Wall clock time and date at job start Tue Mar 31 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00150 * 2 1 4 4 C 1.46896 * 110.99778 * 123.95487 * 2 1 3 5 5 C 1.50703 * 109.47376 * 66.04490 * 4 2 1 6 6 C 1.38363 * 119.85612 * 89.99420 * 5 4 2 7 7 C 1.37953 * 120.14862 * 180.02562 * 6 5 4 8 8 C 1.39582 * 119.85227 * 359.97438 * 7 6 5 9 9 C 1.47840 * 120.14477 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00320 * 20.61551 * 9 8 7 11 11 N 1.34781 * 119.99777 * 200.62103 * 9 8 7 12 12 C 1.46499 * 120.00149 * 6.94424 * 11 9 8 13 13 C 1.46503 * 119.99706 * 186.94878 * 11 9 8 14 14 C 1.52999 * 109.46811 * 269.99567 * 13 11 9 15 15 H 1.08998 * 109.47487 * 304.99803 * 14 13 11 16 16 O 1.42905 * 109.47177 * 65.00469 * 14 13 11 17 17 C 1.53003 * 109.46846 * 185.00196 * 14 13 11 18 18 N 1.46503 * 109.47291 * 180.02562 * 17 14 13 19 19 C 1.36929 * 120.00503 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99593 * 359.72307 * 19 18 17 21 21 C 1.38805 * 120.00327 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00214 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47279 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47433 * 119.99972 * 23 21 19 26 26 H 1.48499 * 109.47169 * 240.00290 * 23 21 19 27 27 C 1.39579 * 119.71031 * 0.25483 * 8 7 6 28 28 C 1.37961 * 119.85005 * 359.51045 * 27 8 7 29 29 H 1.09010 * 109.46976 * 296.04619 * 1 2 3 30 30 H 1.09000 * 109.47277 * 56.04294 * 1 2 3 31 31 H 1.09000 * 109.47677 * 176.05018 * 1 2 3 32 32 H 1.08997 * 109.46774 * 183.95448 * 3 2 1 33 33 H 1.09002 * 109.47216 * 303.95468 * 3 2 1 34 34 H 1.08996 * 109.47117 * 63.95693 * 3 2 1 35 35 H 1.08997 * 109.47332 * 306.04218 * 4 2 1 36 36 H 1.09003 * 109.46879 * 186.03745 * 4 2 1 37 37 H 1.08005 * 119.92690 * 0.02610 * 6 5 4 38 38 H 1.08002 * 120.07766 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46901 * 265.82166 * 12 11 9 40 40 H 1.08997 * 109.47247 * 25.82368 * 12 11 9 41 41 H 1.09008 * 109.47036 * 145.82331 * 12 11 9 42 42 H 1.09006 * 109.47010 * 149.99633 * 13 11 9 43 43 H 1.08997 * 109.47176 * 29.99917 * 13 11 9 44 44 H 0.96701 * 113.99748 * 59.99694 * 16 14 13 45 45 H 1.08994 * 109.47632 * 59.99900 * 17 14 13 46 46 H 1.09000 * 109.47262 * 299.99977 * 17 14 13 47 47 H 0.97002 * 119.99749 * 359.97438 * 18 17 14 48 48 H 0.96996 * 120.00276 * 179.97438 * 22 21 19 49 49 H 1.07999 * 120.07761 * 179.72629 * 27 8 7 50 50 H 1.08000 * 119.92728 * 180.22843 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6368 -2.2205 0.9729 6 6 2.4967 -3.0699 0.2994 7 6 2.1743 -4.4022 0.1447 8 6 0.9777 -4.8930 0.6698 9 6 0.6255 -6.3196 0.5072 10 8 1.4931 -7.1364 0.2675 11 7 -0.6578 -6.7144 0.6247 12 6 -1.7217 -5.7166 0.7615 13 6 -0.9888 -8.1416 0.6158 14 6 -1.2486 -8.5957 -0.8220 15 1 -2.0201 -7.9679 -1.2676 16 8 -0.0440 -8.4823 -1.5824 17 6 -1.7152 -10.0529 -0.8200 18 7 -1.9634 -10.4881 -2.1967 19 6 -2.3914 -11.7649 -2.4446 20 1 -2.5417 -12.4526 -1.6255 21 6 -2.6270 -12.1771 -3.7490 22 7 -2.4386 -11.3407 -4.7477 23 14 -3.2116 -13.9187 -4.0871 24 1 -3.3444 -14.6542 -2.8038 25 1 -4.5286 -13.8748 -4.7716 26 1 -2.2257 -14.6121 -4.9546 27 6 0.1125 -4.0298 1.3439 28 6 0.4493 -2.7006 1.4958 29 1 -0.3633 0.4513 0.9234 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3431 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6612 1.1755 37 1 3.4225 -2.6889 -0.1061 38 1 2.8461 -5.0641 -0.3816 39 1 -1.9338 -5.5542 1.8183 40 1 -1.4012 -4.7792 0.3070 41 1 -2.6217 -6.0740 0.2610 42 1 -1.8819 -8.3112 1.2174 43 1 -0.1571 -8.7101 1.0318 44 1 0.6874 -9.0157 -1.2423 45 1 -2.6339 -10.1395 -0.2400 46 1 -0.9437 -10.6809 -0.3744 47 1 -1.8245 -9.8717 -2.9327 48 1 -2.6029 -11.6288 -5.6591 49 1 -0.8169 -4.4023 1.7487 50 1 -0.2176 -2.0323 2.0204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725707389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:12 Heat of formation + Delta-G solvation = -12.262530 kcal Electronic energy + Delta-G solvation = -28691.115284 eV Core-core repulsion = 24719.962901 eV Total energy + Delta-G solvation = -3971.152383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68110 -39.18927 -37.47191 -36.92607 -35.45781 -33.91727 -32.34239 -31.39717 -31.11799 -29.39246 -28.00410 -27.56635 -27.13251 -25.32858 -23.40127 -22.97893 -22.38393 -21.37445 -21.02843 -19.85321 -17.47039 -17.10608 -16.75521 -16.46179 -16.08145 -15.92545 -15.65746 -15.22955 -14.98504 -14.82262 -14.49177 -14.43919 -14.35268 -13.87478 -13.64937 -13.30314 -13.13218 -12.85950 -12.82631 -12.77398 -12.61973 -12.41730 -12.16919 -12.13011 -12.03462 -11.97907 -11.50137 -11.42910 -10.99397 -10.88945 -10.80105 -10.59259 -10.07909 -9.87642 -9.72372 -9.55695 -9.18334 -9.07239 -8.85747 -8.76736 -8.45846 -6.86817 -5.70307 -2.99629 0.65194 1.13941 2.73244 2.92242 3.46447 3.49247 3.51363 3.54171 3.81536 4.26929 4.43593 4.45675 4.61306 4.63983 4.73266 4.82267 4.88918 4.93189 4.93919 5.01819 5.03711 5.14171 5.16069 5.21416 5.24967 5.35517 5.36429 5.41785 5.51761 5.55220 5.57349 5.59298 5.69622 5.74692 5.79377 5.99742 6.06530 6.15101 6.25118 6.30070 6.47591 6.50468 6.54248 6.57403 6.66004 6.80145 7.33554 7.73341 8.18364 8.32211 8.48241 9.59237 10.18152 10.53966 11.52158 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.001936 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.195282 B =14456.670622 C =14719.589468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.090 3.910 5 C -0.060 4.060 6 C -0.107 4.107 7 C -0.059 4.059 8 C -0.127 4.127 9 C 0.560 3.440 10 O -0.524 6.524 11 N -0.605 5.605 12 C 0.064 3.936 13 C 0.087 3.913 14 C 0.086 3.914 15 H 0.094 0.906 16 O -0.544 6.544 17 C 0.125 3.875 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.111 4.111 28 C -0.126 4.126 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.374 0.626 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.150 0.850 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 26.965 17.315 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.061 4.061 6 C -0.126 4.126 7 C -0.078 4.078 8 C -0.130 4.130 9 C 0.349 3.651 10 O -0.401 6.401 11 N -0.338 5.338 12 C -0.079 4.079 13 C -0.036 4.036 14 C 0.025 3.975 15 H 0.112 0.888 16 O -0.349 6.349 17 C -0.004 4.004 18 N -0.370 5.370 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.221 0.779 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.224 0.776 48 H 0.064 0.936 49 H 0.167 0.833 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.587 26.542 16.430 31.903 hybrid contribution -0.464 -0.706 0.588 1.029 sum 6.123 25.836 17.018 31.537 Atomic orbital electron populations 1.22503 0.87042 1.02981 1.00413 1.61972 1.08430 1.13668 1.42464 1.22403 1.00895 0.88474 1.00634 1.21119 1.00713 0.89969 0.91871 1.19888 0.94532 0.94854 0.96809 1.20973 1.00035 0.92800 0.98780 1.21301 0.94969 0.95323 0.96168 1.19967 0.96706 0.93533 1.02778 1.18257 0.82241 0.87930 0.76661 1.90744 1.47997 1.54205 1.47119 1.47546 1.06206 1.07044 1.72996 1.22438 0.91401 0.93217 1.00820 1.22291 1.02197 0.80315 0.98836 1.22464 0.88141 0.97009 0.89856 0.88838 1.86556 1.21488 1.71197 1.55659 1.21241 0.97420 0.91937 0.89755 1.42250 1.80586 1.12838 1.01301 1.19270 1.36842 0.89033 0.92106 0.91233 1.24767 1.02571 0.98084 0.95624 1.69696 1.55199 1.34444 0.98439 0.86113 0.77977 0.84342 0.77720 1.20596 1.21891 1.21861 1.22234 0.99666 0.93380 0.97587 1.20982 0.96637 0.95576 1.01251 0.95630 0.91272 0.90655 0.91205 0.91099 0.95633 0.93730 0.89676 0.85375 0.84669 0.92143 0.89507 0.90844 0.89582 0.89515 0.77859 0.95862 0.96206 0.77649 0.93571 0.83284 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.13 60.06 0.55 0.67 16 2 N -0.54 -3.86 5.01 -252.72 -1.27 -5.13 16 3 C 0.02 0.13 9.57 60.06 0.57 0.70 16 4 C 0.09 0.59 5.11 -4.98 -0.03 0.57 16 5 C -0.06 -0.49 4.89 -104.53 -0.51 -1.00 16 6 C -0.11 -1.00 9.68 -39.64 -0.38 -1.38 16 7 C -0.06 -0.67 9.59 -39.18 -0.38 -1.05 16 8 C -0.13 -1.50 5.57 -104.97 -0.58 -2.08 16 9 C 0.56 8.07 7.23 -12.33 -0.09 7.98 16 10 O -0.52 -9.25 14.72 -9.09 -0.13 -9.38 16 11 N -0.61 -7.55 2.86 -182.69 -0.52 -8.07 16 12 C 0.06 0.55 8.65 59.85 0.52 1.07 16 13 C 0.09 1.16 5.12 -4.04 -0.02 1.14 16 14 C 0.09 1.49 3.30 -26.73 -0.09 1.40 16 15 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 16 O -0.54 -10.83 11.76 -49.64 -0.58 -11.41 16 17 C 0.13 2.56 5.92 -4.04 -0.02 2.54 16 18 N -0.72 -19.26 5.49 -59.91 -0.33 -19.59 16 19 C -0.24 -7.00 9.99 -15.07 -0.15 -7.15 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -29.27 13.06 55.49 0.72 -28.55 16 23 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 C -0.11 -0.98 7.61 -39.18 -0.30 -1.28 16 28 C -0.13 -0.97 7.94 -39.64 -0.31 -1.28 16 29 H 0.03 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 0.54 6.16 -51.93 -0.32 0.22 16 32 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 34 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.04 0.26 8.06 -51.93 -0.42 -0.16 16 36 H 0.08 0.49 8.00 -51.93 -0.42 0.08 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.14 1.63 7.79 -52.49 -0.41 1.22 16 39 H 0.06 0.37 7.04 -51.93 -0.37 0.00 16 40 H 0.09 0.71 5.20 -51.93 -0.27 0.44 16 41 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 42 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.09 1.22 7.53 -51.93 -0.39 0.83 16 44 H 0.37 7.00 8.59 45.56 0.39 7.39 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.39 11.19 7.54 -40.82 -0.31 10.88 16 48 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.15 1.02 4.05 -52.49 -0.21 0.81 16 50 H 0.12 0.68 8.03 -52.49 -0.42 0.26 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -35.86 402.01 -9.72 -45.58 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.33 Total: 12.20 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.32 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -1.39 Total: -61.33 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.72 Total: -20.79 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.86 -9.72 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725707389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.321 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds