Wall clock time and date at job start Tue Mar 31 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00175 * 2 1 4 4 C 1.52994 * 109.46976 * 123.10097 * 3 2 1 5 5 C 1.53002 * 109.47155 * 294.40546 * 4 3 2 6 6 C 1.50699 * 109.47117 * 294.31272 * 5 4 3 7 7 C 1.30996 * 120.00015 * 125.00145 * 6 5 4 8 8 C 1.50699 * 109.47268 * 54.40833 * 4 3 2 9 9 O 1.21277 * 120.00012 * 239.99399 * 8 4 3 10 10 N 1.34778 * 119.99921 * 60.00366 * 8 4 3 11 11 C 1.46497 * 119.99996 * 359.97438 * 10 8 4 12 12 C 1.46500 * 119.99587 * 180.02562 * 10 8 4 13 13 C 1.53943 * 113.73105 * 239.99234 * 12 10 8 14 14 N 1.47962 * 86.17950 * 269.36358 * 13 12 10 15 15 C 1.46904 * 110.99899 * 222.41471 * 14 13 12 16 16 C 1.50696 * 109.46996 * 170.00363 * 15 14 13 17 17 O 1.21294 * 120.00205 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99954 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00083 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00119 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00229 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47149 * 89.99771 * 23 21 19 25 25 H 1.48500 * 109.47003 * 209.99817 * 23 21 19 26 26 H 1.48495 * 109.46936 * 329.99956 * 23 21 19 27 27 C 1.47954 * 90.76501 * 335.31205 * 14 13 12 28 28 H 1.07999 * 120.00396 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00036 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99974 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47116 * 3.09802 * 3 2 1 32 32 H 1.09005 * 109.46915 * 243.09818 * 3 2 1 33 33 H 1.09003 * 109.46927 * 174.40980 * 4 3 2 34 34 H 1.08998 * 109.46887 * 54.31576 * 5 4 3 35 35 H 1.09002 * 109.46885 * 174.31272 * 5 4 3 36 36 H 1.07996 * 120.00045 * 304.99809 * 6 5 4 37 37 H 1.08004 * 120.00262 * 180.02562 * 7 6 5 38 38 H 1.07996 * 119.99940 * 359.97438 * 7 6 5 39 39 H 1.09000 * 109.47249 * 270.00330 * 11 10 8 40 40 H 1.09004 * 109.47300 * 30.00750 * 11 10 8 41 41 H 1.09003 * 109.47089 * 150.00605 * 11 10 8 42 42 H 1.08996 * 113.01570 * 11.63076 * 12 10 8 43 43 H 1.08999 * 113.75548 * 23.68233 * 13 12 10 44 44 H 1.08996 * 113.75789 * 155.04874 * 13 12 10 45 45 H 1.08995 * 109.47089 * 290.00394 * 15 14 13 46 46 H 1.09000 * 109.47004 * 50.00371 * 15 14 13 47 47 H 0.97005 * 119.99814 * 359.97438 * 18 16 15 48 48 H 0.96998 * 119.99705 * 180.02562 * 22 21 19 49 49 H 1.09006 * 113.75636 * 270.37378 * 27 14 13 50 50 H 1.09001 * 113.76316 * 139.00870 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0007 1.3528 1.2084 5 6 2.1731 1.3781 2.4950 6 6 1.3913 2.6645 2.5642 7 6 0.0907 2.6332 2.7174 8 6 3.8871 0.1341 1.2050 9 8 3.8597 -0.6382 2.1397 10 7 4.7105 -0.0975 0.1634 11 6 4.7433 0.8352 -0.9658 12 6 5.5718 -1.2826 0.1600 13 6 7.0743 -0.9562 0.0846 14 7 6.9169 -1.0359 -1.3844 15 6 8.0418 -1.7560 -1.9961 16 6 7.7330 -2.0323 -3.4450 17 8 6.6794 -1.6658 -3.9212 18 7 8.6272 -2.6875 -4.2115 19 6 8.3462 -2.9393 -5.5295 20 1 7.4080 -2.6129 -5.9535 21 6 9.2678 -3.6153 -6.3197 22 7 10.4092 -4.0128 -5.8036 23 14 8.8852 -3.9577 -8.1157 24 1 9.3714 -2.8290 -8.9493 25 1 9.5621 -5.2109 -8.5358 26 1 7.4178 -4.1053 -8.2896 27 6 5.7414 -1.9211 -1.2303 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3565 2.1328 0.0555 32 1 2.6479 1.3872 -0.9165 33 1 3.6168 2.2504 1.1550 34 1 1.4842 0.5334 2.5004 35 1 2.8380 1.3101 3.3560 36 1 1.9033 3.6123 2.4876 37 1 -0.4696 3.5552 2.7667 38 1 -0.4213 1.6854 2.7937 39 1 4.0104 0.5284 -1.7119 40 1 4.5058 1.8395 -0.6146 41 1 5.7383 0.8319 -1.4110 42 1 5.3168 -1.9969 0.9428 43 1 7.3257 0.0410 0.4459 44 1 7.7141 -1.7344 0.5006 45 1 8.9436 -1.1478 -1.9263 46 1 8.1979 -2.6988 -1.4717 47 1 9.4697 -2.9809 -3.8306 48 1 11.0527 -4.4843 -6.3552 49 1 5.9915 -2.9816 -1.1989 50 1 4.9279 -1.6950 -1.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723762956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:28 Heat of formation + Delta-G solvation = 14.565556 kcal Electronic energy + Delta-G solvation = -29379.470201 eV Core-core repulsion = 25409.481171 eV Total energy + Delta-G solvation = -3969.989030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95815 -39.50534 -37.76679 -36.68028 -34.98940 -34.01579 -33.84892 -31.46858 -31.22330 -29.77392 -27.26135 -26.52961 -26.05589 -25.52008 -24.14154 -22.85691 -20.71584 -20.36375 -19.37351 -19.29549 -18.49874 -17.92463 -17.05888 -16.38169 -16.05144 -15.95093 -15.47452 -15.41377 -15.00496 -14.88184 -14.63030 -14.23904 -14.11709 -13.72974 -13.50128 -13.32185 -13.09945 -12.86995 -12.57672 -12.43466 -12.34241 -12.15174 -11.96239 -11.60019 -11.57433 -11.56026 -11.49101 -11.26526 -11.11269 -10.94918 -10.86137 -10.75489 -10.41899 -10.24074 -9.77267 -9.59121 -9.53025 -9.42537 -8.72331 -8.59022 -8.26061 -7.99158 -6.44398 -3.85270 2.00092 2.13172 2.54688 2.90086 3.15579 3.24472 3.30013 3.86158 3.97208 4.18676 4.27136 4.48839 4.56006 4.72765 4.75379 4.83848 4.93503 4.98342 5.00381 5.09523 5.16571 5.20240 5.33239 5.41176 5.46976 5.48831 5.56390 5.60731 5.64154 5.67778 5.69743 5.71036 5.76607 5.80838 5.84832 5.94556 6.11869 6.14568 6.22337 6.36633 6.48691 6.51856 6.53892 6.59831 6.60638 7.11138 7.39246 7.52400 8.02710 8.10954 8.58190 9.15087 9.51275 10.02568 10.73296 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.002205 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.475556 B =12694.108461 C =13421.372142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C -0.098 4.098 4 C -0.095 4.095 5 C -0.075 4.075 6 C -0.149 4.149 7 C -0.194 4.194 8 C 0.521 3.479 9 O -0.546 6.546 10 N -0.586 5.586 11 C 0.069 3.931 12 C 0.111 3.889 13 C -0.013 4.013 14 N -0.451 5.451 15 C 0.009 3.991 16 C 0.444 3.556 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.014 3.986 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.076 0.924 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.280 11.177 15.862 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.165 4.165 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.167 4.167 7 C -0.230 4.230 8 C 0.310 3.690 9 O -0.423 6.423 10 N -0.317 5.317 11 C -0.074 4.074 12 C 0.005 3.995 13 C -0.143 4.143 14 N -0.174 5.174 15 C -0.123 4.123 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.115 4.115 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.876 11.504 15.516 23.783 hybrid contribution 0.822 -1.192 -0.463 1.521 sum -13.053 10.312 15.053 22.435 Atomic orbital electron populations 1.23793 0.95808 1.01657 1.01679 1.22886 0.96170 0.98219 0.99260 1.21053 0.98375 0.96471 0.97628 1.21240 0.96297 0.96987 0.97135 1.20584 0.98581 0.95880 0.96238 1.22930 0.96002 0.98305 0.99504 1.23851 0.95989 1.01766 1.01444 1.20606 0.79621 0.87187 0.81601 1.90673 1.68015 1.48390 1.35237 1.47435 1.39695 1.24458 1.20154 1.22153 1.05666 0.91184 0.88368 1.22470 0.89877 0.87998 0.99109 1.24477 0.96207 1.02757 0.90843 1.68395 1.03494 1.37410 1.08072 1.22471 0.96021 0.97876 0.95966 1.19674 0.86168 0.84085 0.87177 1.90513 1.25731 1.55894 1.74262 1.41880 1.17828 1.49985 1.10395 1.19682 1.04128 1.33836 0.85163 0.87952 1.25270 0.95194 0.97003 1.00530 1.69612 1.07927 1.39391 1.37348 0.85856 0.78726 0.77748 0.81955 1.20384 1.20936 1.19442 1.24164 0.95956 0.96343 0.95080 0.88694 0.88598 0.87612 0.90212 0.89166 0.88278 0.90515 0.90264 0.87460 0.88668 0.88555 0.92207 0.91724 0.87783 0.87562 0.89226 0.90454 0.89167 0.92693 0.77510 0.91865 0.90569 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 29.02 0.42 -1.29 16 2 C -0.15 -1.46 7.81 -36.02 -0.28 -1.74 16 3 C -0.10 -0.82 4.94 -27.89 -0.14 -0.96 16 4 C -0.10 -0.86 1.68 -91.77 -0.15 -1.01 16 5 C -0.08 -0.69 4.39 -27.88 -0.12 -0.81 16 6 C -0.15 -1.09 8.45 -36.03 -0.30 -1.40 16 7 C -0.19 -1.35 14.32 29.02 0.42 -0.93 16 8 C 0.52 6.31 5.81 -10.99 -0.06 6.25 16 9 O -0.55 -8.36 15.40 5.56 0.09 -8.27 16 10 N -0.59 -6.94 3.09 -175.27 -0.54 -7.49 16 11 C 0.07 0.74 7.74 59.85 0.46 1.20 16 12 C 0.11 1.41 4.51 -69.62 -0.31 1.10 16 13 C -0.01 -0.15 7.45 -2.76 -0.02 -0.17 16 14 N -0.45 -6.90 4.08 -239.88 -0.98 -7.88 16 15 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 16 C 0.44 10.14 7.59 -10.99 -0.08 10.06 16 17 O -0.58 -15.08 15.13 5.55 0.08 -14.99 16 18 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.01 0.21 5.99 -2.77 -0.02 0.19 16 28 H 0.09 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 30 H 0.11 1.24 7.50 -52.49 -0.39 0.85 16 31 H 0.08 0.59 6.88 -51.93 -0.36 0.23 16 32 H 0.09 0.74 4.70 -51.93 -0.24 0.50 16 33 H 0.10 0.73 7.40 -51.93 -0.38 0.35 16 34 H 0.08 0.80 6.88 -51.93 -0.36 0.44 16 35 H 0.08 0.80 7.93 -51.93 -0.41 0.38 16 36 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.09 0.55 8.06 -52.48 -0.42 0.12 16 38 H 0.10 0.69 7.84 -52.49 -0.41 0.28 16 39 H 0.06 0.66 7.08 -51.93 -0.37 0.30 16 40 H 0.06 0.52 5.94 -51.93 -0.31 0.22 16 41 H 0.10 1.34 6.07 -51.93 -0.32 1.02 16 42 H 0.11 1.41 7.25 -51.93 -0.38 1.03 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 45 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.06 0.84 7.69 -51.93 -0.40 0.45 16 47 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.08 1.14 7.78 -51.93 -0.40 0.73 16 50 H 0.10 1.64 7.76 -51.93 -0.40 1.24 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -31.58 400.55 -8.04 -39.62 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.90 Total: 12.09 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.47 Total: 2.73 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.85 Total: -53.08 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.58 -8.04 -39.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723762956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.187 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds