Wall clock time and date at job start Tue Mar 31 2020 18:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 119.99810 * 2 1 4 4 H 1.08005 * 120.00530 * 202.33582 * 3 2 1 5 5 C 1.38815 * 120.00087 * 22.33184 * 3 2 1 6 6 N 1.31618 * 119.99947 * 11.36445 * 5 3 2 7 7 Si 1.86804 * 120.00105 * 191.36571 * 5 3 2 8 8 H 1.48499 * 109.46947 * 60.00356 * 7 5 3 9 9 H 1.48503 * 109.47073 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47042 * 300.00102 * 7 5 3 11 11 C 1.46494 * 120.00306 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47471 * 269.99725 * 11 2 1 13 13 H 1.09002 * 109.46675 * 59.99686 * 12 11 2 14 14 O 1.42898 * 109.47020 * 300.00495 * 12 11 2 15 15 C 1.53000 * 109.47542 * 180.02562 * 12 11 2 16 16 N 1.46498 * 109.47119 * 185.00499 * 15 12 11 17 17 C 1.46505 * 119.99725 * 269.99635 * 16 15 12 18 18 C 1.34778 * 120.00536 * 89.99675 * 16 15 12 19 19 O 1.21284 * 119.99337 * 0.02562 * 18 16 15 20 20 C 1.50692 * 119.99974 * 179.97438 * 18 16 15 21 21 C 1.53001 * 109.46988 * 180.02562 * 20 18 16 22 22 C 1.52998 * 109.47548 * 179.97438 * 21 20 18 23 23 C 1.50696 * 109.47364 * 179.97438 * 22 21 20 24 24 C 1.38230 * 119.61659 * 125.02550 * 23 22 21 25 25 C 1.38623 * 119.16062 * 179.70303 * 24 23 22 26 26 C 1.38675 * 118.41838 * 0.51360 * 25 24 23 27 27 C 1.38179 * 119.16491 * 359.50489 * 26 25 24 28 28 N 1.31850 * 119.62093 * 304.99922 * 23 22 21 29 29 H 1.09000 * 109.46778 * 274.20766 * 1 2 3 30 30 H 1.08997 * 109.47432 * 34.21451 * 1 2 3 31 31 H 1.09001 * 109.46971 * 154.21481 * 1 2 3 32 32 H 0.96999 * 120.00441 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47428 * 149.99872 * 11 2 1 34 34 H 1.09001 * 109.47130 * 30.00264 * 11 2 1 35 35 H 0.96705 * 113.99793 * 299.98955 * 14 12 11 36 36 H 1.08992 * 109.47182 * 64.99926 * 15 12 11 37 37 H 1.09001 * 109.46575 * 304.99837 * 15 12 11 38 38 H 1.09000 * 109.46762 * 270.00373 * 17 16 15 39 39 H 1.09003 * 109.46833 * 30.00165 * 17 16 15 40 40 H 1.09001 * 109.47186 * 150.00006 * 17 16 15 41 41 H 1.08994 * 109.47327 * 60.00209 * 20 18 16 42 42 H 1.09007 * 109.47256 * 299.99735 * 20 18 16 43 43 H 1.09005 * 109.47418 * 59.99637 * 21 20 18 44 44 H 1.08997 * 109.47012 * 299.99838 * 21 20 18 45 45 H 1.09005 * 109.46867 * 59.99533 * 22 21 20 46 46 H 1.09002 * 109.46746 * 300.00482 * 22 21 20 47 47 H 1.08001 * 120.41831 * 359.95065 * 24 23 22 48 48 H 1.08004 * 120.79021 * 180.27052 * 25 24 23 49 49 H 1.08004 * 120.41696 * 179.77899 * 26 25 24 50 50 H 1.07997 * 119.61915 * 180.25271 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2211 -0.3554 5 6 1.5336 2.3430 0.4568 6 7 0.3840 2.2691 1.0934 7 14 2.3362 4.0049 0.1679 8 1 2.4908 4.2329 -1.2913 9 1 1.4838 5.0738 0.7478 10 1 3.6716 4.0292 0.8170 11 6 2.1975 -1.2686 -0.0006 12 6 2.4527 -1.7110 1.4417 13 1 1.5002 -1.8415 1.9555 14 8 3.2248 -0.7153 2.1157 15 6 3.2183 -3.0356 1.4411 16 7 3.3582 -3.5194 2.8168 17 6 4.5225 -3.1289 3.6157 18 6 2.4159 -4.3237 3.3476 19 8 1.4523 -4.6473 2.6860 20 6 2.5602 -4.8217 4.7625 21 6 1.3650 -5.7095 5.1151 22 6 1.5118 -6.2157 6.5514 23 6 0.3343 -7.0896 6.8988 24 6 0.5499 -8.3751 7.3590 25 6 -0.5400 -9.1687 7.6817 26 6 -1.8120 -8.6410 7.5185 27 6 -1.9497 -7.3473 7.0529 28 7 -0.8897 -6.6191 6.7609 29 1 -0.3633 0.0754 1.0249 30 1 -0.3634 0.8498 -0.5778 31 1 -0.3633 -0.9254 -0.4470 32 1 -0.0467 3.0777 1.4123 33 1 3.1500 -1.1381 -0.5144 34 1 1.6085 -2.0281 -0.5148 35 1 4.0874 -0.5466 1.7123 36 1 4.2064 -2.8839 1.0070 37 1 2.6712 -3.7711 0.8513 38 1 5.3219 -3.8558 3.4722 39 1 4.8660 -2.1438 3.2998 40 1 4.2457 -3.0964 4.6695 41 1 2.5961 -3.9724 5.4447 42 1 3.4803 -5.3992 4.8524 43 1 1.3295 -6.5588 4.4327 44 1 0.4447 -5.1324 5.0251 45 1 1.5476 -5.3666 7.2340 46 1 2.4321 -6.7928 6.6409 47 1 1.5548 -8.7550 7.4695 48 1 -0.4018 -10.1754 8.0476 49 1 -2.6839 -9.2322 7.7566 50 1 -2.9368 -6.9276 6.9270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717943868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:51 Heat of formation + Delta-G solvation = -56.389734 kcal Electronic energy + Delta-G solvation = -28608.722714 eV Core-core repulsion = 24635.656832 eV Total energy + Delta-G solvation = -3973.065882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.19111 -40.90072 -38.87989 -36.85934 -35.96352 -35.86426 -33.33079 -33.27136 -32.52009 -31.13576 -28.71596 -28.04037 -27.73351 -26.51126 -24.61030 -24.20378 -23.29027 -22.16502 -21.92958 -20.09514 -18.78724 -18.13348 -17.72629 -17.46189 -17.29529 -17.01561 -16.62442 -16.42560 -16.30356 -16.01208 -15.78171 -15.33318 -15.08794 -14.90801 -14.61390 -14.39559 -14.06823 -13.98551 -13.84901 -13.61119 -13.25584 -13.12111 -13.02697 -12.85753 -12.75351 -12.58298 -12.53693 -12.50969 -12.21211 -12.12587 -12.03674 -11.88756 -11.82751 -11.69395 -11.16039 -10.79434 -10.76625 -10.55455 -10.27861 -9.85510 -9.52109 -8.69521 -7.74918 -5.21658 0.20593 0.41067 1.47846 1.51343 1.57164 1.67387 2.12340 2.56111 2.88291 3.39998 3.42547 3.56709 3.60925 3.75977 3.83679 4.03138 4.06365 4.10737 4.19098 4.22212 4.28360 4.29072 4.36907 4.49555 4.56854 4.57880 4.64598 4.70248 4.72023 4.75245 4.80234 4.85442 4.86686 4.91927 4.97028 5.07736 5.15458 5.24579 5.29698 5.30300 5.33237 5.41570 5.59314 5.64379 5.70240 5.85403 6.36919 6.47065 7.09720 7.13232 7.20479 7.24510 7.90362 8.36782 9.30706 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.002079 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.797089 B =13465.914769 C =14187.248463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.236 4.236 4 H 0.080 0.920 5 C -0.065 4.065 6 N -0.948 5.948 7 Si 0.972 3.028 8 H -0.278 1.278 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.120 3.880 12 C 0.089 3.911 13 H 0.037 0.963 14 O -0.555 6.555 15 C 0.093 3.907 16 N -0.609 5.609 17 C 0.074 3.926 18 C 0.495 3.505 19 O -0.595 6.595 20 C -0.127 4.127 21 C -0.087 4.087 22 C -0.063 4.063 23 C 0.106 3.894 24 C -0.173 4.173 25 C -0.078 4.078 26 C -0.181 4.181 27 C 0.077 3.923 28 N -0.523 5.523 29 H -0.009 1.009 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.242 0.758 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.373 0.627 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.050 0.950 44 H 0.039 0.961 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.163 0.837 48 H 0.165 0.835 49 H 0.159 0.841 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -25.092 13.929 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.332 5.332 3 C -0.367 4.367 4 H 0.097 0.903 5 C -0.258 4.258 6 N -0.596 5.596 7 Si 0.801 3.199 8 H -0.204 1.204 9 H -0.230 1.230 10 H -0.197 1.197 11 C -0.007 4.007 12 C 0.026 3.974 13 H 0.055 0.945 14 O -0.360 6.360 15 C -0.031 4.031 16 N -0.341 5.341 17 C -0.067 4.067 18 C 0.286 3.714 19 O -0.477 6.477 20 C -0.166 4.166 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.031 4.031 24 C -0.192 4.192 25 C -0.104 4.104 26 C -0.200 4.200 27 C -0.080 4.080 28 N -0.233 5.233 29 H 0.009 0.991 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.221 0.779 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.133 0.867 47 H 0.180 0.820 48 H 0.183 0.817 49 H 0.177 0.823 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.980 -24.258 13.710 28.984 hybrid contribution -0.130 0.537 -0.197 0.587 sum 7.850 -23.721 13.513 28.406 Atomic orbital electron populations 1.20491 0.83563 0.95661 0.96923 1.44090 1.01655 1.01934 1.85518 1.19424 0.97984 0.85758 1.33494 0.90253 1.25853 0.98624 1.02138 0.99183 1.70283 1.19749 1.26997 1.42558 0.85265 0.77627 0.79401 0.77638 1.20439 1.23024 1.19732 1.21668 0.97151 0.87485 0.94433 1.22729 0.92837 0.86767 0.95087 0.94502 1.86652 1.33233 1.60469 1.55643 1.22134 1.02226 0.95171 0.83553 1.47947 1.23902 1.47835 1.14395 1.22077 0.86714 1.01789 0.96136 1.21547 0.81413 0.77901 0.90574 1.90681 1.32577 1.60192 1.64205 1.21726 1.01865 1.01755 0.91244 1.21081 0.97111 0.98483 0.95863 1.20612 0.94722 0.99038 0.95693 1.21655 0.92772 0.93870 0.94802 1.22341 1.01967 0.94201 1.00741 1.22040 0.92032 1.01071 0.95246 1.22458 0.99790 0.96713 1.01048 1.23108 0.97703 0.92258 0.94884 1.67454 1.00114 1.39416 1.16292 0.99054 0.95934 0.95959 0.94905 0.90999 0.92747 0.77938 0.87026 0.90719 0.89901 0.90566 0.89834 0.87434 0.85073 0.93131 0.94254 0.89587 0.86744 0.81987 0.81738 0.82304 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.80 9.01 127.77 1.15 10.95 16 2 N -0.61 -31.85 2.87 -726.95 -2.09 -33.93 16 3 C -0.24 -13.03 9.02 84.03 0.76 -12.27 16 4 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 5 C -0.06 -3.75 5.13 84.86 0.44 -3.31 16 6 N -0.95 -59.82 10.59 21.65 0.23 -59.59 16 7 Si 0.97 46.45 29.57 68.60 2.03 48.48 16 8 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 9 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 C 0.12 4.86 5.43 86.38 0.47 5.32 16 12 C 0.09 3.43 3.48 30.59 0.11 3.54 16 13 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 14 O -0.55 -22.03 11.43 -148.98 -1.70 -23.73 16 15 C 0.09 2.66 5.06 86.38 0.44 3.10 16 16 N -0.61 -15.83 2.84 -846.76 -2.40 -18.23 16 17 C 0.07 1.23 10.06 127.77 1.29 2.52 16 18 C 0.50 14.79 7.67 87.65 0.67 15.46 16 19 O -0.60 -23.98 15.56 -3.04 -0.05 -24.03 16 20 C -0.13 -2.47 4.25 29.85 0.13 -2.34 16 21 C -0.09 -2.02 4.36 30.59 0.13 -1.89 16 22 C -0.06 -1.03 5.61 29.85 0.17 -0.86 16 23 C 0.11 2.15 6.18 42.55 0.26 2.41 16 24 C -0.17 -2.43 9.71 22.36 0.22 -2.21 16 25 C -0.08 -0.94 10.18 22.47 0.23 -0.71 16 26 C -0.18 -2.53 10.11 22.36 0.23 -2.30 16 27 C 0.08 1.55 11.18 84.67 0.95 2.49 16 28 N -0.52 -13.29 9.88 -183.90 -1.82 -15.11 16 29 H -0.01 -0.55 7.42 -2.39 -0.02 -0.56 16 30 H 0.02 1.29 7.19 -2.39 -0.02 1.27 16 31 H 0.02 1.06 7.84 -2.39 -0.02 1.04 16 32 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 34 H 0.05 2.09 7.86 -2.39 -0.02 2.07 16 35 H 0.37 11.62 9.04 -74.05 -0.67 10.95 16 36 H 0.11 2.34 8.07 -2.39 -0.02 2.32 16 37 H 0.07 2.33 7.42 -2.39 -0.02 2.31 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.35 7.11 -2.39 -0.02 1.33 16 40 H 0.08 1.15 6.44 -2.39 -0.02 1.14 16 41 H 0.11 1.85 7.40 -2.39 -0.02 1.83 16 42 H 0.13 1.47 8.11 -2.38 -0.02 1.45 16 43 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16 44 H 0.04 1.25 7.90 -2.39 -0.02 1.23 16 45 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.11 1.00 7.87 -2.39 -0.02 0.98 16 47 H 0.16 1.20 7.95 -2.91 -0.02 1.18 16 48 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 49 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 50 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -86.88 409.03 2.07 -84.81 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.25 Total: 21.42 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 7.62 Total: 19.91 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -6.08 Total: -126.86 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.75 Total: -47.76 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -86.88 2.07 -84.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717943868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.418 kcal (2) G-P(sol) polarization free energy of solvation -86.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds