Wall clock time and date at job start Tue Mar 31 2020 18:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99757 * 2 1 4 4 O 1.21278 * 120.00213 * 354.93774 * 3 2 1 5 5 C 1.50698 * 119.99994 * 174.93200 * 3 2 1 6 6 C 1.50701 * 115.55060 * 294.15281 * 5 3 2 7 7 O 1.21279 * 120.00276 * 122.13627 * 6 5 3 8 8 N 1.34778 * 119.99746 * 302.13252 * 6 5 3 9 9 C 1.46501 * 119.99488 * 175.00031 * 8 6 5 10 10 H 1.08989 * 109.02501 * 33.94173 * 9 8 6 11 11 C 1.52524 * 109.03623 * 274.99899 * 9 8 6 12 12 C 1.53840 * 111.65987 * 293.55580 * 11 9 8 13 13 C 1.51448 * 107.04250 * 302.79739 * 12 11 9 14 14 H 1.09003 * 109.86755 * 305.81494 * 13 12 11 15 15 C 1.52323 * 117.45355 * 178.77434 * 13 12 11 16 16 N 1.48645 * 105.91521 * 214.68657 * 15 13 12 17 17 C 1.36937 * 125.99576 * 183.17306 * 16 15 13 18 18 H 1.08001 * 119.99845 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00065 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00020 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00163 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47227 * 89.99680 * 21 19 17 23 23 H 1.48501 * 109.47015 * 210.00136 * 21 19 17 24 24 H 1.48503 * 109.46781 * 329.99700 * 21 19 17 25 25 C 1.48653 * 108.22022 * 3.16848 * 16 15 13 26 26 C 1.53065 * 103.58777 * 24.41126 * 25 16 15 27 27 H 1.09001 * 110.55404 * 75.58225 * 26 25 16 28 28 C 1.51614 * 116.68195 * 202.96153 * 26 25 16 29 29 C 1.53001 * 117.49842 * 79.81689 * 5 3 2 30 30 C 1.52997 * 117.49979 * 148.47655 * 5 3 2 31 31 H 1.08997 * 109.47101 * 299.99493 * 1 2 3 32 32 H 1.09001 * 109.47336 * 59.99802 * 1 2 3 33 33 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 34 34 H 0.97003 * 120.00323 * 180.02562 * 2 1 3 35 35 H 0.96996 * 120.00005 * 355.00317 * 8 6 5 36 36 H 1.09005 * 109.04592 * 172.99133 * 11 9 8 37 37 H 1.08995 * 109.04279 * 54.11277 * 11 9 8 38 38 H 1.09005 * 109.94051 * 183.41945 * 12 11 9 39 39 H 1.09000 * 109.94524 * 62.18107 * 12 11 9 40 40 H 1.08998 * 110.17249 * 333.77928 * 15 13 12 41 41 H 1.09008 * 110.16984 * 95.50376 * 15 13 12 42 42 H 0.96999 * 120.00470 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.62765 * 265.84717 * 25 16 15 44 44 H 1.08996 * 110.63135 * 142.98160 * 25 16 15 45 45 H 1.09000 * 109.94249 * 295.63565 * 28 26 25 46 46 H 1.08999 * 109.94273 * 56.87362 * 28 26 25 47 47 H 1.08996 * 117.50125 * 215.00731 * 29 5 3 48 48 H 1.09007 * 117.49880 * 0.02562 * 29 5 3 49 49 H 1.08999 * 117.49873 * 359.97438 * 30 5 3 50 50 H 1.09000 * 117.49871 * 144.97871 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5360 2.2155 -0.0927 5 6 3.6414 1.1699 0.1153 6 6 4.1937 0.6700 1.4253 7 8 4.9619 -0.2682 1.4411 8 7 3.8338 1.2658 2.5795 9 6 4.2826 0.7132 3.8599 10 1 5.2773 0.2861 3.7335 11 6 3.3195 -0.3880 4.2914 12 6 1.9244 0.1730 4.6164 13 6 2.1071 1.2190 5.6962 14 1 2.6437 0.7887 6.5418 15 6 0.8634 1.9537 6.1799 16 7 1.3032 3.3394 6.4895 17 6 0.5214 4.3336 7.0144 18 1 0.9429 5.3102 7.2014 19 6 -0.8133 4.0865 7.3050 20 7 -1.3272 2.8965 7.0767 21 14 -1.8801 5.4429 8.0203 22 1 -2.5188 6.2042 6.9168 23 1 -2.9312 4.8438 8.8815 24 1 -1.0384 6.3588 8.8313 25 6 2.7408 3.4618 6.1313 26 6 2.9412 2.3751 5.0722 27 1 2.5146 2.6866 4.1187 28 6 4.3559 1.8648 4.8796 29 6 4.4476 0.8724 -1.1506 30 6 4.4020 2.2955 -0.5885 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.9500 -0.8400 -0.0004 35 1 3.2777 2.0603 2.5623 36 1 3.7188 -0.8831 5.1767 37 1 3.2306 -1.1181 3.4870 38 1 1.2775 -0.6261 4.9787 39 1 1.4905 0.6292 3.7266 40 1 0.1059 1.9666 5.3962 41 1 0.4686 1.4746 7.0759 42 1 -2.2599 2.7239 7.2794 43 1 3.3706 3.2718 7.0003 44 1 2.9502 4.4471 5.7149 45 1 4.9932 2.6672 4.5081 46 1 4.7462 1.4858 5.8241 47 1 5.3773 0.3152 -1.0359 48 1 3.8911 0.6752 -2.0670 49 1 3.8156 3.0339 -1.1354 50 1 5.3016 2.6748 -0.1038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725335482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:30 Heat of formation + Delta-G solvation = -46.001621 kcal Electronic energy + Delta-G solvation = -30823.876901 eV Core-core repulsion = 26851.261481 eV Total energy + Delta-G solvation = -3972.615420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98086 -40.96923 -39.82601 -37.47042 -36.74595 -35.71654 -34.76557 -33.47553 -32.06166 -30.58591 -28.66227 -27.89226 -26.95573 -25.57398 -23.60071 -23.45246 -22.99607 -21.97612 -21.49946 -21.03493 -20.19092 -19.43864 -18.77961 -17.27105 -17.19522 -17.02001 -16.80760 -16.36960 -16.16348 -15.82245 -15.69039 -15.41309 -15.35423 -14.77577 -14.67752 -14.45474 -14.12913 -13.89175 -13.70829 -13.65582 -13.41968 -13.19621 -13.01339 -12.85828 -12.66508 -12.62449 -12.51966 -12.43403 -12.20252 -12.01947 -11.92272 -11.76924 -11.66114 -11.42650 -11.23335 -11.00822 -10.84011 -10.79869 -10.70729 -10.25273 -10.05876 -8.89392 -7.84700 -5.19209 1.21461 1.43671 1.45086 1.45938 1.54252 2.00834 2.07097 2.48661 2.72636 3.33715 3.49188 3.55061 3.57730 3.62927 3.69787 3.75182 3.79549 3.81757 4.11439 4.32440 4.36929 4.44302 4.45620 4.54627 4.57181 4.58087 4.65721 4.69209 4.74250 4.83836 4.85040 4.89182 4.91458 4.98316 5.07310 5.10356 5.11865 5.15365 5.24359 5.28942 5.34192 5.46391 5.51464 5.54104 5.73320 5.79515 6.16990 6.33410 6.41865 7.03234 7.08067 7.08971 7.75339 8.43396 9.26223 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003467 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.924705 B = 8073.506387 C = 8866.910096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.716 5.716 3 C 0.552 3.448 4 O -0.566 6.566 5 C -0.216 4.216 6 C 0.564 3.436 7 O -0.555 6.555 8 N -0.712 5.712 9 C 0.152 3.848 10 H 0.097 0.903 11 C -0.115 4.115 12 C -0.089 4.089 13 C -0.104 4.104 14 H 0.075 0.925 15 C 0.199 3.801 16 N -0.634 5.634 17 C -0.241 4.241 18 H 0.081 0.919 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.136 3.864 26 C -0.090 4.090 27 H 0.057 0.943 28 C -0.099 4.099 29 C -0.107 4.107 30 C -0.124 4.124 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.044 0.956 40 H -0.003 1.003 41 H 0.009 0.991 42 H 0.245 0.755 43 H 0.032 0.968 44 H 0.040 0.960 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.111 0.889 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.754 -9.415 -16.008 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.337 3.663 4 O -0.445 6.445 5 C -0.223 4.223 6 C 0.349 3.651 7 O -0.433 6.433 8 N -0.362 5.362 9 C 0.049 3.951 10 H 0.115 0.885 11 C -0.153 4.153 12 C -0.127 4.127 13 C -0.123 4.123 14 H 0.093 0.907 15 C 0.075 3.925 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.099 0.901 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.804 3.196 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.192 1.192 25 C 0.011 3.989 26 C -0.110 4.110 27 H 0.076 0.924 28 C -0.137 4.137 29 C -0.145 4.145 30 C -0.161 4.161 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.252 0.748 35 H 0.238 0.762 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.028 0.972 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.129 0.871 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.633 -9.323 -15.926 22.943 hybrid contribution -1.624 0.817 0.728 1.959 sum 12.008 -8.506 -15.197 21.154 Atomic orbital electron populations 1.21697 0.78420 1.04398 1.01480 1.45705 1.08388 1.08512 1.74056 1.19406 0.87597 0.83786 0.75477 1.90742 1.70266 1.32939 1.50557 1.21465 0.91801 1.13326 0.95681 1.19096 0.80096 0.81981 0.83942 1.90685 1.36232 1.29125 1.87285 1.46331 1.53013 1.31136 1.05753 1.21198 0.98559 0.93720 0.81655 0.88455 1.21841 0.94044 0.97291 1.02134 1.21126 0.97395 0.97403 0.96781 1.21952 0.96785 0.95623 0.97944 0.90684 1.20561 0.92454 0.83708 0.95786 1.45524 1.06704 1.09177 1.74666 1.19486 0.91880 0.91987 1.33618 0.90088 1.25621 0.98296 0.99263 1.02900 1.70187 1.12922 1.21897 1.55098 0.85111 0.78401 0.78323 0.77726 1.21524 1.22029 1.19248 1.21509 0.84831 0.97146 0.95384 1.21895 0.96644 0.95154 0.97270 0.92431 1.21625 0.94877 0.97338 0.99899 1.23197 1.00832 0.97966 0.92474 1.23173 1.00674 0.92033 1.00248 0.94087 0.92194 0.87030 0.74847 0.76202 0.89419 0.91733 0.92032 0.93762 0.98514 0.97231 0.94598 0.94981 0.94151 0.89436 0.88676 0.86014 0.86006 0.87100 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.71 127.77 1.37 2.89 16 2 N -0.72 -13.68 5.71 -484.53 -2.77 -16.45 16 3 C 0.55 13.43 7.05 87.66 0.62 14.05 16 4 O -0.57 -18.53 16.71 -3.02 -0.05 -18.58 16 5 C -0.22 -4.34 2.29 -53.67 -0.12 -4.46 16 6 C 0.56 12.88 7.07 87.66 0.62 13.50 16 7 O -0.55 -14.66 16.12 -3.03 -0.05 -14.71 16 8 N -0.71 -16.37 4.62 -441.70 -2.04 -18.41 16 9 C 0.15 3.32 2.75 45.17 0.12 3.44 16 10 H 0.10 2.04 7.45 -2.39 -0.02 2.02 16 11 C -0.11 -2.63 5.44 30.72 0.17 -2.46 16 12 C -0.09 -2.64 5.57 30.37 0.17 -2.47 16 13 C -0.10 -3.70 2.32 -10.62 -0.02 -3.72 16 14 H 0.07 2.54 7.99 -2.39 -0.02 2.52 16 15 C 0.20 10.03 5.09 85.74 0.44 10.46 16 16 N -0.63 -33.31 3.46 -692.02 -2.40 -35.71 16 17 C -0.24 -13.90 10.30 84.03 0.87 -13.03 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 20 N -0.95 -58.92 10.40 21.65 0.23 -58.69 16 21 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.14 5.44 6.88 85.99 0.59 6.03 16 26 C -0.09 -2.89 2.33 -10.32 -0.02 -2.91 16 27 H 0.06 2.00 6.29 -2.39 -0.02 1.98 16 28 C -0.10 -2.23 5.40 30.47 0.16 -2.06 16 29 C -0.11 -1.51 9.75 30.62 0.30 -1.22 16 30 C -0.12 -2.03 9.76 30.62 0.30 -1.73 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.42 5.97 8.83 -92.71 -0.82 5.15 16 35 H 0.40 10.18 6.82 -92.71 -0.63 9.54 16 36 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 37 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 38 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.04 1.44 7.91 -2.39 -0.02 1.42 16 40 H 0.00 -0.19 7.61 -2.39 -0.02 -0.21 16 41 H 0.01 0.54 7.32 -2.38 -0.02 0.52 16 42 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 1.92 8.04 -2.39 -0.02 1.90 16 47 H 0.12 1.64 7.87 -2.39 -0.02 1.62 16 48 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.11 1.92 8.00 -2.39 -0.02 1.90 16 50 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.53 395.92 0.47 -76.06 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.50 Total: 24.60 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.02 Total: 12.79 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -6.98 Total: -129.26 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.10 Total: -33.29 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.53 0.47 -76.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725335482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.061 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds