Wall clock time and date at job start Tue Mar 31 2020 18:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00290 * 2 1 4 4 O 1.21282 * 120.00253 * 354.90341 * 3 2 1 5 5 C 1.50699 * 119.99736 * 174.88712 * 3 2 1 6 6 C 1.50702 * 115.54536 * 65.47551 * 5 3 2 7 7 O 1.21281 * 119.99977 * 220.00894 * 6 5 3 8 8 N 1.34775 * 120.00095 * 40.00994 * 6 5 3 9 9 C 1.46503 * 119.99775 * 174.88995 * 8 6 5 10 10 H 1.08998 * 109.03210 * 33.95952 * 9 8 6 11 11 C 1.52530 * 109.04302 * 274.99900 * 9 8 6 12 12 C 1.53818 * 111.70035 * 185.46928 * 11 9 8 13 13 C 1.51613 * 107.02581 * 57.53603 * 12 11 9 14 14 H 1.09000 * 110.50803 * 55.19903 * 13 12 11 15 15 C 1.53056 * 117.49725 * 183.31491 * 13 12 11 16 16 N 1.48660 * 103.44690 * 156.24687 * 15 13 12 17 17 C 1.36943 * 125.78660 * 155.62069 * 16 15 13 18 18 H 1.07994 * 119.99992 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99835 * 0.02667 * 17 16 15 20 20 N 1.31618 * 120.00031 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46671 * 90.00264 * 21 19 17 23 23 H 1.48501 * 109.47070 * 209.99952 * 21 19 17 24 24 H 1.48499 * 109.46961 * 330.00594 * 21 19 17 25 25 C 1.48250 * 108.43077 * 335.62470 * 16 15 13 26 26 C 1.52324 * 105.86417 * 356.81223 * 25 16 15 27 27 H 1.08997 * 110.24353 * 272.17647 * 26 25 16 28 28 C 1.51441 * 117.45107 * 145.31690 * 26 25 16 29 29 C 1.52999 * 117.51775 * 211.16869 * 5 3 2 30 30 C 1.52995 * 117.50623 * 279.79942 * 5 3 2 31 31 H 1.09000 * 109.47538 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46483 * 299.99427 * 1 2 3 33 33 H 1.09004 * 109.47355 * 59.98881 * 1 2 3 34 34 H 0.97004 * 119.99687 * 180.02562 * 2 1 3 35 35 H 0.96996 * 119.99798 * 354.88780 * 8 6 5 36 36 H 1.08996 * 109.03411 * 64.89362 * 11 9 8 37 37 H 1.08997 * 108.97068 * 305.99573 * 11 9 8 38 38 H 1.09003 * 109.93888 * 298.15643 * 12 11 9 39 39 H 1.08997 * 110.01326 * 176.95915 * 12 11 9 40 40 H 1.09002 * 110.62860 * 274.73771 * 15 13 12 41 41 H 1.09004 * 110.62712 * 37.76404 * 15 13 12 42 42 H 0.96998 * 120.00421 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.16776 * 237.70957 * 25 16 15 44 44 H 1.08998 * 110.16728 * 115.91095 * 25 16 15 45 45 H 1.08998 * 109.93828 * 300.61099 * 28 26 25 46 46 H 1.08999 * 109.94084 * 61.84427 * 28 26 25 47 47 H 1.09005 * 117.50161 * 214.97780 * 29 5 3 48 48 H 1.09000 * 117.50220 * 359.97438 * 29 5 3 49 49 H 1.09007 * 117.49555 * 359.97438 * 30 5 3 50 50 H 1.08994 * 117.50085 * 144.97448 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5362 2.2155 -0.0933 5 6 3.6414 1.1696 0.1163 6 6 4.3838 0.5517 -1.0405 7 8 5.3594 -0.1391 -0.8355 8 7 3.9637 0.7667 -2.3029 9 6 4.7477 0.2603 -3.4321 10 1 5.2127 -0.6834 -3.1471 11 6 5.8391 1.2700 -3.7728 12 6 6.6155 0.8634 -5.0369 13 6 5.6028 0.7355 -6.1579 14 1 5.0315 1.6577 -6.2636 15 6 6.1131 0.2605 -7.5205 16 7 4.9009 -0.3112 -8.1636 17 6 4.6939 -0.4387 -9.5113 18 1 3.7738 -0.8692 -9.8779 19 6 5.6668 -0.0147 -10.4060 20 7 6.7883 0.5095 -9.9591 21 14 5.3848 -0.1893 -12.2443 22 1 4.7267 1.0369 -12.7627 23 1 6.6887 -0.3785 -12.9293 24 1 4.5148 -1.3647 -12.5022 25 6 3.9538 -0.7198 -7.0987 26 6 4.6679 -0.4500 -5.7805 27 1 5.2642 -1.3151 -5.4906 28 6 3.8233 0.0086 -4.6101 29 6 4.2941 2.3619 0.8186 30 6 4.2423 0.9996 1.5130 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 1.9500 -0.8401 -0.0004 35 1 3.1422 1.2568 -2.4638 36 1 6.5337 1.3387 -2.9357 37 1 5.3810 2.2455 -3.9354 38 1 7.1142 -0.0923 -4.8755 39 1 7.3506 1.6288 -5.2855 40 1 6.4961 1.0998 -8.1010 41 1 6.8797 -0.5047 -7.3980 42 1 7.4683 0.8055 -10.5842 43 1 3.7209 -1.7807 -7.1898 44 1 3.0411 -0.1273 -7.1599 45 1 3.3135 0.9387 -4.8614 46 1 3.0931 -0.7595 -4.3551 47 1 5.2605 2.6994 0.4440 48 1 3.6369 3.1451 1.1964 49 1 3.5508 0.8864 2.3480 50 1 5.1743 0.4405 1.5953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725335484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:33 Heat of formation + Delta-G solvation = -47.268909 kcal Electronic energy + Delta-G solvation = -29800.327620 eV Core-core repulsion = 25827.657247 eV Total energy + Delta-G solvation = -3972.670373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96209 -40.94399 -39.92315 -37.57721 -36.72981 -35.68368 -35.07537 -33.55965 -32.12303 -30.52983 -28.65111 -27.87946 -26.94478 -25.38631 -23.59457 -23.48014 -22.97265 -21.73276 -21.50008 -21.22839 -20.57251 -19.40514 -18.78137 -17.45840 -17.07787 -17.00087 -16.88522 -16.30022 -16.05634 -15.81752 -15.66040 -15.58290 -15.26730 -15.10726 -14.88764 -14.15005 -14.12609 -13.84538 -13.61983 -13.54817 -13.51206 -13.17307 -13.12976 -12.95881 -12.75068 -12.66681 -12.64092 -12.23364 -12.11723 -11.95127 -11.78522 -11.72250 -11.68107 -11.50109 -11.31820 -11.12683 -10.89526 -10.78226 -10.69730 -10.22952 -10.12626 -8.87895 -7.76184 -5.19994 1.29379 1.30391 1.45986 1.48079 1.56626 1.90321 2.01715 2.49718 2.75674 3.33538 3.48315 3.54959 3.58039 3.61818 3.64533 3.67602 3.78481 3.96795 4.08239 4.32542 4.39294 4.43601 4.46030 4.52726 4.58656 4.62347 4.65928 4.65980 4.70735 4.76045 4.84764 4.93935 4.95105 4.99122 5.03435 5.09397 5.11649 5.17583 5.24739 5.30904 5.35201 5.42479 5.46944 5.54623 5.74163 5.84002 6.29639 6.32130 6.39453 7.00249 7.07937 7.09826 7.76881 8.43697 9.26245 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002424 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.638978 B =11547.155167 C =12318.139476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.554 3.446 4 O -0.561 6.561 5 C -0.213 4.213 6 C 0.560 3.440 7 O -0.558 6.558 8 N -0.709 5.709 9 C 0.157 3.843 10 H 0.078 0.922 11 C -0.115 4.115 12 C -0.091 4.091 13 C -0.104 4.104 14 H 0.065 0.935 15 C 0.168 3.832 16 N -0.633 5.633 17 C -0.237 4.237 18 H 0.080 0.920 19 C -0.070 4.070 20 N -0.950 5.950 21 Si 0.980 3.020 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.140 3.860 26 C -0.088 4.088 27 H 0.069 0.931 28 C -0.095 4.095 29 C -0.119 4.119 30 C -0.110 4.110 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.414 0.586 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.068 0.932 41 H -0.014 1.014 42 H 0.246 0.754 43 H 0.026 0.974 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.126 0.874 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -0.005 26.175 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.339 3.661 4 O -0.440 6.440 5 C -0.220 4.220 6 C 0.346 3.654 7 O -0.436 6.436 8 N -0.359 5.359 9 C 0.053 3.947 10 H 0.097 0.903 11 C -0.153 4.153 12 C -0.130 4.130 13 C -0.123 4.123 14 H 0.083 0.917 15 C 0.043 3.957 16 N -0.359 5.359 17 C -0.366 4.366 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.196 1.196 25 C 0.016 3.984 26 C -0.107 4.107 27 H 0.087 0.913 28 C -0.134 4.134 29 C -0.156 4.156 30 C -0.148 4.148 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.250 0.750 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.004 0.996 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.130 0.870 48 H 0.136 0.864 49 H 0.144 0.856 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.471 0.253 26.067 27.736 hybrid contribution 0.023 -0.284 -1.638 1.662 sum -9.447 -0.031 24.430 26.193 Atomic orbital electron populations 1.21761 0.77877 1.04466 1.02005 1.45765 1.08733 1.08328 1.73876 1.19268 0.87191 0.83954 0.75715 1.90732 1.70147 1.32733 1.50346 1.21482 0.92325 1.11297 0.96852 1.19243 0.83639 0.79338 0.83199 1.90724 1.28560 1.39252 1.85093 1.46009 1.27550 1.57313 1.04987 1.20512 0.91619 0.97564 0.85037 0.90346 1.21799 0.97223 0.99166 0.97146 1.21165 0.97039 1.01742 0.93042 1.22170 0.97786 0.97590 0.94768 0.91660 1.21361 0.87421 0.96343 0.90539 1.45477 1.16913 1.72301 1.01228 1.19471 1.01579 1.33661 0.81890 0.90208 1.25632 0.96361 1.01815 1.02436 1.70079 1.08350 1.48372 1.33158 0.85055 0.76513 0.77932 0.79693 1.21206 1.22098 1.19554 1.21118 0.92706 0.96820 0.87784 1.21556 0.97489 0.98143 0.93528 0.91288 1.21057 0.97407 1.02401 0.92493 1.23124 1.01886 0.91386 0.99224 1.23192 1.03058 0.98801 0.89719 0.87364 0.92240 0.92773 0.75034 0.75754 0.91821 0.91354 0.92026 0.91440 0.91440 0.99596 0.94442 0.95578 0.95189 0.90794 0.89598 0.87048 0.86405 0.85620 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.71 127.77 1.37 2.12 16 2 N -0.72 -8.51 5.71 -484.51 -2.77 -11.28 16 3 C 0.55 9.65 6.37 87.66 0.56 10.21 16 4 O -0.56 -13.64 16.71 -3.04 -0.05 -13.69 16 5 C -0.21 -3.51 2.39 -53.68 -0.13 -3.64 16 6 C 0.56 11.72 7.28 87.66 0.64 12.36 16 7 O -0.56 -15.10 15.88 -3.03 -0.05 -15.15 16 8 N -0.71 -14.03 4.96 -445.08 -2.21 -16.24 16 9 C 0.16 3.64 2.45 44.46 0.11 3.75 16 10 H 0.08 2.04 7.45 -2.39 -0.02 2.03 16 11 C -0.11 -2.87 5.37 30.71 0.17 -2.71 16 12 C -0.09 -2.77 5.75 30.42 0.17 -2.59 16 13 C -0.10 -3.82 2.46 -10.33 -0.03 -3.85 16 14 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 15 C 0.17 8.40 5.56 85.98 0.48 8.88 16 16 N -0.63 -33.19 3.45 -693.07 -2.39 -35.58 16 17 C -0.24 -13.53 10.30 84.03 0.87 -12.66 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 20 N -0.95 -57.62 10.11 21.65 0.22 -57.40 16 21 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.14 5.73 6.98 85.82 0.60 6.33 16 26 C -0.09 -2.88 2.33 -10.62 -0.02 -2.91 16 27 H 0.07 2.31 7.95 -2.39 -0.02 2.29 16 28 C -0.10 -2.29 5.02 29.70 0.15 -2.14 16 29 C -0.12 -1.69 9.76 30.59 0.30 -1.39 16 30 C -0.11 -1.36 9.75 30.59 0.30 -1.06 16 31 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.41 3.57 8.83 -92.71 -0.82 2.76 16 35 H 0.41 7.27 8.00 -92.71 -0.74 6.53 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.89 7.99 -2.39 -0.02 1.88 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 3.87 5.93 -2.39 -0.01 3.86 16 41 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 45 H 0.07 1.73 8.04 -2.39 -0.02 1.72 16 46 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 47 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.12 1.62 8.00 -2.39 -0.02 1.60 16 49 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.12 1.56 7.68 -2.39 -0.02 1.54 16 Total: -1.00 -74.04 397.34 0.16 -73.88 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.61 Total: 19.96 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.99 Total: 7.13 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -7.15 Total: -120.50 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.10 Total: -28.84 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -74.04 0.16 -73.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725335484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.616 kcal (2) G-P(sol) polarization free energy of solvation -74.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds