Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99779 * 2 1 4 4 C 1.39708 * 120.00262 * 179.97438 * 2 1 3 5 5 C 1.39021 * 120.00642 * 179.97438 * 4 2 1 6 6 C 1.38197 * 120.22175 * 179.97438 * 5 4 2 7 7 C 1.38023 * 120.23178 * 0.04642 * 6 5 4 8 8 C 1.39585 * 120.00180 * 359.97438 * 7 6 5 9 9 C 1.47856 * 120.10820 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99757 * 149.08096 * 9 8 7 11 11 N 1.34771 * 120.00353 * 329.08219 * 9 8 7 12 12 C 1.46507 * 119.99979 * 3.80749 * 11 9 8 13 13 C 1.46496 * 120.00376 * 183.81017 * 11 9 8 14 14 C 1.53004 * 109.47071 * 89.99632 * 13 11 9 15 15 H 1.08999 * 109.47384 * 304.99886 * 14 13 11 16 16 O 1.42893 * 109.47184 * 65.00399 * 14 13 11 17 17 C 1.53003 * 109.47001 * 185.00170 * 14 13 11 18 18 N 1.46504 * 109.46977 * 179.97438 * 17 14 13 19 19 C 1.46489 * 120.00148 * 269.99961 * 18 17 14 20 20 C 1.36940 * 119.99709 * 90.00513 * 18 17 14 21 21 H 1.07994 * 120.00193 * 21.18655 * 20 18 17 22 22 C 1.38808 * 119.99628 * 201.19231 * 20 18 17 23 23 N 1.31622 * 120.00098 * 14.94289 * 22 20 18 24 24 Si 1.86806 * 119.99954 * 194.94121 * 22 20 18 25 25 H 1.48496 * 109.46818 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46801 * 119.99773 * 24 22 20 27 27 H 1.48497 * 109.47122 * 240.00224 * 24 22 20 28 28 C 1.38640 * 120.00314 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.47117 * 269.99527 * 1 2 3 30 30 H 1.09000 * 109.47357 * 30.00244 * 1 2 3 31 31 H 1.09005 * 109.47129 * 150.00616 * 1 2 3 32 32 H 1.08993 * 109.46779 * 239.99990 * 3 2 1 33 33 H 1.08996 * 109.46710 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.46851 * 120.00057 * 3 2 1 35 35 H 1.08006 * 119.88732 * 0.04379 * 5 4 2 36 36 H 1.08007 * 119.88625 * 180.02562 * 6 5 4 37 37 H 1.07996 * 120.00074 * 179.97438 * 7 6 5 38 38 H 1.08992 * 109.46736 * 93.76744 * 12 11 9 39 39 H 1.08999 * 109.47238 * 213.77024 * 12 11 9 40 40 H 1.09003 * 109.46630 * 333.76906 * 12 11 9 41 41 H 1.08998 * 109.47448 * 209.99701 * 13 11 9 42 42 H 1.09000 * 109.47288 * 329.99958 * 13 11 9 43 43 H 0.96706 * 114.00588 * 59.99692 * 16 14 13 44 44 H 1.08997 * 109.47306 * 300.00251 * 17 14 13 45 45 H 1.08997 * 109.46995 * 60.00362 * 17 14 13 46 46 H 1.09002 * 109.47403 * 94.66646 * 19 18 17 47 47 H 1.09000 * 109.47480 * 214.66748 * 19 18 17 48 48 H 1.08999 * 109.47660 * 334.66658 * 19 18 17 49 49 H 0.97004 * 119.99564 * 179.97438 * 23 22 20 50 50 H 1.08004 * 120.11576 * 0.26176 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 3.5538 -1.2100 0.0000 6 6 4.2493 -2.4041 0.0011 7 6 3.5686 -3.6048 0.0017 8 6 2.1728 -3.6158 0.0018 9 6 1.4412 -4.9007 0.0019 10 8 0.3557 -4.9820 0.5430 11 7 1.9778 -5.9818 -0.5977 12 6 3.3215 -5.9069 -1.1768 13 6 1.2176 -7.2319 -0.6707 14 6 0.3869 -7.2494 -1.9554 15 1 -0.2384 -6.3575 -1.9961 16 8 1.2596 -7.2713 -3.0867 17 6 -0.5007 -8.4956 -1.9719 18 7 -1.2966 -8.5121 -3.2018 19 6 -2.6144 -7.8729 -3.2302 20 6 -0.8086 -9.1250 -4.3249 21 1 -0.0329 -9.8715 -4.2389 22 6 -1.3110 -8.7869 -5.5739 23 7 -2.0279 -7.6929 -5.7208 24 14 -0.9695 -9.8845 -7.0465 25 1 -0.1467 -11.0444 -6.6190 26 1 -2.2546 -10.3707 -7.6100 27 1 -0.2364 -9.1112 -8.0808 28 6 1.4705 -2.4106 0.0016 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3634 -0.8901 -0.5138 32 1 2.8241 1.3265 -0.8899 33 1 1.4891 2.0972 0.0005 34 1 2.8241 1.3265 0.8900 35 1 4.0920 -0.2736 -0.0001 36 1 5.3294 -2.3979 0.0011 37 1 4.1159 -4.5359 0.0021 38 1 4.0523 -6.2497 -0.4444 39 1 3.3710 -6.5394 -2.0631 40 1 3.5408 -4.8756 -1.4536 41 1 1.9064 -8.0766 -0.6719 42 1 0.5547 -7.3049 0.1915 43 1 1.8466 -8.0393 -3.1159 44 1 0.1245 -9.3875 -1.9313 45 1 -1.1665 -8.4789 -1.1091 46 1 -2.5168 -6.8557 -3.6096 47 1 -3.2798 -8.4408 -3.8803 48 1 -3.0272 -7.8464 -2.2217 49 1 -2.3787 -7.4564 -6.5937 50 1 0.3905 -2.4129 -0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717944497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = -17.683553 kcal Electronic energy + Delta-G solvation = -29575.739052 eV Core-core repulsion = 25604.351596 eV Total energy + Delta-G solvation = -3971.387456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57212 -40.04324 -38.80532 -37.20367 -36.83087 -35.89948 -33.31694 -32.46081 -31.63294 -30.57207 -29.16181 -28.18720 -27.86469 -27.04725 -25.66344 -24.48629 -23.15860 -22.19698 -22.12325 -20.56768 -18.79676 -18.54193 -17.82620 -17.48772 -17.14464 -16.73371 -16.46026 -16.31916 -16.24145 -16.03555 -15.95383 -15.37964 -15.13339 -15.00239 -14.71971 -14.48320 -14.32548 -14.02349 -13.67938 -13.62483 -13.49183 -13.27819 -13.11600 -13.07972 -12.97663 -12.81153 -12.61479 -12.52039 -12.19148 -12.15551 -12.02311 -11.93097 -11.88149 -11.79118 -11.21355 -10.95368 -10.67044 -10.56403 -9.96539 -9.55946 -8.71392 -8.26526 -7.75629 -5.20549 -0.01283 0.58233 1.48315 1.48899 1.59507 1.70617 2.03203 2.24226 2.56109 2.91262 3.38994 3.48462 3.56096 3.81714 3.91762 4.03569 4.10105 4.16375 4.18082 4.24849 4.33379 4.42652 4.46955 4.51033 4.55772 4.61304 4.64429 4.72641 4.74616 4.78447 4.80179 4.81960 4.88096 4.91042 4.95773 5.02930 5.20930 5.23924 5.28327 5.41480 5.47847 5.55279 5.62823 5.70774 5.82806 6.27568 6.34471 6.36300 6.47283 7.07305 7.11140 7.20046 7.90329 8.36043 9.30345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002663 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.160761 B =10510.816875 C =11024.049450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.646 5.646 3 C 0.093 3.907 4 C 0.195 3.805 5 C -0.173 4.173 6 C -0.074 4.074 7 C -0.157 4.157 8 C -0.103 4.103 9 C 0.544 3.456 10 O -0.589 6.589 11 N -0.596 5.596 12 C 0.056 3.944 13 C 0.092 3.908 14 C 0.089 3.911 15 H 0.036 0.964 16 O -0.555 6.555 17 C 0.120 3.880 18 N -0.609 5.609 19 C 0.177 3.823 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.064 4.064 23 N -0.946 5.946 24 Si 0.969 3.031 25 H -0.259 1.259 26 H -0.298 1.298 27 H -0.299 1.299 28 C -0.170 4.170 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.374 0.626 44 H 0.074 0.926 45 H 0.057 0.943 46 H -0.009 1.009 47 H 0.020 0.980 48 H 0.025 0.975 49 H 0.241 0.759 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.430 13.786 14.847 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.358 5.358 3 C -0.049 4.049 4 C 0.093 3.907 5 C -0.195 4.195 6 C -0.092 4.092 7 C -0.177 4.177 8 C -0.107 4.107 9 C 0.334 3.666 10 O -0.471 6.471 11 N -0.325 5.325 12 C -0.085 4.085 13 C -0.031 4.031 14 C 0.026 3.974 15 H 0.054 0.946 16 O -0.360 6.360 17 C -0.007 4.007 18 N -0.331 5.331 19 C 0.032 3.968 20 C -0.364 4.364 21 H 0.099 0.901 22 C -0.258 4.258 23 N -0.594 5.594 24 Si 0.798 3.202 25 H -0.183 1.183 26 H -0.225 1.225 27 H -0.227 1.227 28 C -0.194 4.194 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.168 0.832 36 H 0.184 0.816 37 H 0.180 0.820 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.222 0.778 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.010 0.990 47 H 0.039 0.961 48 H 0.044 0.956 49 H 0.050 0.950 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.383 14.493 14.854 26.440 hybrid contribution -0.678 -0.669 -1.024 1.399 sum 15.706 13.823 13.830 25.080 Atomic orbital electron populations 1.21741 0.79322 1.02959 1.01475 1.46571 1.05465 1.03485 1.80266 1.21795 0.97534 0.83782 1.01819 1.17858 0.92237 0.85452 0.95177 1.21175 0.91040 1.00465 1.06834 1.21294 1.01457 0.90505 0.95970 1.21946 0.91526 1.01096 1.03166 1.19617 0.95260 0.91433 1.04385 1.18957 0.84836 0.84880 0.77941 1.90719 1.23388 1.85400 1.47584 1.47711 1.18477 1.10896 1.55442 1.22758 0.81171 1.05027 0.99543 1.22256 0.96412 0.86380 0.98101 1.22745 0.90717 0.98903 0.85032 0.94563 1.86662 1.53901 1.48643 1.46824 1.21679 0.94179 0.96280 0.88595 1.44149 1.15214 1.64659 1.09122 1.20495 0.86065 0.95323 0.94937 1.19499 1.18674 1.13458 0.84797 0.90146 1.25785 1.01752 0.97983 1.00263 1.70312 1.41830 1.25025 1.22268 0.85164 0.76845 0.78615 0.79565 1.18285 1.22535 1.22658 1.20677 0.99398 0.91160 1.08122 0.93089 0.89180 0.93258 0.92114 0.89165 0.91838 0.83226 0.81641 0.81955 0.88954 0.90271 0.88932 0.86369 0.90179 0.77838 0.90779 0.92449 0.99022 0.96086 0.95608 0.94958 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.16 127.77 1.30 2.92 16 2 N -0.65 -12.44 3.41 -747.40 -2.55 -14.99 16 3 C 0.09 1.04 9.40 127.77 1.20 2.24 16 4 C 0.19 4.54 6.55 38.17 0.25 4.79 16 5 C -0.17 -3.02 9.31 22.45 0.21 -2.81 16 6 C -0.07 -1.15 10.02 22.21 0.22 -0.92 16 7 C -0.16 -3.14 7.45 22.54 0.17 -2.97 16 8 C -0.10 -2.99 5.48 -20.10 -0.11 -3.10 16 9 C 0.54 18.78 7.45 86.79 0.65 19.42 16 10 O -0.59 -25.22 16.29 -3.90 -0.06 -25.28 16 11 N -0.60 -17.07 2.84 -850.18 -2.41 -19.48 16 12 C 0.06 1.09 8.63 127.77 1.10 2.19 16 13 C 0.09 2.68 5.11 86.38 0.44 3.12 16 14 C 0.09 3.45 3.48 30.60 0.11 3.56 16 15 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 16 O -0.56 -22.23 11.38 -148.98 -1.70 -23.92 16 17 C 0.12 4.80 5.43 86.38 0.47 5.26 16 18 N -0.61 -31.53 2.87 -726.96 -2.09 -33.62 16 19 C 0.18 9.57 9.02 127.77 1.15 10.72 16 20 C -0.23 -12.82 9.02 84.03 0.76 -12.06 16 21 H 0.08 4.11 7.86 -2.91 -0.02 4.08 16 22 C -0.06 -3.72 5.06 84.86 0.43 -3.29 16 23 N -0.95 -59.45 10.72 21.65 0.23 -59.21 16 24 Si 0.97 46.32 29.58 68.60 2.03 48.35 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 C -0.17 -5.05 8.76 22.67 0.20 -4.85 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 31 H 0.05 1.13 6.19 -2.38 -0.01 1.11 16 32 H 0.06 0.61 7.94 -2.39 -0.02 0.59 16 33 H 0.09 0.69 7.79 -2.39 -0.02 0.67 16 34 H 0.06 0.59 7.94 -2.39 -0.02 0.57 16 35 H 0.15 1.74 6.71 -2.91 -0.02 1.72 16 36 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.16 2.38 4.69 -2.91 -0.01 2.37 16 38 H 0.09 1.14 7.38 -2.39 -0.02 1.12 16 39 H 0.08 1.56 7.05 -2.39 -0.02 1.54 16 40 H 0.09 1.80 4.77 -2.39 -0.01 1.79 16 41 H 0.12 2.47 8.07 -2.39 -0.02 2.45 16 42 H 0.08 2.51 7.37 -2.39 -0.02 2.49 16 43 H 0.37 11.66 9.04 -74.05 -0.67 10.99 16 44 H 0.07 2.57 8.03 -2.39 -0.02 2.55 16 45 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 46 H -0.01 -0.52 7.41 -2.39 -0.02 -0.54 16 47 H 0.02 1.18 7.24 -2.39 -0.02 1.17 16 48 H 0.03 1.20 7.84 -2.39 -0.02 1.19 16 49 H 0.24 14.82 8.31 -92.70 -0.77 14.05 16 50 H 0.11 3.56 6.02 -2.91 -0.02 3.54 16 Total: -1.00 -83.66 396.53 2.28 -81.38 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.28 Total: 22.54 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 8.54 Total: 24.22 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.82 Total: -127.29 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.76 Total: -49.20 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -83.66 2.28 -81.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717944497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.700 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds