O -0.413 6.413 8 N -0.339 5.339 9 C -0.008 4.008 10 C -0.127 4.127 11 H 0.112 0.888 12 C -0.137 4.137 13 C -0.153 4.153 14 C -0.164 4.164 15 C 0.083 3.917 16 H 0.082 0.918 17 N -0.384 5.384 18 C -0.373 4.373 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.707 3.293 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.139 4.139 27 H 0.089 0.911 28 C -0.004 4.004 29 C -0.166 4.166 30 C -0.169 4.169 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.125 0.875 46 H 0.087 0.913 47 H 0.130 0.870 48 H 0.124 0.876 49 H 0.132 0.868 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.976 9.848 -14.174 17.962 hybrid contribution -1.030 0.433 0.344 1.168 sum 3.947 10.280 -13.830 17.679 Atomic orbital electron populations 1.21593 0.78996 1.02672 1.02373 1.45722 1.08007 1.08870 1.75024 1.18988 0.86797 0.83834 0.75719 1.90699 1.69302 1.31444 1.49274 1.21438 0.92834 1.08446 0.97057 1.18571 0.79059 0.85125 0.82064 1.90715 1.47624 1.18246 1.84704 1.49152 1.64051 1.12860 1.07823 1.21744 1.00008 0.81753 0.97274 1.21850 1.01301 0.96032 0.93545 0.88825 1.21269 1.00789 0.95659 0.95963 1.21480 1.00567 0.98321 0.94948 1.21851 0.98577 0.95199 1.00744 1.19880 0.88311 0.93800 0.89689 0.91776 1.42822 1.08732 1.05032 1.81825 1.19060 0.97033 0.82629 1.38627 0.88973 1.24647 0.97195 0.95446 1.01451 1.69695 1.20122 1.14637 1.53205 0.86682 0.82512 0.82130 0.78011 1.21168 1.21751 1.20268 1.22840 0.96995 0.94802 0.99297 0.91147 1.22357 1.01830 0.96050 0.80204 1.23054 1.01110 0.99798 0.92652 1.23074 1.01072 0.91383 1.01372 0.92092 0.90294 0.91938 0.75731 0.91717 0.91441 0.91955 0.92118 0.92472 0.92176 0.92268 0.91714 0.80458 0.93066 0.87454 0.91290 0.87010 0.87563 0.86825 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.71 59.85 0.64 1.61 16 2 N -0.73 -9.38 5.70 -67.08 -0.38 -9.77 16 3 C 0.56 8.25 7.11 -10.99 -0.08 8.18 16 4 O -0.53 -8.99 16.55 5.56 0.09 -8.90 16 5 C -0.19 -2.57 1.63 -156.81 -0.26 -2.82 16 6 C 0.57 9.40 7.00 -10.98 -0.08 9.32 16 7 O -0.54 -10.37 17.26 5.55 0.10 -10.28 16 8 N -0.61 -10.08 3.38 -170.70 -0.58 -10.66 16 9 C 0.11 1.68 5.85 -3.43 -0.02 1.66 16 10 C -0.11 -1.62 2.21 -90.36 -0.20 -1.82 16 11 H 0.09 1.70 6.59 -51.92 -0.34 1.35 16 12 C -0.10 -1.21 5.70 -27.08 -0.15 -1.36 16 13 C -0.12 -1.50 5.58 -26.54 -0.15 -1.65 16 14 C -0.13 -1.75 5.51 -26.55 -0.15 -1.90 16 15 C 0.19 3.33 3.01 -68.20 -0.21 3.13 16 16 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 17 N -0.74 -15.82 3.64 -53.69 -0.20 -16.02 16 18 C -0.24 -6.36 8.56 -15.06 -0.13 -6.49 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 21 N -0.93 -28.35 13.97 55.49 0.78 -27.58 16 22 Si 0.88 21.48 27.73 -169.99 -4.71 16.77 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 26 C -0.12 -1.84 2.37 -89.76 -0.21 -2.06 16 27 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16 28 C 0.12 2.12 6.46 -2.68 -0.02 2.11 16 29 C -0.13 -1.32 9.86 -26.73 -0.26 -1.58 16 30 C -0.13 -1.39 8.82 -26.73 -0.24 -1.62 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.41 4.88 8.83 -40.82 -0.36 4.52 16 35 H 0.06 0.80 7.35 -51.92 -0.38 0.42 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.89 7.02 -51.92 -0.36 0.52 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.36 7.76 3.84 -40.82 -0.16 7.60 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.11 2.40 6.14 -51.93 -0.32 2.08 16 46 H 0.07 1.29 8.02 -51.93 -0.42 0.87 16 47 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.11 1.16 7.88 -51.93 -0.41 0.75 16 50 H 0.11 1.03 7.85 -51.93 -0.41 0.62 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -32.68 390.28 -8.85 -41.53 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -8.23 Total: 14.18 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.60 Total: 4.84 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.38 Total: -64.02 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.19 Total: -19.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.68 -8.85 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717850180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.524 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds