Wall clock time and date at job start Tue Mar 31 2020 18:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99965 * 2 1 4 4 O 1.21281 * 119.99829 * 355.53057 * 3 2 1 5 5 C 1.50703 * 120.00115 * 175.53098 * 3 2 1 6 6 C 1.50699 * 115.54669 * 278.97500 * 5 3 2 7 7 O 1.21285 * 120.00100 * 118.17289 * 6 5 3 8 8 N 1.34776 * 120.00104 * 298.16024 * 6 5 3 9 9 C 1.46502 * 120.00077 * 174.66063 * 8 6 5 10 10 H 1.08998 * 109.67501 * 35.51044 * 9 8 6 11 11 C 1.53327 * 109.67460 * 275.00211 * 9 8 6 12 12 C 1.52829 * 108.09264 * 176.14919 * 11 9 8 13 13 C 1.50732 * 111.74512 * 58.91351 * 12 11 9 14 14 H 1.09004 * 109.27012 * 186.23416 * 13 12 11 15 15 C 1.53907 * 113.02079 * 65.13226 * 13 12 11 16 16 N 1.47818 * 104.06274 * 198.52443 * 15 13 12 17 17 C 1.36934 * 125.65057 * 203.39869 * 16 15 13 18 18 H 1.07997 * 120.00069 * 326.41977 * 17 16 15 19 19 C 1.38816 * 120.00296 * 146.43051 * 17 16 15 20 20 N 1.31618 * 120.00072 * 155.14477 * 19 17 16 21 21 Si 1.86796 * 119.99711 * 335.14158 * 19 17 16 22 22 H 1.48512 * 109.47265 * 84.07247 * 21 19 17 23 23 H 1.48500 * 109.47294 * 204.06853 * 21 19 17 24 24 H 1.48504 * 109.47655 * 324.07280 * 21 19 17 25 25 C 1.47179 * 108.70174 * 23.34655 * 16 15 13 26 26 C 1.53996 * 113.94762 * 308.69389 * 13 12 11 27 27 H 1.08995 * 112.20288 * 280.65320 * 26 13 12 28 28 C 1.52592 * 109.67569 * 156.05401 * 9 8 6 29 29 C 1.52988 * 117.49912 * 133.26084 * 5 3 2 30 30 C 1.52992 * 60.00216 * 252.51190 * 29 5 3 31 31 H 1.09000 * 109.46866 * 179.72619 * 1 2 3 32 32 H 1.09002 * 109.46973 * 299.72313 * 1 2 3 33 33 H 1.09002 * 109.47121 * 59.72263 * 1 2 3 34 34 H 0.96997 * 120.00236 * 180.27859 * 2 1 3 35 35 H 0.97004 * 120.00043 * 354.66876 * 8 6 5 36 36 H 1.08994 * 109.74476 * 295.79688 * 11 9 8 37 37 H 1.09000 * 109.73880 * 56.50400 * 11 9 8 38 38 H 1.08994 * 109.02695 * 179.50514 * 12 11 9 39 39 H 1.09008 * 109.02152 * 298.40940 * 12 11 9 40 40 H 1.09001 * 110.51053 * 317.16316 * 15 13 12 41 41 H 1.09002 * 110.51420 * 79.87793 * 15 13 12 42 42 H 0.96999 * 119.99767 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.96259 * 241.59001 * 25 16 15 44 44 H 1.08993 * 109.96185 * 120.34033 * 25 16 15 45 45 H 1.09005 * 109.16100 * 302.49045 * 28 9 8 46 46 H 1.09007 * 109.16021 * 61.67207 * 28 9 8 47 47 H 1.08998 * 117.50267 * 0.02562 * 29 5 3 48 48 H 1.09000 * 117.49854 * 145.02274 * 29 5 3 49 49 H 1.09007 * 117.50120 * 252.51234 * 30 29 5 50 50 H 1.09002 * 117.50231 * 107.49001 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5352 2.2160 -0.0819 5 6 3.6425 1.1693 0.1017 6 6 4.2000 1.0105 1.4927 7 8 4.8936 0.0528 1.7625 8 7 3.9280 1.9329 2.4371 9 6 4.3708 1.7207 3.8174 10 1 5.3359 1.2141 3.8194 11 6 3.3388 0.8684 4.5653 12 6 3.8803 0.5887 5.9668 13 6 4.1435 1.8626 6.7283 14 1 4.6297 1.6226 7.6739 15 6 2.8626 2.6633 7.0229 16 7 3.3524 4.0228 7.3343 17 6 2.6862 4.9605 8.0772 18 1 1.6079 5.0107 8.0422 19 6 3.3967 5.8466 8.8754 20 7 2.8730 7.0117 9.1926 21 14 5.0959 5.3853 9.4990 22 1 6.1078 5.7022 8.4592 23 1 5.3963 6.1554 10.7328 24 1 5.1349 3.9318 9.8010 25 6 4.6753 4.2012 6.7145 26 6 5.0042 2.8832 5.9608 27 1 6.0655 2.6378 5.9981 28 6 4.4935 3.0644 4.5299 29 6 4.4152 2.0610 -0.8721 30 6 4.4293 0.5416 -1.0506 31 1 -0.3633 -1.0277 -0.0049 32 1 -0.3633 0.5095 0.8925 33 1 -0.3633 0.5181 -0.8875 34 1 1.9500 -0.8400 -0.0041 35 1 3.4390 2.7372 2.2028 36 1 2.3958 1.4104 4.6366 37 1 3.1846 -0.0718 4.0359 38 1 3.1534 -0.0098 6.5157 39 1 4.8111 0.0276 5.8826 40 1 2.2141 2.6824 6.1470 41 1 2.3368 2.2413 7.8794 42 1 3.3696 7.6310 9.7500 43 1 5.4248 4.3867 7.4840 44 1 4.6481 5.0345 6.0125 45 1 5.1883 3.6990 3.9797 46 1 3.5158 3.5455 4.5571 47 1 3.8361 2.6466 -1.5861 48 1 5.3271 2.5333 -0.5067 49 1 5.3505 0.0142 -0.8026 50 1 3.8594 0.1272 -1.8822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725335480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:26 Heat of formation + Delta-G solvation = -51.222835 kcal Electronic energy + Delta-G solvation = -30228.004359 eV Core-core repulsion = 26255.162530 eV Total energy + Delta-G solvation = -3972.841828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.91747 -41.07374 -39.96094 -37.46795 -36.74401 -35.70889 -35.10252 -33.74343 -32.37707 -30.79424 -28.60410 -28.13068 -26.75753 -25.75082 -23.57145 -23.43921 -23.19718 -22.41410 -21.89551 -20.91970 -19.95147 -19.15585 -18.75983 -17.48878 -17.35663 -17.18233 -17.04529 -16.67130 -16.19842 -15.97036 -15.61606 -15.53521 -15.17051 -15.02244 -14.97046 -14.58938 -14.24220 -14.08849 -13.85488 -13.67268 -13.64608 -13.34203 -13.16607 -12.94714 -12.81217 -12.66372 -12.61041 -12.30510 -12.26640 -12.18284 -11.92092 -11.79910 -11.69601 -11.36654 -11.26271 -11.14132 -11.09319 -10.77199 -10.59036 -10.23838 -10.08187 -8.82627 -8.26647 -5.58170 1.14361 1.28010 1.36221 1.47839 1.49642 1.98085 2.04392 2.39217 2.67285 2.96629 3.37461 3.50712 3.52881 3.55797 3.68052 3.73612 3.78012 3.90257 4.05211 4.13044 4.22842 4.39982 4.40563 4.47650 4.53701 4.57630 4.58980 4.62132 4.64856 4.65814 4.80052 4.85609 4.90497 4.91273 4.95936 5.01323 5.07343 5.10163 5.18265 5.24027 5.30294 5.34471 5.41034 5.49604 5.50629 5.80104 6.10115 6.34050 6.41521 6.79402 7.02958 7.07614 7.50418 8.16631 8.94485 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.002844 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.498378 B = 9843.233107 C =10091.622214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.555 3.445 4 O -0.564 6.564 5 C -0.213 4.213 6 C 0.563 3.437 7 O -0.555 6.555 8 N -0.712 5.712 9 C 0.154 3.846 10 H 0.091 0.909 11 C -0.120 4.120 12 C -0.091 4.091 13 C -0.091 4.091 14 H 0.067 0.933 15 C 0.131 3.869 16 N -0.624 5.624 17 C -0.246 4.246 18 H 0.044 0.956 19 C -0.020 4.020 20 N -0.947 5.947 21 Si 0.943 3.057 22 H -0.266 1.266 23 H -0.305 1.305 24 H -0.268 1.268 25 C 0.116 3.884 26 C -0.078 4.078 27 H 0.109 0.891 28 C -0.108 4.108 29 C -0.125 4.125 30 C -0.112 4.112 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.417 0.583 35 H 0.407 0.593 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.265 0.735 43 H 0.014 0.986 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -19.772 -23.036 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.339 3.661 4 O -0.443 6.443 5 C -0.220 4.220 6 C 0.349 3.651 7 O -0.434 6.434 8 N -0.361 5.361 9 C 0.050 3.950 10 H 0.109 0.891 11 C -0.158 4.158 12 C -0.129 4.129 13 C -0.110 4.110 14 H 0.086 0.914 15 C 0.007 3.993 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.062 0.938 19 C -0.217 4.217 20 N -0.591 5.591 21 Si 0.772 3.228 22 H -0.193 1.193 23 H -0.233 1.233 24 H -0.193 1.193 25 C -0.008 4.008 26 C -0.097 4.097 27 H 0.127 0.873 28 C -0.146 4.146 29 C -0.162 4.162 30 C -0.149 4.149 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.242 0.758 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.135 0.865 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.516 -19.525 -22.726 30.167 hybrid contribution 0.144 0.771 0.970 1.248 sum 3.660 -18.754 -21.755 28.955 Atomic orbital electron populations 1.21741 0.78144 1.04525 1.01707 1.45747 1.08581 1.08500 1.73901 1.19302 0.87302 0.83936 0.75511 1.90736 1.70180 1.32862 1.50477 1.21388 0.92160 1.16108 0.92302 1.19162 0.79363 0.81943 0.84651 1.90698 1.39129 1.31976 1.81559 1.46102 1.57684 1.23450 1.08901 1.20918 0.98605 0.96150 0.79304 0.89055 1.21886 0.98428 0.99633 0.95872 1.20777 1.02373 0.95481 0.94265 1.21457 0.95843 0.94785 0.98960 0.91433 1.21820 0.95691 0.84201 0.97630 1.44862 1.19326 1.11728 1.59186 1.18417 0.91037 1.08846 1.19201 0.93841 1.25971 1.02028 0.95815 0.97911 1.70008 1.41448 1.07410 1.40244 0.85917 0.81270 0.78322 0.77280 1.19257 1.23339 1.19344 1.22104 0.87245 0.97037 0.94436 1.22093 1.00369 0.93568 0.93643 0.87296 1.21649 1.02026 0.96289 0.94592 1.23173 1.00642 0.94538 0.97895 1.23229 1.01228 0.95697 0.94790 0.86979 0.93449 0.92305 0.74681 0.75790 0.92329 0.91489 0.90580 0.90096 0.94802 0.94464 0.92636 0.96872 0.95437 0.90536 0.92477 0.86708 0.86657 0.86503 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.71 127.77 1.37 2.33 16 2 N -0.72 -9.92 5.71 -484.51 -2.77 -12.69 16 3 C 0.55 10.98 6.97 87.66 0.61 11.59 16 4 O -0.56 -15.51 17.02 -3.03 -0.05 -15.56 16 5 C -0.21 -3.64 2.25 -53.68 -0.12 -3.76 16 6 C 0.56 12.27 7.06 87.66 0.62 12.89 16 7 O -0.56 -14.63 16.25 -3.05 -0.05 -14.68 16 8 N -0.71 -15.70 5.10 -442.65 -2.26 -17.96 16 9 C 0.15 3.60 2.47 44.97 0.11 3.71 16 10 H 0.09 2.18 7.53 -2.39 -0.02 2.17 16 11 C -0.12 -2.79 5.40 30.65 0.17 -2.63 16 12 C -0.09 -2.09 5.37 29.80 0.16 -1.93 16 13 C -0.09 -2.75 2.81 -10.89 -0.03 -2.78 16 14 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 15 C 0.13 5.09 6.19 86.43 0.53 5.62 16 16 N -0.62 -30.34 2.96 -690.52 -2.04 -32.38 16 17 C -0.25 -14.54 10.44 84.03 0.88 -13.66 16 18 H 0.04 2.83 8.06 -2.91 -0.02 2.80 16 19 C -0.02 -1.23 5.39 84.86 0.46 -0.77 16 20 N -0.95 -60.49 13.97 21.65 0.30 -60.19 16 21 Si 0.94 47.43 25.38 68.60 1.74 49.17 16 22 H -0.27 -12.60 6.44 99.48 0.64 -11.96 16 23 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 24 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 25 C 0.12 4.89 5.44 87.06 0.47 5.36 16 26 C -0.08 -2.35 3.61 -9.65 -0.03 -2.38 16 27 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 28 C -0.11 -2.88 4.10 30.46 0.12 -2.75 16 29 C -0.12 -1.67 9.87 30.59 0.30 -1.36 16 30 C -0.11 -1.25 9.75 30.59 0.30 -0.95 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.42 3.81 8.83 -92.71 -0.82 2.99 16 35 H 0.41 8.92 8.60 -92.71 -0.80 8.12 16 36 H 0.06 1.52 6.80 -2.39 -0.02 1.50 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.03 1.29 6.15 -2.39 -0.01 1.28 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 43 H 0.01 0.61 3.67 -2.39 -0.01 0.60 16 44 H 0.03 1.21 7.74 -2.39 -0.02 1.19 16 45 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.06 1.80 7.16 -2.38 -0.02 1.78 16 47 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.12 1.35 7.93 -2.38 -0.02 1.33 16 50 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.27 391.49 0.07 -77.20 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.72 Total: 18.57 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.92 Total: 8.52 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.76 Total: -123.22 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.10 Total: -30.24 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.74 Total: 49.17 kcal Total: -77.27 0.07 -77.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725335480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.973 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds