Wall clock time and date at job start Tue Mar 31 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00246 * 2 1 4 4 C 1.39715 * 119.99655 * 179.97438 * 2 1 3 5 5 C 1.39025 * 120.00157 * 180.02562 * 4 2 1 6 6 C 1.38200 * 120.22203 * 179.97438 * 5 4 2 7 7 C 1.38030 * 120.22448 * 359.74850 * 6 5 4 8 8 C 1.39574 * 120.00442 * 0.50552 * 7 6 5 9 9 C 1.47864 * 120.10972 * 179.76736 * 8 7 6 10 10 O 1.21548 * 120.00226 * 149.07689 * 9 8 7 11 11 N 1.34777 * 120.00210 * 329.07415 * 9 8 7 12 12 C 1.46510 * 119.99710 * 3.83197 * 11 9 8 13 13 C 1.46495 * 120.00489 * 183.83849 * 11 9 8 14 14 C 1.52996 * 109.47616 * 89.99451 * 13 11 9 15 15 H 1.09005 * 109.46772 * 60.00125 * 14 13 11 16 16 O 1.42897 * 109.47148 * 300.00779 * 14 13 11 17 17 C 1.52998 * 109.47316 * 180.02562 * 14 13 11 18 18 N 1.46507 * 109.47036 * 185.00370 * 17 14 13 19 19 C 1.46493 * 119.99994 * 90.00217 * 18 17 14 20 20 C 1.36938 * 119.99604 * 270.00346 * 18 17 14 21 21 H 1.08001 * 120.00569 * 23.08622 * 20 18 17 22 22 C 1.38814 * 119.99591 * 203.08387 * 20 18 17 23 23 N 1.31615 * 120.00048 * 12.17950 * 22 20 18 24 24 Si 1.86798 * 120.00138 * 192.17475 * 22 20 18 25 25 H 1.48504 * 109.47269 * 89.99687 * 24 22 20 26 26 H 1.48502 * 109.47503 * 210.00260 * 24 22 20 27 27 H 1.48511 * 109.47007 * 330.00395 * 24 22 20 28 28 C 1.38631 * 120.00814 * 0.02562 * 4 2 1 29 29 H 1.08993 * 109.47651 * 269.99845 * 1 2 3 30 30 H 1.09000 * 109.47029 * 30.00054 * 1 2 3 31 31 H 1.09007 * 109.47119 * 149.99806 * 1 2 3 32 32 H 1.09000 * 109.47190 * 270.00056 * 3 2 1 33 33 H 1.08999 * 109.46879 * 29.99891 * 3 2 1 34 34 H 1.09004 * 109.46842 * 149.99933 * 3 2 1 35 35 H 1.08004 * 119.89210 * 0.02562 * 5 4 2 36 36 H 1.07998 * 119.89330 * 180.02562 * 6 5 4 37 37 H 1.07998 * 119.99942 * 180.25555 * 7 6 5 38 38 H 1.09004 * 109.46561 * 93.68461 * 12 11 9 39 39 H 1.08998 * 109.47010 * 213.68185 * 12 11 9 40 40 H 1.08994 * 109.47256 * 333.68836 * 12 11 9 41 41 H 1.09001 * 109.47418 * 210.00191 * 13 11 9 42 42 H 1.09003 * 109.46437 * 329.99650 * 13 11 9 43 43 H 0.96698 * 114.00350 * 299.99393 * 16 14 13 44 44 H 1.08992 * 109.47577 * 305.00380 * 17 14 13 45 45 H 1.08999 * 109.46595 * 65.00560 * 17 14 13 46 46 H 1.09001 * 109.46992 * 87.17739 * 19 18 17 47 47 H 1.09000 * 109.47167 * 207.17781 * 19 18 17 48 48 H 1.08996 * 109.47394 * 327.17686 * 19 18 17 49 49 H 0.97004 * 120.00031 * 180.02562 * 23 22 20 50 50 H 1.08005 * 120.11179 * 0.03532 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2100 0.0005 5 6 3.5537 -1.2101 0.0011 6 6 4.2493 -2.4044 0.0022 7 6 3.5684 -3.6050 0.0079 8 6 2.1727 -3.6159 0.0020 9 6 1.4409 -4.9008 0.0030 10 8 0.3532 -4.9803 0.5396 11 7 1.9800 -5.9838 -0.5911 12 6 3.3263 -5.9108 -1.1642 13 6 1.2197 -7.2339 -0.6640 14 6 0.3949 -7.2549 -1.9524 15 1 1.0617 -7.1846 -2.8118 16 8 -0.5079 -6.1473 -1.9582 17 6 -0.3996 -8.5603 -2.0281 18 7 -1.0957 -8.6343 -3.3152 19 6 -0.4385 -9.2536 -4.4687 20 6 -2.3606 -8.1246 -3.4397 21 1 -2.7058 -7.3632 -2.7560 22 6 -3.1990 -8.5866 -4.4449 23 7 -2.8800 -9.6690 -5.1224 24 14 -4.7803 -7.6722 -4.8361 25 1 -4.5136 -6.6433 -5.8731 26 1 -5.7953 -8.6318 -5.3402 27 1 -5.2890 -7.0144 -3.6056 28 6 1.4704 -2.4106 0.0005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 2.3792 1.5833 -1.0277 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1382 0.5139 35 1 4.0921 -0.2738 0.0015 36 1 5.3292 -2.3983 0.0030 37 1 4.1155 -4.5361 0.0129 38 1 4.0539 -6.2503 -0.4270 39 1 3.3801 -6.5471 -2.0476 40 1 3.5466 -4.8808 -1.4444 41 1 1.9083 -8.0788 -0.6596 42 1 0.5529 -7.3041 0.1955 43 1 -1.1323 -6.1448 -1.2198 44 1 0.2813 -9.4061 -1.9342 45 1 -1.1288 -8.5892 -1.2185 46 1 -0.6276 -10.3270 -4.4616 47 1 -0.8341 -8.8211 -5.3877 48 1 0.6351 -9.0735 -4.4152 49 1 -3.4657 -9.9916 -5.8251 50 1 0.3904 -2.4128 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717944499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:26 Heat of formation + Delta-G solvation = -16.371231 kcal Electronic energy + Delta-G solvation = -29581.138873 eV Core-core repulsion = 25609.808323 eV Total energy + Delta-G solvation = -3971.330549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52348 -40.03370 -38.71243 -37.15905 -36.78165 -36.00648 -33.34288 -32.42875 -31.59096 -30.52875 -29.15763 -28.19865 -27.89619 -27.00992 -25.64705 -24.48799 -23.06884 -22.21597 -22.03092 -20.55222 -18.84535 -18.49159 -17.80346 -17.52429 -17.04001 -16.85224 -16.50833 -16.37017 -16.16801 -15.99727 -15.91961 -15.32284 -15.04015 -14.93874 -14.73606 -14.43932 -14.39581 -13.97753 -13.74459 -13.59216 -13.44249 -13.26598 -13.12364 -13.06775 -12.94749 -12.83579 -12.63417 -12.49433 -12.25321 -12.12244 -12.04104 -11.90866 -11.87788 -11.82101 -11.19765 -10.91415 -10.68280 -10.55681 -9.92773 -9.55607 -8.66731 -8.23727 -7.82538 -5.26964 0.03180 0.60820 1.42903 1.44925 1.53513 1.77869 2.08555 2.25727 2.51441 2.94850 3.31507 3.48530 3.60883 3.78111 3.94609 4.05514 4.08198 4.18100 4.20988 4.25884 4.38241 4.43311 4.48086 4.48382 4.55930 4.59390 4.64751 4.73785 4.77244 4.78833 4.83150 4.84231 4.89867 4.94103 4.94732 4.99080 5.22930 5.26786 5.36883 5.44151 5.50639 5.57597 5.63190 5.71893 5.85082 6.28694 6.36517 6.40138 6.49889 6.90641 7.17847 7.19245 7.89548 8.31647 9.22333 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002828 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.209476 B = 9897.327309 C =11335.016797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.195 3.805 5 C -0.177 4.177 6 C -0.074 4.074 7 C -0.161 4.161 8 C -0.101 4.101 9 C 0.553 3.447 10 O -0.580 6.580 11 N -0.600 5.600 12 C 0.052 3.948 13 C 0.091 3.909 14 C 0.083 3.917 15 H 0.080 0.920 16 O -0.564 6.564 17 C 0.122 3.878 18 N -0.613 5.613 19 C 0.176 3.824 20 C -0.239 4.239 21 H 0.064 0.936 22 C -0.061 4.061 23 N -0.943 5.943 24 Si 0.964 3.036 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.272 1.272 28 C -0.168 4.168 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.368 0.632 44 H 0.069 0.931 45 H 0.045 0.955 46 H -0.001 1.001 47 H 0.024 0.976 48 H 0.028 0.972 49 H 0.246 0.754 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.854 18.640 12.567 30.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.358 5.358 3 C -0.052 4.052 4 C 0.093 3.907 5 C -0.200 4.200 6 C -0.092 4.092 7 C -0.181 4.181 8 C -0.104 4.104 9 C 0.344 3.656 10 O -0.461 6.461 11 N -0.330 5.330 12 C -0.089 4.089 13 C -0.033 4.033 14 C 0.020 3.980 15 H 0.098 0.902 16 O -0.369 6.369 17 C -0.005 4.005 18 N -0.335 5.335 19 C 0.031 3.969 20 C -0.370 4.370 21 H 0.082 0.918 22 C -0.255 4.255 23 N -0.591 5.591 24 Si 0.793 3.207 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.197 1.197 28 C -0.191 4.191 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.092 0.908 43 H 0.214 0.786 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.017 0.983 47 H 0.043 0.957 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.441 18.825 12.169 30.336 hybrid contribution -1.931 -0.093 -0.154 1.940 sum 18.510 18.732 12.015 28.946 Atomic orbital electron populations 1.21694 0.79359 1.02937 1.01443 1.46558 1.05453 1.03496 1.80331 1.21820 0.97690 0.83778 1.01925 1.17891 0.92234 0.85511 0.95107 1.21212 0.91096 1.00503 1.07164 1.21282 1.01395 0.90549 0.95995 1.21949 0.91636 1.01016 1.03471 1.19645 0.95149 0.91636 1.04019 1.18762 0.84733 0.84492 0.77641 1.90691 1.22928 1.85226 1.47246 1.47650 1.17976 1.10862 1.56548 1.22769 0.81429 1.05033 0.99640 1.22205 0.96478 0.86493 0.98122 1.22977 0.90420 0.87617 0.96967 0.90241 1.86518 1.50036 1.47629 1.52730 1.21526 0.95380 0.95904 0.87658 1.43998 1.14199 1.68849 1.06488 1.20538 0.91787 0.94934 0.89632 1.19449 0.89956 1.13872 1.13678 0.91788 1.25707 1.01089 0.97595 1.01063 1.70212 1.39191 1.23455 1.26224 0.85298 0.79809 0.77544 0.78010 1.21823 1.21871 1.19733 1.20669 0.99446 0.91077 1.07942 0.93136 0.89440 0.93025 0.92780 0.90102 0.90118 0.83159 0.81766 0.81981 0.89016 0.90515 0.88562 0.86378 0.90761 0.78588 0.91233 0.93686 0.98263 0.95749 0.95386 0.94439 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 10.19 127.77 1.30 2.88 16 2 N -0.65 -11.84 3.41 -747.42 -2.55 -14.39 16 3 C 0.09 0.94 10.19 127.77 1.30 2.24 16 4 C 0.19 4.26 6.55 38.17 0.25 4.51 16 5 C -0.18 -2.84 9.20 22.45 0.21 -2.64 16 6 C -0.07 -1.03 10.02 22.21 0.22 -0.81 16 7 C -0.16 -2.91 7.45 22.54 0.17 -2.74 16 8 C -0.10 -2.71 5.48 -20.10 -0.11 -2.82 16 9 C 0.55 17.64 6.90 86.79 0.60 18.24 16 10 O -0.58 -22.98 15.34 -0.62 -0.01 -22.99 16 11 N -0.60 -15.64 2.83 -850.17 -2.40 -18.05 16 12 C 0.05 0.86 8.79 127.77 1.12 1.99 16 13 C 0.09 2.47 5.18 86.38 0.45 2.92 16 14 C 0.08 2.94 3.48 30.59 0.11 3.05 16 15 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 16 O -0.56 -24.21 11.46 -145.74 -1.67 -25.88 16 17 C 0.12 4.92 5.36 86.38 0.46 5.39 16 18 N -0.61 -31.77 2.90 -726.96 -2.11 -33.88 16 19 C 0.18 8.95 8.99 127.77 1.15 10.10 16 20 C -0.24 -13.82 9.21 84.03 0.77 -13.05 16 21 H 0.06 3.71 7.57 -2.91 -0.02 3.68 16 22 C -0.06 -3.58 5.07 84.86 0.43 -3.16 16 23 N -0.94 -58.00 10.72 21.65 0.23 -57.77 16 24 Si 0.96 48.20 29.57 68.60 2.03 50.23 16 25 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 28 C -0.17 -4.69 8.76 22.67 0.20 -4.49 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16 31 H 0.05 1.13 6.19 -2.38 -0.01 1.12 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 34 H 0.08 0.63 6.19 -2.38 -0.01 0.62 16 35 H 0.15 1.54 6.12 -2.91 -0.02 1.52 16 36 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.16 2.06 4.69 -2.91 -0.01 2.05 16 38 H 0.09 0.94 7.38 -2.39 -0.02 0.92 16 39 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 40 H 0.10 1.55 4.78 -2.39 -0.01 1.54 16 41 H 0.12 2.36 8.07 -2.39 -0.02 2.34 16 42 H 0.07 2.24 7.37 -2.39 -0.02 2.22 16 43 H 0.37 15.45 8.57 -74.06 -0.63 14.82 16 44 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 45 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 46 H 0.00 -0.05 7.78 -2.39 -0.02 -0.07 16 47 H 0.02 1.36 6.78 -2.39 -0.02 1.34 16 48 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 49 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.11 3.41 6.01 -2.91 -0.02 3.40 16 Total: -1.00 -80.53 395.12 2.47 -78.06 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.32 Total: 23.04 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 8.63 Total: 21.62 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.83 Total: -124.08 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.68 Total: -48.87 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -80.53 2.47 -78.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717944499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.690 kcal (2) G-P(sol) polarization free energy of solvation -80.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds