Wall clock time and date at job start Tue Mar 31 2020 18:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34771 * 120.00192 * 2 1 4 4 O 1.21274 * 120.00249 * 354.90620 * 3 2 1 5 5 C 1.50699 * 119.99912 * 174.91260 * 3 2 1 6 6 C 1.50707 * 115.54583 * 293.80446 * 5 3 2 7 7 O 1.21283 * 119.99492 * 117.34400 * 6 5 3 8 8 N 1.34770 * 120.00003 * 297.33425 * 6 5 3 9 9 C 1.47619 * 125.72808 * 354.37688 * 8 6 5 10 10 C 1.55842 * 104.47072 * 204.85911 * 9 8 6 11 11 H 1.08999 * 113.43392 * 201.15784 * 10 9 8 12 12 C 1.52991 * 106.36252 * 77.05552 * 10 9 8 13 13 C 1.52626 * 110.93257 * 198.11026 * 12 10 9 14 14 C 1.53303 * 108.50264 * 62.20349 * 13 12 10 15 15 C 1.52840 * 108.21671 * 296.20730 * 14 13 12 16 16 H 1.08997 * 109.06159 * 298.59716 * 15 14 13 17 17 N 1.46498 * 109.05917 * 179.59555 * 15 14 13 18 18 C 1.36940 * 119.99743 * 84.72926 * 17 15 14 19 19 H 1.08004 * 120.00023 * 0.27425 * 18 17 15 20 20 C 1.38814 * 120.00060 * 180.27168 * 18 17 15 21 21 N 1.31622 * 119.99802 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47110 * 120.00164 * 22 20 18 25 25 H 1.48495 * 109.47145 * 240.00376 * 22 20 18 26 26 C 1.50895 * 111.56273 * 59.06285 * 15 14 13 27 27 H 1.09005 * 109.03000 * 186.17750 * 26 15 14 28 28 C 1.47430 * 125.72709 * 174.36610 * 8 6 5 29 29 C 1.52995 * 117.50302 * 79.47485 * 5 3 2 30 30 C 1.52999 * 117.50263 * 148.13928 * 5 3 2 31 31 H 1.08993 * 109.47732 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46954 * 300.00333 * 1 2 3 33 33 H 1.09001 * 109.47358 * 59.99821 * 1 2 3 34 34 H 0.97002 * 119.99572 * 180.02562 * 2 1 3 35 35 H 1.09004 * 110.43524 * 86.11546 * 9 8 6 36 36 H 1.08998 * 110.43306 * 323.61123 * 9 8 6 37 37 H 1.09004 * 109.18711 * 77.73931 * 12 10 9 38 38 H 1.09000 * 109.18557 * 318.48538 * 12 10 9 39 39 H 1.08998 * 109.62835 * 302.50353 * 13 12 10 40 40 H 1.08993 * 109.63218 * 181.91159 * 13 12 10 41 41 H 1.08999 * 109.70930 * 176.52864 * 14 13 12 42 42 H 1.08996 * 109.71608 * 55.89158 * 14 13 12 43 43 H 0.96992 * 120.00308 * 265.00109 * 17 15 14 44 44 H 0.96999 * 119.99721 * 180.02562 * 21 20 18 45 45 H 1.09007 * 110.04056 * 60.07453 * 28 8 6 46 46 H 1.09005 * 110.05052 * 298.60496 * 28 8 6 47 47 H 1.09004 * 117.49939 * 215.00730 * 29 5 3 48 48 H 1.09002 * 117.50332 * 0.02562 * 29 5 3 49 49 H 1.08997 * 117.49655 * 359.96720 * 30 5 3 50 50 H 1.08999 * 117.50511 * 144.97412 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5361 2.2154 -0.0932 5 6 3.6414 1.1696 0.1157 6 6 4.1929 0.6776 1.4291 7 8 4.8909 -0.3137 1.4604 8 7 3.9105 1.3392 2.5688 9 6 3.1771 2.6167 2.6648 10 6 3.6664 3.2471 4.0034 11 1 2.9811 3.9919 4.4078 12 6 5.0566 3.8225 3.7260 13 6 5.8170 4.0624 5.0274 14 6 6.0099 2.7154 5.7336 15 6 4.6317 2.1687 6.1045 16 1 4.1452 2.8641 6.7884 17 7 4.7941 0.8752 6.7728 18 6 5.0419 0.8263 8.1187 19 1 5.1133 1.7412 8.6882 20 6 5.2015 -0.3991 8.7510 21 7 5.1150 -1.5140 8.0568 22 14 5.5403 -0.4658 10.5868 23 1 5.5903 0.9149 11.1314 24 1 4.4577 -1.2251 11.2627 25 1 6.8415 -1.1401 10.8258 26 6 3.7605 1.9877 4.8858 27 1 2.7577 1.7032 5.2047 28 6 4.2819 0.9085 3.9289 29 6 4.4478 0.8640 -1.1480 30 6 4.4029 2.2905 -0.5946 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.9499 -0.8401 -0.0004 35 1 2.1025 2.4371 2.6992 36 1 3.4289 3.2641 1.8248 37 1 4.9533 4.7672 3.1922 38 1 5.6174 3.1219 3.1074 39 1 5.2442 4.7329 5.6680 40 1 6.7893 4.5031 4.8075 41 1 6.6050 2.8553 6.6360 42 1 6.5141 2.0183 5.0644 43 1 4.7300 0.0536 6.2613 44 1 5.2261 -2.3703 8.4987 45 1 5.3658 0.8273 4.0121 46 1 3.8163 -0.0502 4.1576 47 1 5.3773 0.3070 -1.0295 48 1 3.8917 0.6615 -2.0633 49 1 3.8171 3.0258 -1.1462 50 1 5.3025 2.6723 -0.1120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717850181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:13 Heat of formation + Delta-G solvation = -55.330493 kcal Electronic energy + Delta-G solvation = -30860.669331 eV Core-core repulsion = 26887.649382 eV Total energy + Delta-G solvation = -3973.019950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18026 -41.03381 -39.71126 -37.15476 -36.91312 -35.68241 -35.39340 -33.34467 -31.92238 -30.61120 -28.70138 -28.03880 -26.56714 -25.60826 -24.50160 -23.50062 -22.88911 -22.40012 -21.85011 -20.43499 -19.85990 -19.38351 -18.64165 -17.41445 -17.21152 -17.05883 -16.94881 -16.68525 -16.07517 -15.91900 -15.58425 -15.36534 -15.24735 -14.95483 -14.73296 -14.46979 -14.22392 -14.07465 -13.84330 -13.58993 -13.40744 -13.17775 -13.07080 -12.85759 -12.75434 -12.64061 -12.53779 -12.33187 -12.20918 -12.19116 -12.01385 -11.90440 -11.70949 -11.33019 -11.24171 -11.20726 -11.03701 -10.85454 -10.75309 -10.24099 -9.79328 -8.99576 -7.93280 -5.21789 1.13980 1.41065 1.46568 1.47156 1.57072 1.74065 2.03631 2.55907 2.66230 3.22544 3.39621 3.40097 3.53136 3.57726 3.67893 3.73373 3.75971 4.09581 4.15021 4.25576 4.30568 4.34550 4.37650 4.47645 4.53683 4.55766 4.57750 4.61349 4.64927 4.73286 4.74477 4.82239 4.85088 4.88422 4.91773 5.05285 5.08418 5.09833 5.17338 5.25528 5.29144 5.35219 5.40032 5.53426 5.54978 5.67866 6.28731 6.30912 6.36793 6.91052 7.01300 7.34399 8.10587 8.32736 9.30639 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.003272 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.446706 B = 8555.628812 C = 9257.870676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.561 3.439 4 O -0.550 6.550 5 C -0.208 4.208 6 C 0.564 3.436 7 O -0.571 6.571 8 N -0.603 5.603 9 C 0.108 3.892 10 C -0.078 4.078 11 H 0.128 0.872 12 C -0.106 4.106 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.188 3.812 16 H 0.054 0.946 17 N -0.741 5.741 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.078 4.078 21 N -0.973 5.973 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.297 1.297 26 C -0.087 4.087 27 H 0.067 0.933 28 C 0.128 3.872 29 C -0.117 4.117 30 C -0.114 4.114 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.109 0.891 48 H 0.129 0.871 49 H 0.127 0.873 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 11.422 -20.833 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.375 5.375 3 C 0.345 3.655 4 O -0.428 6.428 5 C -0.214 4.214 6 C 0.353 3.647 7 O -0.450 6.450 8 N -0.335 5.335 9 C -0.014 4.014 10 C -0.097 4.097 11 H 0.146 0.854 12 C -0.143 4.143 13 C -0.146 4.146 14 C -0.169 4.169 15 C 0.080 3.920 16 H 0.072 0.928 17 N -0.381 5.381 18 C -0.364 4.364 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.624 5.624 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.225 1.225 26 C -0.107 4.107 27 H 0.086 0.914 28 C 0.005 3.995 29 C -0.154 4.154 30 C -0.151 4.151 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.202 0.798 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.127 0.873 48 H 0.147 0.853 49 H 0.145 0.855 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.797 11.664 -20.736 24.743 hybrid contribution 0.505 -1.813 1.346 2.314 sum -6.292 9.850 -19.390 22.641 Atomic orbital electron populations 1.21736 0.77787 1.04331 1.02024 1.45839 1.08899 1.08581 1.74197 1.19080 0.86874 0.83968 0.75544 1.90689 1.69702 1.32117 1.50257 1.21317 0.92748 1.13559 0.93787 1.19174 0.79705 0.82305 0.83565 1.90727 1.39838 1.27779 1.86658 1.48622 1.55282 1.24341 1.05259 1.22771 0.95607 0.83541 0.99448 1.22478 0.98908 0.95713 0.92645 0.85399 1.21478 0.94033 1.01345 0.97432 1.21469 1.00674 0.95838 0.96608 1.22134 0.98458 0.97186 0.99097 1.19861 0.93504 0.87305 0.91323 0.92841 1.42771 1.85939 1.03447 1.05902 1.19678 1.38324 0.92512 0.85922 0.90358 1.25534 1.04109 0.95251 1.02116 1.69843 1.59234 0.97068 1.36268 0.85116 0.76564 0.77775 0.80600 1.18750 1.22259 1.22491 1.21536 0.99589 0.95264 0.94324 0.91404 1.21613 0.99518 0.97399 0.80978 1.23226 1.00742 0.98552 0.92888 1.23206 1.00487 0.91855 0.99567 0.87690 0.93095 0.91645 0.75348 0.91662 0.88244 0.88903 0.93628 0.90612 0.91212 0.93908 0.94568 0.79821 0.94260 0.93005 0.94106 0.87269 0.85266 0.85529 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.71 127.77 1.37 2.57 16 2 N -0.72 -13.28 5.71 -484.55 -2.77 -16.04 16 3 C 0.56 12.45 6.42 87.66 0.56 13.01 16 4 O -0.55 -14.40 16.72 -3.01 -0.05 -14.45 16 5 C -0.21 -4.48 1.48 -53.67 -0.08 -4.56 16 6 C 0.56 16.83 7.11 87.66 0.62 17.45 16 7 O -0.57 -21.56 16.97 -3.04 -0.05 -21.61 16 8 N -0.60 -17.68 2.86 -810.22 -2.32 -20.00 16 9 C 0.11 2.49 5.38 87.15 0.47 2.96 16 10 C -0.08 -1.76 3.72 -9.46 -0.04 -1.80 16 11 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 12 C -0.11 -2.24 4.81 30.47 0.15 -2.10 16 13 C -0.11 -2.61 5.93 30.57 0.18 -2.43 16 14 C -0.13 -4.47 5.37 30.64 0.16 -4.31 16 15 C 0.19 7.16 2.44 44.25 0.11 7.27 16 16 H 0.05 2.03 8.06 -2.39 -0.02 2.01 16 17 N -0.74 -37.34 5.01 -326.46 -1.64 -38.98 16 18 C -0.23 -12.87 9.91 84.03 0.83 -12.04 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 21 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 22 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 C -0.09 -2.79 2.39 -11.00 -0.03 -2.81 16 27 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 28 C 0.13 4.57 4.79 86.32 0.41 4.99 16 29 C -0.12 -1.88 9.75 30.62 0.30 -1.59 16 30 C -0.11 -1.82 9.33 30.62 0.29 -1.54 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.41 6.72 8.83 -92.71 -0.82 5.90 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.98 7.23 -2.39 -0.02 1.96 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.14 7.17 -2.39 -0.02 1.12 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.39 6.75 -2.39 -0.02 1.37 16 43 H 0.37 20.46 6.76 -92.71 -0.63 19.84 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.05 2.12 6.49 -2.38 -0.02 2.10 16 46 H 0.04 1.68 8.04 -2.38 -0.02 1.67 16 47 H 0.11 1.96 7.95 -2.38 -0.02 1.94 16 48 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.13 1.76 8.01 -2.39 -0.02 1.74 16 50 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.04 395.38 0.77 -74.27 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.49 Total: 37.76 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.78 Total: 11.01 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -6.44 Total: -135.71 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.10 Total: -36.07 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.04 0.77 -74.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717850181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.940 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds