Wall clock time and date at job start Tue Mar 31 2020 18:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34771 * 120.00192 * 2 1 4 4 O 1.21274 * 120.00249 * 354.90620 * 3 2 1 5 5 C 1.50699 * 119.99912 * 174.91260 * 3 2 1 6 6 C 1.50707 * 115.54583 * 293.80446 * 5 3 2 7 7 O 1.21283 * 119.99492 * 117.34400 * 6 5 3 8 8 N 1.34770 * 120.00003 * 297.33425 * 6 5 3 9 9 C 1.47619 * 125.72808 * 354.37688 * 8 6 5 10 10 C 1.55842 * 104.47072 * 204.85911 * 9 8 6 11 11 H 1.08999 * 113.43392 * 201.15784 * 10 9 8 12 12 C 1.52991 * 106.36252 * 77.05552 * 10 9 8 13 13 C 1.52626 * 110.93257 * 198.11026 * 12 10 9 14 14 C 1.53303 * 108.50264 * 62.20349 * 13 12 10 15 15 C 1.52840 * 108.21671 * 296.20730 * 14 13 12 16 16 H 1.08997 * 109.06159 * 298.59716 * 15 14 13 17 17 N 1.46498 * 109.05917 * 179.59555 * 15 14 13 18 18 C 1.36940 * 119.99743 * 84.72926 * 17 15 14 19 19 H 1.08004 * 120.00023 * 0.27425 * 18 17 15 20 20 C 1.38814 * 120.00060 * 180.27168 * 18 17 15 21 21 N 1.31622 * 119.99802 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47110 * 120.00164 * 22 20 18 25 25 H 1.48495 * 109.47145 * 240.00376 * 22 20 18 26 26 C 1.50895 * 111.56273 * 59.06285 * 15 14 13 27 27 H 1.09005 * 109.03000 * 186.17750 * 26 15 14 28 28 C 1.47430 * 125.72709 * 174.36610 * 8 6 5 29 29 C 1.52995 * 117.50302 * 79.47485 * 5 3 2 30 30 C 1.52999 * 117.50263 * 148.13928 * 5 3 2 31 31 H 1.08993 * 109.47732 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46954 * 300.00333 * 1 2 3 33 33 H 1.09001 * 109.47358 * 59.99821 * 1 2 3 34 34 H 0.97002 * 119.99572 * 180.02562 * 2 1 3 35 35 H 1.09004 * 110.43524 * 86.11546 * 9 8 6 36 36 H 1.08998 * 110.43306 * 323.61123 * 9 8 6 37 37 H 1.09004 * 109.18711 * 77.73931 * 12 10 9 38 38 H 1.09000 * 109.18557 * 318.48538 * 12 10 9 39 39 H 1.08998 * 109.62835 * 302.50353 * 13 12 10 40 40 H 1.08993 * 109.63218 * 181.91159 * 13 12 10 41 41 H 1.08999 * 109.70930 * 176.52864 * 14 13 12 42 42 H 1.08996 * 109.71608 * 55.89158 * 14 13 12 43 43 H 0.96992 * 120.00308 * 265.00109 * 17 15 14 44 44 H 0.96999 * 119.99721 * 180.02562 * 21 20 18 45 45 H 1.09007 * 110.04056 * 60.07453 * 28 8 6 46 46 H 1.09005 * 110.05052 * 298.60496 * 28 8 6 47 47 H 1.09004 * 117.49939 * 215.00730 * 29 5 3 48 48 H 1.09002 * 117.50332 * 0.02562 * 29 5 3 49 49 H 1.08997 * 117.49655 * 359.96720 * 30 5 3 50 50 H 1.08999 * 117.50511 * 144.97412 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5361 2.2154 -0.0932 5 6 3.6414 1.1696 0.1157 6 6 4.1929 0.6776 1.4291 7 8 4.8909 -0.3137 1.4604 8 7 3.9105 1.3392 2.5688 9 6 3.1771 2.6167 2.6648 10 6 3.6664 3.2471 4.0034 11 1 2.9811 3.9919 4.4078 12 6 5.0566 3.8225 3.7260 13 6 5.8170 4.0624 5.0274 14 6 6.0099 2.7154 5.7336 15 6 4.6317 2.1687 6.1045 16 1 4.1452 2.8641 6.7884 17 7 4.7941 0.8752 6.7728 18 6 5.0419 0.8263 8.1187 19 1 5.1133 1.7412 8.6882 20 6 5.2015 -0.3991 8.7510 21 7 5.1150 -1.5140 8.0568 22 14 5.5403 -0.4658 10.5868 23 1 5.5903 0.9149 11.1314 24 1 4.4577 -1.2251 11.2627 25 1 6.8415 -1.1401 10.8258 26 6 3.7605 1.9877 4.8858 27 1 2.7577 1.7032 5.2047 28 6 4.2819 0.9085 3.9289 29 6 4.4478 0.8640 -1.1480 30 6 4.4029 2.2905 -0.5946 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.9499 -0.8401 -0.0004 35 1 2.1025 2.4371 2.6992 36 1 3.4289 3.2641 1.8248 37 1 4.9533 4.7672 3.1922 38 1 5.6174 3.1219 3.1074 39 1 5.2442 4.7329 5.6680 40 1 6.7893 4.5031 4.8075 41 1 6.6050 2.8553 6.6360 42 1 6.5141 2.0183 5.0644 43 1 4.7300 0.0536 6.2613 44 1 5.2261 -2.3703 8.4987 45 1 5.3658 0.8273 4.0121 46 1 3.8163 -0.0502 4.1576 47 1 5.3773 0.3070 -1.0295 48 1 3.8917 0.6615 -2.0633 49 1 3.8171 3.0258 -1.1462 50 1 5.3025 2.6723 -0.1120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717850181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:14 Heat of formation + Delta-G solvation = -32.606769 kcal Electronic energy + Delta-G solvation = -30859.683957 eV Core-core repulsion = 26887.649382 eV Total energy + Delta-G solvation = -3972.034575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08586 -39.94810 -38.55083 -36.20436 -35.45432 -34.83886 -33.81320 -31.57626 -30.68285 -28.97375 -27.88724 -26.69062 -25.43376 -23.89811 -23.25288 -22.77621 -21.68357 -21.27082 -20.63062 -19.44841 -18.47816 -18.03218 -16.98748 -16.35902 -16.08344 -16.03288 -15.86918 -15.15004 -14.99182 -14.80623 -14.38564 -14.05799 -13.71230 -13.57177 -13.43930 -13.32819 -13.06125 -12.81097 -12.72799 -12.58417 -12.39873 -11.94085 -11.88287 -11.64527 -11.40525 -11.32120 -11.06148 -11.02170 -10.90531 -10.84737 -10.74404 -10.29077 -10.21748 -10.12811 -9.94111 -9.73732 -9.66956 -9.52251 -9.43804 -8.86907 -8.52532 -6.95739 -5.75870 -3.05066 2.14224 2.45949 2.77857 2.87605 3.43437 3.49043 3.51337 3.51488 4.25184 4.32659 4.48626 4.51314 4.55047 4.59842 4.85372 4.89806 4.94702 5.20990 5.23781 5.31256 5.36112 5.41162 5.47504 5.48942 5.50172 5.52300 5.59455 5.68264 5.76600 5.77801 5.80190 5.85495 5.96524 6.04884 6.06274 6.12214 6.22812 6.32568 6.35148 6.43528 6.49215 6.59947 6.74120 6.92909 7.11473 7.12422 7.53087 7.71157 7.86084 8.10377 8.42161 9.53494 10.10140 10.44610 11.46685 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.003272 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.446706 B = 8555.628812 C = 9257.870676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.561 3.439 4 O -0.527 6.527 5 C -0.194 4.194 6 C 0.566 3.434 7 O -0.528 6.528 8 N -0.605 5.605 9 C 0.103 3.897 10 C -0.090 4.090 11 H 0.099 0.901 12 C -0.110 4.110 13 C -0.117 4.117 14 C -0.135 4.135 15 C 0.191 3.809 16 H 0.052 0.948 17 N -0.727 5.727 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.094 4.094 27 H 0.076 0.924 28 C 0.118 3.882 29 C -0.130 4.130 30 C -0.128 4.128 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.407 0.593 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.116 0.884 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 8.610 -19.487 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.345 3.655 4 O -0.403 6.403 5 C -0.200 4.200 6 C 0.352 3.648 7 O -0.405 6.405 8 N -0.337 5.337 9 C -0.020 4.020 10 C -0.110 4.110 11 H 0.117 0.883 12 C -0.147 4.147 13 C -0.155 4.155 14 C -0.176 4.176 15 C 0.081 3.919 16 H 0.070 0.930 17 N -0.368 5.368 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.114 4.114 27 H 0.094 0.906 28 C -0.004 4.004 29 C -0.167 4.167 30 C -0.165 4.165 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.134 0.866 48 H 0.125 0.875 49 H 0.132 0.868 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.014 8.788 -19.374 22.108 hybrid contribution 0.268 -0.931 0.968 1.370 sum -5.747 7.857 -18.406 20.821 Atomic orbital electron populations 1.21586 0.78982 1.02609 1.02434 1.45745 1.07989 1.08817 1.75357 1.19060 0.86902 0.83824 0.75703 1.90707 1.69353 1.31372 1.48825 1.21444 0.92613 1.10944 0.95038 1.18569 0.80560 0.83069 0.82572 1.90753 1.37875 1.25956 1.85874 1.48568 1.55371 1.23528 1.06279 1.22679 0.95952 0.84554 0.98817 1.22400 0.97712 0.96992 0.93881 0.88297 1.21489 0.95065 1.00058 0.98105 1.21526 0.99212 0.98525 0.96285 1.22303 1.00377 0.94950 0.99943 1.19630 0.92107 0.89710 0.90467 0.93047 1.42517 1.85955 1.01839 1.06463 1.19275 1.40624 0.92424 0.84592 0.91107 1.24735 1.02859 0.95409 0.97878 1.69673 1.56900 0.96756 1.34665 0.86152 0.77459 0.77277 0.85509 1.20577 1.21947 1.21921 1.21697 1.01135 0.93373 0.95181 0.90601 1.21961 1.01507 0.98101 0.78806 1.23108 1.01439 0.98761 0.93425 1.23075 1.00923 0.91826 1.00701 0.90360 0.92000 0.92009 0.75910 0.91654 0.90187 0.92509 0.92074 0.92184 0.92759 0.91808 0.92572 0.78236 0.93566 0.90399 0.90976 0.86596 0.87536 0.86849 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.71 59.84 0.64 1.33 16 2 N -0.73 -7.11 5.71 -67.08 -0.38 -7.49 16 3 C 0.56 6.66 6.42 -10.99 -0.07 6.59 16 4 O -0.53 -7.42 16.72 5.56 0.09 -7.33 16 5 C -0.19 -2.23 1.48 -156.81 -0.23 -2.46 16 6 C 0.57 8.41 7.11 -10.98 -0.08 8.33 16 7 O -0.53 -9.61 16.97 5.56 0.09 -9.51 16 8 N -0.60 -8.85 2.86 -170.02 -0.49 -9.34 16 9 C 0.10 1.29 5.38 -1.91 -0.01 1.28 16 10 C -0.09 -1.14 3.72 -88.55 -0.33 -1.47 16 11 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 12 C -0.11 -1.34 4.81 -26.93 -0.13 -1.47 16 13 C -0.12 -1.58 5.93 -26.77 -0.16 -1.74 16 14 C -0.14 -2.35 5.37 -26.66 -0.14 -2.50 16 15 C 0.19 3.61 2.44 -69.07 -0.17 3.44 16 16 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 17 N -0.73 -17.66 5.01 -54.54 -0.27 -17.94 16 18 C -0.24 -6.47 9.91 -15.06 -0.15 -6.62 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 22 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C -0.09 -1.50 2.39 -90.93 -0.22 -1.72 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 C 0.12 2.00 4.79 -3.34 -0.02 1.99 16 29 C -0.13 -1.17 9.75 -26.70 -0.26 -1.43 16 30 C -0.13 -1.19 9.33 -26.69 -0.25 -1.44 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.41 3.49 8.83 -40.82 -0.36 3.13 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.93 7.23 -51.93 -0.38 0.56 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.83 7.17 -51.93 -0.37 0.46 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.04 6.75 -51.93 -0.35 0.69 16 43 H 0.38 10.00 6.76 -40.82 -0.28 9.73 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.08 1.48 6.49 -51.93 -0.34 1.14 16 46 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 47 H 0.12 1.10 7.95 -51.93 -0.41 0.69 16 48 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.11 0.98 8.01 -51.93 -0.42 0.57 16 50 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -33.15 395.38 -9.32 -42.47 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -8.36 Total: 11.60 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.67 Total: 1.66 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.42 Total: -62.13 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.19 Total: -16.84 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.15 -9.32 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717850181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.862 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds