Wall clock time and date at job start Tue Mar 31 2020 18:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 119.99810 * 2 1 4 4 H 1.08005 * 120.00530 * 202.33582 * 3 2 1 5 5 C 1.38815 * 120.00087 * 22.33184 * 3 2 1 6 6 N 1.31618 * 119.99947 * 11.36445 * 5 3 2 7 7 Si 1.86804 * 120.00105 * 191.36571 * 5 3 2 8 8 H 1.48499 * 109.46947 * 60.00356 * 7 5 3 9 9 H 1.48503 * 109.47073 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47042 * 300.00102 * 7 5 3 11 11 C 1.46494 * 120.00306 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47471 * 269.99725 * 11 2 1 13 13 H 1.09002 * 109.46675 * 59.99686 * 12 11 2 14 14 O 1.42898 * 109.47020 * 300.00495 * 12 11 2 15 15 C 1.53000 * 109.47542 * 180.02562 * 12 11 2 16 16 N 1.46498 * 109.47119 * 185.00499 * 15 12 11 17 17 C 1.46505 * 119.99725 * 269.99635 * 16 15 12 18 18 C 1.34778 * 120.00536 * 89.99675 * 16 15 12 19 19 O 1.21284 * 119.99337 * 0.02562 * 18 16 15 20 20 C 1.50692 * 119.99974 * 179.97438 * 18 16 15 21 21 C 1.53001 * 109.46988 * 180.02562 * 20 18 16 22 22 C 1.52998 * 109.47548 * 179.97438 * 21 20 18 23 23 C 1.50696 * 109.47364 * 179.97438 * 22 21 20 24 24 C 1.38230 * 119.61659 * 125.02550 * 23 22 21 25 25 C 1.38623 * 119.16062 * 179.70303 * 24 23 22 26 26 C 1.38675 * 118.41838 * 0.51360 * 25 24 23 27 27 C 1.38179 * 119.16491 * 359.50489 * 26 25 24 28 28 N 1.31850 * 119.62093 * 304.99922 * 23 22 21 29 29 H 1.09000 * 109.46778 * 274.20766 * 1 2 3 30 30 H 1.08997 * 109.47432 * 34.21451 * 1 2 3 31 31 H 1.09001 * 109.46971 * 154.21481 * 1 2 3 32 32 H 0.96999 * 120.00441 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47428 * 149.99872 * 11 2 1 34 34 H 1.09001 * 109.47130 * 30.00264 * 11 2 1 35 35 H 0.96705 * 113.99793 * 299.98955 * 14 12 11 36 36 H 1.08992 * 109.47182 * 64.99926 * 15 12 11 37 37 H 1.09001 * 109.46575 * 304.99837 * 15 12 11 38 38 H 1.09000 * 109.46762 * 270.00373 * 17 16 15 39 39 H 1.09003 * 109.46833 * 30.00165 * 17 16 15 40 40 H 1.09001 * 109.47186 * 150.00006 * 17 16 15 41 41 H 1.08994 * 109.47327 * 60.00209 * 20 18 16 42 42 H 1.09007 * 109.47256 * 299.99735 * 20 18 16 43 43 H 1.09005 * 109.47418 * 59.99637 * 21 20 18 44 44 H 1.08997 * 109.47012 * 299.99838 * 21 20 18 45 45 H 1.09005 * 109.46867 * 59.99533 * 22 21 20 46 46 H 1.09002 * 109.46746 * 300.00482 * 22 21 20 47 47 H 1.08001 * 120.41831 * 359.95065 * 24 23 22 48 48 H 1.08004 * 120.79021 * 180.27052 * 25 24 23 49 49 H 1.08004 * 120.41696 * 179.77899 * 26 25 24 50 50 H 1.07997 * 119.61915 * 180.25271 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2211 -0.3554 5 6 1.5336 2.3430 0.4568 6 7 0.3840 2.2691 1.0934 7 14 2.3362 4.0049 0.1679 8 1 2.4908 4.2329 -1.2913 9 1 1.4838 5.0738 0.7478 10 1 3.6716 4.0292 0.8170 11 6 2.1975 -1.2686 -0.0006 12 6 2.4527 -1.7110 1.4417 13 1 1.5002 -1.8415 1.9555 14 8 3.2248 -0.7153 2.1157 15 6 3.2183 -3.0356 1.4411 16 7 3.3582 -3.5194 2.8168 17 6 4.5225 -3.1289 3.6157 18 6 2.4159 -4.3237 3.3476 19 8 1.4523 -4.6473 2.6860 20 6 2.5602 -4.8217 4.7625 21 6 1.3650 -5.7095 5.1151 22 6 1.5118 -6.2157 6.5514 23 6 0.3343 -7.0896 6.8988 24 6 0.5499 -8.3751 7.3590 25 6 -0.5400 -9.1687 7.6817 26 6 -1.8120 -8.6410 7.5185 27 6 -1.9497 -7.3473 7.0529 28 7 -0.8897 -6.6191 6.7609 29 1 -0.3633 0.0754 1.0249 30 1 -0.3634 0.8498 -0.5778 31 1 -0.3633 -0.9254 -0.4470 32 1 -0.0467 3.0777 1.4123 33 1 3.1500 -1.1381 -0.5144 34 1 1.6085 -2.0281 -0.5148 35 1 4.0874 -0.5466 1.7123 36 1 4.2064 -2.8839 1.0070 37 1 2.6712 -3.7711 0.8513 38 1 5.3219 -3.8558 3.4722 39 1 4.8660 -2.1438 3.2998 40 1 4.2457 -3.0964 4.6695 41 1 2.5961 -3.9724 5.4447 42 1 3.4803 -5.3992 4.8524 43 1 1.3295 -6.5588 4.4327 44 1 0.4447 -5.1324 5.0251 45 1 1.5476 -5.3666 7.2340 46 1 2.4321 -6.7928 6.6409 47 1 1.5548 -8.7550 7.4695 48 1 -0.4018 -10.1754 8.0476 49 1 -2.6839 -9.2322 7.7566 50 1 -2.9368 -6.9276 6.9270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717943868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:52 Heat of formation + Delta-G solvation = -30.146496 kcal Electronic energy + Delta-G solvation = -28607.584722 eV Core-core repulsion = 24635.656832 eV Total energy + Delta-G solvation = -3971.927890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.48044 -39.80617 -37.29874 -35.33501 -35.05105 -34.31351 -32.66510 -31.78476 -31.24976 -29.68048 -27.74936 -26.73476 -25.79387 -25.21163 -23.86735 -23.15681 -21.92315 -21.13095 -20.34958 -18.98859 -17.24246 -16.86945 -16.77477 -16.50673 -16.06582 -16.04529 -15.64224 -15.17416 -14.78068 -14.66257 -14.38703 -14.17509 -13.77316 -13.56912 -13.42797 -13.22316 -13.15124 -12.88208 -12.58391 -12.38518 -12.33084 -12.08573 -11.82349 -11.72335 -11.48464 -11.25173 -11.05330 -10.83609 -10.77620 -10.58148 -10.39309 -10.18743 -10.14822 -9.95048 -9.79991 -9.73271 -9.61411 -9.41726 -9.21998 -8.43633 -8.25632 -6.60494 -5.57927 -3.02279 0.82874 1.00606 2.81129 3.15625 3.45764 3.50262 3.51520 3.53501 4.03615 4.33916 4.56023 4.58704 4.60420 4.75929 4.83290 4.93165 4.95628 5.09472 5.12998 5.24083 5.27973 5.30363 5.38785 5.45409 5.49850 5.51076 5.53177 5.61316 5.62908 5.80170 5.81320 5.87795 5.90459 6.05646 6.09966 6.11826 6.17930 6.31746 6.44543 6.54622 6.69442 6.87754 6.95376 7.48800 7.53920 7.77846 7.83683 7.91712 8.36325 8.47848 8.55884 9.35883 9.98941 10.48464 11.47954 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.002079 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.797089 B =13465.914769 C =14187.248463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.592 5.592 3 C -0.240 4.240 4 H 0.064 0.936 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.285 1.285 11 C 0.124 3.876 12 C 0.073 3.927 13 H 0.089 0.911 14 O -0.535 6.535 15 C 0.081 3.919 16 N -0.608 5.608 17 C 0.081 3.919 18 C 0.509 3.491 19 O -0.540 6.540 20 C -0.138 4.138 21 C -0.095 4.095 22 C -0.071 4.071 23 C 0.135 3.865 24 C -0.174 4.174 25 C -0.075 4.075 26 C -0.183 4.183 27 C 0.105 3.895 28 N -0.477 5.477 29 H 0.028 0.972 30 H 0.045 0.955 31 H -0.005 1.005 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.356 0.644 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 -23.143 13.138 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.313 5.313 3 C -0.370 4.370 4 H 0.082 0.918 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.211 1.211 11 C -0.005 4.005 12 C 0.009 3.991 13 H 0.107 0.893 14 O -0.337 6.337 15 C -0.042 4.042 16 N -0.341 5.341 17 C -0.062 4.062 18 C 0.297 3.703 19 O -0.417 6.417 20 C -0.178 4.178 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.002 4.002 24 C -0.194 4.194 25 C -0.101 4.101 26 C -0.203 4.203 27 C -0.053 4.053 28 N -0.186 5.186 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.278 -22.285 12.916 26.110 hybrid contribution 0.997 0.029 0.068 1.000 sum 5.275 -22.256 12.983 26.301 Atomic orbital electron populations 1.20803 0.82467 0.95461 0.99329 1.43849 1.01817 1.00350 1.85325 1.18997 0.97658 0.85121 1.35221 0.91785 1.24999 0.97792 0.98340 0.98541 1.70060 1.17883 1.26820 1.40526 0.86356 0.78474 0.84183 0.77556 1.21374 1.21826 1.21102 1.21453 0.96412 0.89425 0.93209 1.23177 0.94102 0.84454 0.97323 0.89283 1.86697 1.32047 1.59913 1.55040 1.22409 1.01230 0.98337 0.82237 1.47800 1.23070 1.48641 1.14572 1.21791 0.87459 1.01022 0.95915 1.20656 0.82205 0.78255 0.89137 1.90707 1.30390 1.58074 1.62570 1.21696 1.00651 1.01111 0.94312 1.21241 0.98526 0.99552 0.94030 1.20605 0.93582 0.98609 0.98081 1.21307 0.92995 0.92375 0.93572 1.22000 1.00175 0.95202 1.01986 1.21578 0.92578 0.99790 0.96175 1.22147 0.98264 0.97523 1.02373 1.22820 0.97727 0.90951 0.93760 1.67518 0.98739 1.37610 1.14741 0.95410 0.93625 0.98615 0.93931 0.93716 0.93713 0.79942 0.90871 0.89632 0.93270 0.90220 0.91293 0.88766 0.89288 0.91507 0.89810 0.89713 0.90313 0.84870 0.84977 0.84908 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.33 9.01 59.85 0.54 4.87 16 2 N -0.59 -15.36 2.87 -181.12 -0.52 -15.88 16 3 C -0.24 -6.67 9.02 -15.06 -0.14 -6.81 16 4 H 0.06 1.71 7.84 -52.48 -0.41 1.30 16 5 C 0.00 0.03 5.13 -17.43 -0.09 -0.06 16 6 N -0.91 -27.65 10.59 55.49 0.59 -27.06 16 7 Si 0.90 22.45 29.57 -169.99 -5.03 17.42 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 C 0.12 2.57 5.43 -4.05 -0.02 2.54 16 12 C 0.07 1.41 3.48 -26.73 -0.09 1.32 16 13 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 14 O -0.53 -10.84 11.43 -35.23 -0.40 -11.24 16 15 C 0.08 1.22 5.06 -4.04 -0.02 1.20 16 16 N -0.61 -8.39 2.84 -181.57 -0.52 -8.91 16 17 C 0.08 0.82 10.06 59.85 0.60 1.42 16 18 C 0.51 7.64 7.67 -10.99 -0.08 7.56 16 19 O -0.54 -10.36 15.56 5.55 0.09 -10.27 16 20 C -0.14 -1.45 4.25 -27.89 -0.12 -1.56 16 21 C -0.10 -1.08 4.36 -26.73 -0.12 -1.20 16 22 C -0.07 -0.62 5.61 -27.89 -0.16 -0.77 16 23 C 0.14 1.38 6.18 -82.59 -0.51 0.87 16 24 C -0.17 -1.39 9.71 -39.44 -0.38 -1.77 16 25 C -0.08 -0.54 10.18 -39.28 -0.40 -0.94 16 26 C -0.18 -1.37 10.11 -39.44 -0.40 -1.77 16 27 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 28 N -0.48 -5.72 9.88 -9.48 -0.09 -5.81 16 29 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 30 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 31 H 0.00 -0.11 7.84 -51.93 -0.41 -0.52 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 35 H 0.36 5.96 9.04 45.56 0.41 6.37 16 36 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.84 7.11 -51.93 -0.37 0.47 16 40 H 0.07 0.60 6.44 -51.93 -0.33 0.27 16 41 H 0.09 0.90 7.40 -51.93 -0.38 0.51 16 42 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 43 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 47 H 0.13 0.73 7.95 -52.49 -0.42 0.32 16 48 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 49 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 50 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 409.03 15.07 6.16 6.16 Total: -1.00 -37.03 409.03 -8.94 -45.97 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.63 Total: 3.93 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.58 Total: 5.69 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.54 Total: -57.66 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.32 Total: -21.51 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.03 -8.94 -45.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717943868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.820 kcal (2) G-P(sol) polarization free energy of solvation -37.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds