Wall clock time and date at job start Tue Mar 31 2020 18:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99965 * 2 1 4 4 O 1.21281 * 119.99829 * 355.53057 * 3 2 1 5 5 C 1.50703 * 120.00115 * 175.53098 * 3 2 1 6 6 C 1.50699 * 115.54669 * 278.97500 * 5 3 2 7 7 O 1.21285 * 120.00100 * 118.17289 * 6 5 3 8 8 N 1.34776 * 120.00104 * 298.16024 * 6 5 3 9 9 C 1.46502 * 120.00077 * 174.66063 * 8 6 5 10 10 H 1.08998 * 109.67501 * 35.51044 * 9 8 6 11 11 C 1.53327 * 109.67460 * 275.00211 * 9 8 6 12 12 C 1.52829 * 108.09264 * 176.14919 * 11 9 8 13 13 C 1.50732 * 111.74512 * 58.91351 * 12 11 9 14 14 H 1.09004 * 109.27012 * 186.23416 * 13 12 11 15 15 C 1.53907 * 113.02079 * 65.13226 * 13 12 11 16 16 N 1.47818 * 104.06274 * 198.52443 * 15 13 12 17 17 C 1.36934 * 125.65057 * 203.39869 * 16 15 13 18 18 H 1.07997 * 120.00069 * 326.41977 * 17 16 15 19 19 C 1.38816 * 120.00296 * 146.43051 * 17 16 15 20 20 N 1.31618 * 120.00072 * 155.14477 * 19 17 16 21 21 Si 1.86796 * 119.99711 * 335.14158 * 19 17 16 22 22 H 1.48512 * 109.47265 * 84.07247 * 21 19 17 23 23 H 1.48500 * 109.47294 * 204.06853 * 21 19 17 24 24 H 1.48504 * 109.47655 * 324.07280 * 21 19 17 25 25 C 1.47179 * 108.70174 * 23.34655 * 16 15 13 26 26 C 1.53996 * 113.94762 * 308.69389 * 13 12 11 27 27 H 1.08995 * 112.20288 * 280.65320 * 26 13 12 28 28 C 1.52592 * 109.67569 * 156.05401 * 9 8 6 29 29 C 1.52988 * 117.49912 * 133.26084 * 5 3 2 30 30 C 1.52992 * 60.00216 * 252.51190 * 29 5 3 31 31 H 1.09000 * 109.46866 * 179.72619 * 1 2 3 32 32 H 1.09002 * 109.46973 * 299.72313 * 1 2 3 33 33 H 1.09002 * 109.47121 * 59.72263 * 1 2 3 34 34 H 0.96997 * 120.00236 * 180.27859 * 2 1 3 35 35 H 0.97004 * 120.00043 * 354.66876 * 8 6 5 36 36 H 1.08994 * 109.74476 * 295.79688 * 11 9 8 37 37 H 1.09000 * 109.73880 * 56.50400 * 11 9 8 38 38 H 1.08994 * 109.02695 * 179.50514 * 12 11 9 39 39 H 1.09008 * 109.02152 * 298.40940 * 12 11 9 40 40 H 1.09001 * 110.51053 * 317.16316 * 15 13 12 41 41 H 1.09002 * 110.51420 * 79.87793 * 15 13 12 42 42 H 0.96999 * 119.99767 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.96259 * 241.59001 * 25 16 15 44 44 H 1.08993 * 109.96185 * 120.34033 * 25 16 15 45 45 H 1.09005 * 109.16100 * 302.49045 * 28 9 8 46 46 H 1.09007 * 109.16021 * 61.67207 * 28 9 8 47 47 H 1.08998 * 117.50267 * 0.02562 * 29 5 3 48 48 H 1.09000 * 117.49854 * 145.02274 * 29 5 3 49 49 H 1.09007 * 117.50120 * 252.51234 * 30 29 5 50 50 H 1.09002 * 117.50231 * 107.49001 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5352 2.2160 -0.0819 5 6 3.6425 1.1693 0.1017 6 6 4.2000 1.0105 1.4927 7 8 4.8936 0.0528 1.7625 8 7 3.9280 1.9329 2.4371 9 6 4.3708 1.7207 3.8174 10 1 5.3359 1.2141 3.8194 11 6 3.3388 0.8684 4.5653 12 6 3.8803 0.5887 5.9668 13 6 4.1435 1.8626 6.7283 14 1 4.6297 1.6226 7.6739 15 6 2.8626 2.6633 7.0229 16 7 3.3524 4.0228 7.3343 17 6 2.6862 4.9605 8.0772 18 1 1.6079 5.0107 8.0422 19 6 3.3967 5.8466 8.8754 20 7 2.8730 7.0117 9.1926 21 14 5.0959 5.3853 9.4990 22 1 6.1078 5.7022 8.4592 23 1 5.3963 6.1554 10.7328 24 1 5.1349 3.9318 9.8010 25 6 4.6753 4.2012 6.7145 26 6 5.0042 2.8832 5.9608 27 1 6.0655 2.6378 5.9981 28 6 4.4935 3.0644 4.5299 29 6 4.4152 2.0610 -0.8721 30 6 4.4293 0.5416 -1.0506 31 1 -0.3633 -1.0277 -0.0049 32 1 -0.3633 0.5095 0.8925 33 1 -0.3633 0.5181 -0.8875 34 1 1.9500 -0.8400 -0.0041 35 1 3.4390 2.7372 2.2028 36 1 2.3958 1.4104 4.6366 37 1 3.1846 -0.0718 4.0359 38 1 3.1534 -0.0098 6.5157 39 1 4.8111 0.0276 5.8826 40 1 2.2141 2.6824 6.1470 41 1 2.3368 2.2413 7.8794 42 1 3.3696 7.6310 9.7500 43 1 5.4248 4.3867 7.4840 44 1 4.6481 5.0345 6.0125 45 1 5.1883 3.6990 3.9797 46 1 3.5158 3.5455 4.5571 47 1 3.8361 2.6466 -1.5861 48 1 5.3271 2.5333 -0.5067 49 1 5.3505 0.0142 -0.8026 50 1 3.8594 0.1272 -1.8822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725335480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:28 Heat of formation + Delta-G solvation = -25.857902 kcal Electronic energy + Delta-G solvation = -30226.904453 eV Core-core repulsion = 26255.162530 eV Total energy + Delta-G solvation = -3971.741922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04549 -39.90568 -38.92509 -36.55906 -35.57844 -34.97021 -33.62685 -31.93256 -30.99144 -29.32057 -27.91269 -26.71165 -25.15906 -24.71887 -22.89456 -22.37058 -22.06878 -21.15074 -20.47548 -19.98873 -18.90469 -18.02849 -16.85114 -16.54133 -16.37814 -16.14054 -15.72859 -15.49506 -15.25531 -14.97149 -14.68274 -14.27748 -13.83853 -13.59435 -13.47188 -13.44265 -13.13255 -12.96879 -12.72932 -12.67784 -12.28010 -12.07135 -11.94916 -11.80163 -11.56785 -11.51497 -11.33099 -11.11662 -10.96878 -10.68466 -10.60223 -10.44626 -10.36526 -10.06570 -9.95304 -9.85737 -9.71385 -9.54725 -9.48986 -9.05833 -8.42450 -6.80995 -6.00311 -3.35262 1.97999 2.33718 2.65896 2.84573 3.34926 3.35881 3.47756 3.53584 4.18057 4.28240 4.35789 4.46467 4.55749 4.75813 4.82526 4.84958 5.01538 5.07383 5.11996 5.14064 5.21656 5.27271 5.35856 5.38242 5.41557 5.44056 5.49822 5.63148 5.64218 5.67452 5.69382 5.85946 5.94275 6.08287 6.08948 6.11988 6.27381 6.32415 6.35031 6.41778 6.59978 6.64280 6.77445 6.85699 6.89882 7.00040 7.33629 7.75688 7.90274 7.98128 8.34113 8.87644 9.68620 10.27359 11.16309 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.002844 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.498378 B = 9843.233107 C =10091.622214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.727 5.727 3 C 0.557 3.443 4 O -0.523 6.523 5 C -0.199 4.199 6 C 0.560 3.440 7 O -0.532 6.532 8 N -0.713 5.713 9 C 0.145 3.855 10 H 0.089 0.911 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.104 4.104 14 H 0.070 0.930 15 C 0.134 3.866 16 N -0.607 5.607 17 C -0.248 4.248 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.899 5.899 21 Si 0.878 3.122 22 H -0.281 1.281 23 H -0.302 1.302 24 H -0.275 1.275 25 C 0.124 3.876 26 C -0.090 4.090 27 H 0.080 0.920 28 C -0.116 4.116 29 C -0.127 4.127 30 C -0.133 4.133 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.405 0.595 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.045 0.955 42 H 0.264 0.736 43 H 0.026 0.974 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.116 0.884 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -16.882 -21.276 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.341 3.659 4 O -0.398 6.398 5 C -0.205 4.205 6 C 0.344 3.656 7 O -0.408 6.408 8 N -0.362 5.362 9 C 0.042 3.958 10 H 0.107 0.893 11 C -0.164 4.164 12 C -0.137 4.137 13 C -0.123 4.123 14 H 0.089 0.911 15 C 0.009 3.991 16 N -0.334 5.334 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.166 4.166 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.209 1.209 23 H -0.230 1.230 24 H -0.201 1.201 25 C -0.001 4.001 26 C -0.109 4.109 27 H 0.099 0.901 28 C -0.154 4.154 29 C -0.165 4.165 30 C -0.171 4.171 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.240 0.760 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.134 0.866 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.585 -16.567 -20.936 26.745 hybrid contribution 0.875 -0.119 0.494 1.011 sum 2.459 -16.686 -20.442 26.502 Atomic orbital electron populations 1.21613 0.78887 1.02589 1.02694 1.45735 1.07987 1.08663 1.75469 1.19105 0.86887 0.83914 0.76011 1.90755 1.69337 1.31373 1.48292 1.21495 0.92649 1.13392 0.93003 1.18891 0.80004 0.82657 0.84046 1.90714 1.37964 1.31157 1.80979 1.46114 1.57797 1.23196 1.09132 1.21095 0.98487 0.97381 0.78886 0.89294 1.21945 0.99018 0.99560 0.95832 1.20826 1.00953 0.97167 0.94726 1.21535 0.98361 0.93965 0.98477 0.91114 1.21695 0.93713 0.85772 0.97878 1.44760 1.18494 1.10547 1.59593 1.18517 0.92128 1.07962 1.18950 0.90042 1.25374 0.97824 0.96072 0.97319 1.69890 1.39322 1.06211 1.38679 0.86980 0.85588 0.78649 0.77954 1.20874 1.23010 1.20062 1.21982 0.89081 0.94335 0.94710 1.22073 0.98664 0.96751 0.93443 0.90120 1.21787 1.03046 0.95217 0.95336 1.23074 1.00915 0.93780 0.98703 1.23104 1.01765 0.96304 0.95900 0.90354 0.91833 0.91926 0.76043 0.75975 0.91138 0.92127 0.91700 0.92165 0.95357 0.93634 0.92640 0.95647 0.94204 0.91691 0.90278 0.86983 0.87133 0.86609 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.71 59.85 0.64 1.21 16 2 N -0.73 -5.70 5.71 -67.07 -0.38 -6.08 16 3 C 0.56 5.85 6.97 -10.98 -0.08 5.78 16 4 O -0.52 -7.25 17.02 5.56 0.09 -7.15 16 5 C -0.20 -1.88 2.25 -156.82 -0.35 -2.23 16 6 C 0.56 6.65 7.06 -10.99 -0.08 6.58 16 7 O -0.53 -7.66 16.25 5.55 0.09 -7.57 16 8 N -0.71 -8.44 5.10 -53.84 -0.27 -8.72 16 9 C 0.15 1.87 2.47 -67.97 -0.17 1.70 16 10 H 0.09 1.22 7.53 -51.93 -0.39 0.83 16 11 C -0.13 -1.61 5.40 -26.65 -0.14 -1.76 16 12 C -0.10 -1.29 5.37 -27.95 -0.15 -1.44 16 13 C -0.10 -1.69 2.81 -90.76 -0.26 -1.95 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 15 C 0.13 2.64 6.19 -2.85 -0.02 2.62 16 16 N -0.61 -14.62 2.96 -169.61 -0.50 -15.13 16 17 C -0.25 -7.08 10.44 -15.06 -0.16 -7.24 16 18 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 19 C 0.03 1.02 5.39 -17.43 -0.09 0.93 16 20 N -0.90 -27.78 13.97 55.49 0.78 -27.01 16 21 Si 0.88 22.68 25.38 -169.99 -4.31 18.36 16 22 H -0.28 -7.02 6.44 56.52 0.36 -6.65 16 23 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.12 2.66 5.44 -2.43 -0.01 2.64 16 26 C -0.09 -1.47 3.61 -88.85 -0.32 -1.79 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 C -0.12 -1.66 4.10 -26.94 -0.11 -1.77 16 29 C -0.13 -0.97 9.87 -26.74 -0.26 -1.24 16 30 C -0.13 -0.92 9.75 -26.74 -0.26 -1.18 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.41 2.37 8.83 -40.82 -0.36 2.01 16 35 H 0.41 4.63 8.60 -40.82 -0.35 4.27 16 36 H 0.07 0.96 6.80 -51.93 -0.35 0.61 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.03 0.60 3.67 -51.93 -0.19 0.41 16 44 H 0.04 0.88 7.74 -51.93 -0.40 0.48 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.27 7.16 -51.93 -0.37 0.90 16 47 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.12 0.84 7.93 -51.92 -0.41 0.42 16 50 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -34.64 391.49 -8.68 -43.31 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.24 Total: 3.23 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.82 Total: 0.85 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.38 Total: -56.94 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.18 Total: -14.72 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.31 Total: 18.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.64 -8.68 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725335480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.457 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds