Wall clock time and date at job start Tue Mar 31 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00175 * 2 1 4 4 C 1.52994 * 109.46976 * 123.10097 * 3 2 1 5 5 C 1.53002 * 109.47155 * 294.40546 * 4 3 2 6 6 C 1.50699 * 109.47117 * 294.31272 * 5 4 3 7 7 C 1.30996 * 120.00015 * 125.00145 * 6 5 4 8 8 C 1.50699 * 109.47268 * 54.40833 * 4 3 2 9 9 O 1.21277 * 120.00012 * 239.99399 * 8 4 3 10 10 N 1.34778 * 119.99921 * 60.00366 * 8 4 3 11 11 C 1.46497 * 119.99996 * 359.97438 * 10 8 4 12 12 C 1.46500 * 119.99587 * 180.02562 * 10 8 4 13 13 C 1.53943 * 113.73105 * 239.99234 * 12 10 8 14 14 N 1.47962 * 86.17950 * 269.36358 * 13 12 10 15 15 C 1.46904 * 110.99899 * 222.41471 * 14 13 12 16 16 C 1.50696 * 109.46996 * 170.00363 * 15 14 13 17 17 O 1.21294 * 120.00205 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99954 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00083 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00119 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00229 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47149 * 89.99771 * 23 21 19 25 25 H 1.48500 * 109.47003 * 209.99817 * 23 21 19 26 26 H 1.48495 * 109.46936 * 329.99956 * 23 21 19 27 27 C 1.47954 * 90.76501 * 335.31205 * 14 13 12 28 28 H 1.07999 * 120.00396 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00036 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99974 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47116 * 3.09802 * 3 2 1 32 32 H 1.09005 * 109.46915 * 243.09818 * 3 2 1 33 33 H 1.09003 * 109.46927 * 174.40980 * 4 3 2 34 34 H 1.08998 * 109.46887 * 54.31576 * 5 4 3 35 35 H 1.09002 * 109.46885 * 174.31272 * 5 4 3 36 36 H 1.07996 * 120.00045 * 304.99809 * 6 5 4 37 37 H 1.08004 * 120.00262 * 180.02562 * 7 6 5 38 38 H 1.07996 * 119.99940 * 359.97438 * 7 6 5 39 39 H 1.09000 * 109.47249 * 270.00330 * 11 10 8 40 40 H 1.09004 * 109.47300 * 30.00750 * 11 10 8 41 41 H 1.09003 * 109.47089 * 150.00605 * 11 10 8 42 42 H 1.08996 * 113.01570 * 11.63076 * 12 10 8 43 43 H 1.08999 * 113.75548 * 23.68233 * 13 12 10 44 44 H 1.08996 * 113.75789 * 155.04874 * 13 12 10 45 45 H 1.08995 * 109.47089 * 290.00394 * 15 14 13 46 46 H 1.09000 * 109.47004 * 50.00371 * 15 14 13 47 47 H 0.97005 * 119.99814 * 359.97438 * 18 16 15 48 48 H 0.96998 * 119.99705 * 180.02562 * 22 21 19 49 49 H 1.09006 * 113.75636 * 270.37378 * 27 14 13 50 50 H 1.09001 * 113.76316 * 139.00870 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0007 1.3528 1.2084 5 6 2.1731 1.3781 2.4950 6 6 1.3913 2.6645 2.5642 7 6 0.0907 2.6332 2.7174 8 6 3.8871 0.1341 1.2050 9 8 3.8597 -0.6382 2.1397 10 7 4.7105 -0.0975 0.1634 11 6 4.7433 0.8352 -0.9658 12 6 5.5718 -1.2826 0.1600 13 6 7.0743 -0.9562 0.0846 14 7 6.9169 -1.0359 -1.3844 15 6 8.0418 -1.7560 -1.9961 16 6 7.7330 -2.0323 -3.4450 17 8 6.6794 -1.6658 -3.9212 18 7 8.6272 -2.6875 -4.2115 19 6 8.3462 -2.9393 -5.5295 20 1 7.4080 -2.6129 -5.9535 21 6 9.2678 -3.6153 -6.3197 22 7 10.4092 -4.0128 -5.8036 23 14 8.8852 -3.9577 -8.1157 24 1 9.3714 -2.8290 -8.9493 25 1 9.5621 -5.2109 -8.5358 26 1 7.4178 -4.1053 -8.2896 27 6 5.7414 -1.9211 -1.2303 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3565 2.1328 0.0555 32 1 2.6479 1.3872 -0.9165 33 1 3.6168 2.2504 1.1550 34 1 1.4842 0.5334 2.5004 35 1 2.8380 1.3101 3.3560 36 1 1.9033 3.6123 2.4876 37 1 -0.4696 3.5552 2.7667 38 1 -0.4213 1.6854 2.7937 39 1 4.0104 0.5284 -1.7119 40 1 4.5058 1.8395 -0.6146 41 1 5.7383 0.8319 -1.4110 42 1 5.3168 -1.9969 0.9428 43 1 7.3257 0.0410 0.4459 44 1 7.7141 -1.7344 0.5006 45 1 8.9436 -1.1478 -1.9263 46 1 8.1979 -2.6988 -1.4717 47 1 9.4697 -2.9809 -3.8306 48 1 11.0527 -4.4843 -6.3552 49 1 5.9915 -2.9816 -1.1989 50 1 4.9279 -1.6950 -1.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723762956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:27 Heat of formation + Delta-G solvation = -5.970670 kcal Electronic energy + Delta-G solvation = -29380.360719 eV Core-core repulsion = 25409.481171 eV Total energy + Delta-G solvation = -3970.879547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00863 -40.67594 -39.46484 -37.51004 -36.10915 -35.77448 -34.65659 -33.29318 -32.21292 -31.00041 -28.24650 -27.35958 -27.26703 -26.95919 -25.46817 -23.93360 -21.57526 -21.06949 -21.06508 -20.13589 -19.92374 -19.44764 -18.07083 -17.83203 -17.21104 -16.97689 -16.69292 -16.37941 -16.32014 -16.06449 -15.80499 -15.54539 -15.27721 -15.08840 -14.77404 -14.31562 -14.17480 -13.92218 -13.73443 -13.49605 -13.38652 -13.27338 -13.08109 -13.01206 -12.93854 -12.70738 -12.42860 -12.33251 -12.29026 -12.15609 -12.12694 -11.96567 -11.81656 -11.59190 -11.49310 -10.72700 -10.31426 -10.25500 -10.09237 -10.01018 -9.72913 -9.59117 -8.46840 -5.95140 1.37222 1.38372 1.41017 1.45109 1.53400 1.60278 1.97499 2.05881 2.28127 2.78691 3.19968 3.26613 3.43308 3.55753 3.77329 3.82627 4.02393 4.05761 4.19033 4.23160 4.26717 4.30930 4.41103 4.44284 4.45825 4.50243 4.54888 4.60194 4.62158 4.71897 4.80583 4.81881 4.90440 4.91631 4.97162 5.06753 5.11210 5.22875 5.27615 5.31274 5.40916 5.58124 5.74852 5.81803 5.84049 5.86618 5.98218 6.04735 6.44703 6.60061 7.12883 7.15287 7.56675 8.12020 8.70553 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.002205 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.475556 B =12694.108461 C =13421.372142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.089 4.089 5 C -0.070 4.070 6 C -0.153 4.153 7 C -0.192 4.192 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.586 5.586 11 C 0.072 3.928 12 C 0.117 3.883 13 C 0.001 3.999 14 N -0.463 5.463 15 C 0.020 3.980 16 C 0.443 3.557 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.012 3.988 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.073 0.927 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.383 12.842 16.421 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.110 4.110 5 C -0.108 4.108 6 C -0.171 4.171 7 C -0.228 4.228 8 C 0.310 3.690 9 O -0.462 6.462 10 N -0.316 5.316 11 C -0.069 4.069 12 C 0.012 3.988 13 C -0.128 4.128 14 N -0.186 5.186 15 C -0.111 4.111 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.118 4.118 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.128 0.872 46 H 0.095 0.905 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.963 13.180 16.086 25.048 hybrid contribution 0.769 -1.727 -0.585 1.979 sum -13.194 11.453 15.501 23.356 Atomic orbital electron populations 1.23941 0.95488 1.02496 1.00167 1.22865 0.96659 0.98039 1.00755 1.21032 0.98427 0.96054 0.97282 1.21285 0.96090 0.96181 0.97436 1.20488 0.98147 0.96397 0.95763 1.22919 0.96015 0.97921 1.00197 1.23981 0.96017 1.02226 1.00595 1.21187 0.79346 0.87685 0.80813 1.90654 1.69072 1.49880 1.36641 1.47515 1.39497 1.24184 1.20446 1.22167 1.04369 0.92500 0.87903 1.22336 0.90842 0.88339 0.97303 1.24510 0.95716 1.04172 0.88426 1.68425 1.02868 1.37077 1.10243 1.22382 0.97295 0.99599 0.91843 1.20708 0.84970 0.82059 0.89273 1.90489 1.27126 1.56758 1.75705 1.41957 1.18466 1.50919 1.10004 1.19627 1.03910 1.35547 0.86851 0.90344 1.26030 0.94866 0.96283 1.04258 1.69672 1.08360 1.39450 1.38712 0.84942 0.78265 0.78073 0.77159 1.19625 1.19673 1.19824 1.24084 0.95407 0.96346 0.95945 0.88765 0.86838 0.90318 0.88367 0.88912 0.85733 0.92411 0.91559 0.85653 0.87050 0.89247 0.92969 0.88502 0.89568 0.88015 0.87923 0.88513 0.87165 0.90523 0.77090 0.91375 0.90837 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.16 -3.24 7.81 25.65 0.20 -3.04 16 3 C -0.09 -1.38 4.94 29.85 0.15 -1.23 16 4 C -0.09 -1.46 1.68 -11.54 -0.02 -1.48 16 5 C -0.07 -1.21 4.39 29.85 0.13 -1.08 16 6 C -0.15 -1.88 8.45 25.65 0.22 -1.67 16 7 C -0.19 -2.24 14.32 67.78 0.97 -1.27 16 8 C 0.52 12.33 5.81 87.66 0.51 12.84 16 9 O -0.58 -18.06 15.40 -3.02 -0.05 -18.10 16 10 N -0.59 -13.57 3.09 -826.81 -2.56 -16.13 16 11 C 0.07 1.49 7.74 127.77 0.99 2.48 16 12 C 0.12 2.96 4.51 46.56 0.21 3.17 16 13 C 0.00 0.03 7.45 86.41 0.64 0.67 16 14 N -0.46 -13.78 4.08 -912.84 -3.72 -17.50 16 15 C 0.02 0.67 5.31 85.56 0.45 1.12 16 16 C 0.44 20.46 7.59 87.66 0.67 21.12 16 17 O -0.61 -32.85 15.13 -3.07 -0.05 -32.90 16 18 N -0.58 -29.13 5.29 -306.98 -1.62 -30.75 16 19 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 23 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.01 0.36 5.99 86.41 0.52 0.88 16 28 H 0.09 1.57 8.06 -2.91 -0.02 1.54 16 29 H 0.11 1.51 7.84 -2.91 -0.02 1.49 16 30 H 0.08 1.97 7.50 -2.91 -0.02 1.94 16 31 H 0.10 1.17 6.88 -2.39 -0.02 1.15 16 32 H 0.09 1.37 4.70 -2.38 -0.01 1.36 16 33 H 0.12 1.44 7.40 -2.39 -0.02 1.42 16 34 H 0.06 1.20 6.88 -2.39 -0.02 1.19 16 35 H 0.07 1.30 7.93 -2.39 -0.02 1.28 16 36 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.11 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.09 1.16 7.84 -2.91 -0.02 1.14 16 39 H 0.05 1.16 7.08 -2.39 -0.02 1.14 16 40 H 0.10 1.33 5.94 -2.38 -0.01 1.32 16 41 H 0.09 2.14 6.07 -2.39 -0.01 2.13 16 42 H 0.10 2.70 7.25 -2.39 -0.02 2.68 16 43 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.10 1.85 7.79 -2.39 -0.02 1.83 16 45 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.08 2.21 7.69 -2.39 -0.02 2.19 16 47 H 0.40 19.05 7.90 -92.70 -0.73 18.32 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.07 2.23 7.78 -2.38 -0.02 2.22 16 50 H 0.07 2.57 7.76 -2.39 -0.02 2.55 16 Total: -1.00 -69.99 400.55 2.41 -67.59 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.20 Total: 39.87 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 7.89 Total: 12.32 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -7.62 Total: -113.59 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.09 Total: -51.00 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.99 2.41 -67.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723762956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -69.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds