Wall clock time and date at job start Tue Mar 31 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00150 * 2 1 4 4 C 1.46896 * 110.99778 * 123.95487 * 2 1 3 5 5 C 1.50703 * 109.47376 * 66.04490 * 4 2 1 6 6 C 1.38363 * 119.85612 * 89.99420 * 5 4 2 7 7 C 1.37953 * 120.14862 * 180.02562 * 6 5 4 8 8 C 1.39582 * 119.85227 * 359.97438 * 7 6 5 9 9 C 1.47840 * 120.14477 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00320 * 20.61551 * 9 8 7 11 11 N 1.34781 * 119.99777 * 200.62103 * 9 8 7 12 12 C 1.46499 * 120.00149 * 6.94424 * 11 9 8 13 13 C 1.46503 * 119.99706 * 186.94878 * 11 9 8 14 14 C 1.52999 * 109.46811 * 269.99567 * 13 11 9 15 15 H 1.08998 * 109.47487 * 304.99803 * 14 13 11 16 16 O 1.42905 * 109.47177 * 65.00469 * 14 13 11 17 17 C 1.53003 * 109.46846 * 185.00196 * 14 13 11 18 18 N 1.46503 * 109.47291 * 180.02562 * 17 14 13 19 19 C 1.36929 * 120.00503 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99593 * 359.72307 * 19 18 17 21 21 C 1.38805 * 120.00327 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00214 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47279 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47433 * 119.99972 * 23 21 19 26 26 H 1.48499 * 109.47169 * 240.00290 * 23 21 19 27 27 C 1.39579 * 119.71031 * 0.25483 * 8 7 6 28 28 C 1.37961 * 119.85005 * 359.51045 * 27 8 7 29 29 H 1.09010 * 109.46976 * 296.04619 * 1 2 3 30 30 H 1.09000 * 109.47277 * 56.04294 * 1 2 3 31 31 H 1.09000 * 109.47677 * 176.05018 * 1 2 3 32 32 H 1.08997 * 109.46774 * 183.95448 * 3 2 1 33 33 H 1.09002 * 109.47216 * 303.95468 * 3 2 1 34 34 H 1.08996 * 109.47117 * 63.95693 * 3 2 1 35 35 H 1.08997 * 109.47332 * 306.04218 * 4 2 1 36 36 H 1.09003 * 109.46879 * 186.03745 * 4 2 1 37 37 H 1.08005 * 119.92690 * 0.02610 * 6 5 4 38 38 H 1.08002 * 120.07766 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46901 * 265.82166 * 12 11 9 40 40 H 1.08997 * 109.47247 * 25.82368 * 12 11 9 41 41 H 1.09008 * 109.47036 * 145.82331 * 12 11 9 42 42 H 1.09006 * 109.47010 * 149.99633 * 13 11 9 43 43 H 1.08997 * 109.47176 * 29.99917 * 13 11 9 44 44 H 0.96701 * 113.99748 * 59.99694 * 16 14 13 45 45 H 1.08994 * 109.47632 * 59.99900 * 17 14 13 46 46 H 1.09000 * 109.47262 * 299.99977 * 17 14 13 47 47 H 0.97002 * 119.99749 * 359.97438 * 18 17 14 48 48 H 0.96996 * 120.00276 * 179.97438 * 22 21 19 49 49 H 1.07999 * 120.07761 * 179.72629 * 27 8 7 50 50 H 1.08000 * 119.92728 * 180.22843 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6368 -2.2205 0.9729 6 6 2.4967 -3.0699 0.2994 7 6 2.1743 -4.4022 0.1447 8 6 0.9777 -4.8930 0.6698 9 6 0.6255 -6.3196 0.5072 10 8 1.4931 -7.1364 0.2675 11 7 -0.6578 -6.7144 0.6247 12 6 -1.7217 -5.7166 0.7615 13 6 -0.9888 -8.1416 0.6158 14 6 -1.2486 -8.5957 -0.8220 15 1 -2.0201 -7.9679 -1.2676 16 8 -0.0440 -8.4823 -1.5824 17 6 -1.7152 -10.0529 -0.8200 18 7 -1.9634 -10.4881 -2.1967 19 6 -2.3914 -11.7649 -2.4446 20 1 -2.5417 -12.4526 -1.6255 21 6 -2.6270 -12.1771 -3.7490 22 7 -2.4386 -11.3407 -4.7477 23 14 -3.2116 -13.9187 -4.0871 24 1 -3.3444 -14.6542 -2.8038 25 1 -4.5286 -13.8748 -4.7716 26 1 -2.2257 -14.6121 -4.9546 27 6 0.1125 -4.0298 1.3439 28 6 0.4493 -2.7006 1.4958 29 1 -0.3633 0.4513 0.9234 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3431 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6612 1.1755 37 1 3.4225 -2.6889 -0.1061 38 1 2.8461 -5.0641 -0.3816 39 1 -1.9338 -5.5542 1.8183 40 1 -1.4012 -4.7792 0.3070 41 1 -2.6217 -6.0740 0.2610 42 1 -1.8819 -8.3112 1.2174 43 1 -0.1571 -8.7101 1.0318 44 1 0.6874 -9.0157 -1.2423 45 1 -2.6339 -10.1395 -0.2400 46 1 -0.9437 -10.6809 -0.3744 47 1 -1.8245 -9.8717 -2.9327 48 1 -2.6029 -11.6288 -5.6591 49 1 -0.8169 -4.4023 1.7487 50 1 -0.2176 -2.0323 2.0204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725707389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:11 Heat of formation + Delta-G solvation = -38.935963 kcal Electronic energy + Delta-G solvation = -28692.271931 eV Core-core repulsion = 24719.962901 eV Total energy + Delta-G solvation = -3972.309030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58133 -40.01255 -38.67549 -37.74296 -36.58625 -35.86932 -33.32631 -32.95013 -32.07705 -30.75386 -28.49135 -28.27689 -28.16046 -26.73456 -24.82258 -23.75525 -23.42731 -22.63084 -21.91957 -20.80217 -19.24136 -18.38991 -17.92239 -17.41491 -16.86504 -16.62469 -16.56104 -16.39307 -16.27282 -16.05914 -15.57750 -15.38201 -15.22788 -15.20483 -14.78546 -14.59784 -14.22518 -14.03018 -13.87700 -13.71447 -13.47643 -13.22136 -13.17867 -12.98416 -12.82656 -12.76736 -12.65381 -12.57026 -12.45554 -12.16994 -12.13371 -11.99811 -11.82141 -11.68858 -11.14046 -10.99607 -10.84133 -9.91435 -9.79613 -9.53736 -9.24504 -9.02383 -7.95504 -5.25796 -0.12889 0.43615 1.45584 1.47826 1.57784 1.78197 2.00041 2.54854 2.77601 3.25886 3.35739 3.45401 3.55225 3.77594 3.82211 3.83793 3.98345 4.07526 4.17335 4.23993 4.27867 4.33744 4.45130 4.45435 4.48537 4.51747 4.59728 4.61170 4.64536 4.73989 4.78060 4.79130 4.86480 4.90426 4.91858 5.06190 5.07550 5.08740 5.22995 5.31333 5.36566 5.45881 5.52254 5.57860 5.92818 6.06854 6.10793 6.25119 6.36407 6.82055 7.16387 7.31250 8.07880 8.30679 9.28296 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.001936 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.195282 B =14456.670622 C =14719.589468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.561 5.561 3 C 0.025 3.975 4 C 0.092 3.908 5 C -0.056 4.056 6 C -0.112 4.112 7 C -0.081 4.081 8 C -0.150 4.150 9 C 0.550 3.450 10 O -0.572 6.572 11 N -0.604 5.604 12 C 0.054 3.946 13 C 0.097 3.903 14 C 0.094 3.906 15 H 0.088 0.912 16 O -0.566 6.566 17 C 0.124 3.876 18 N -0.742 5.742 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.295 1.295 27 C -0.102 4.102 28 C -0.119 4.119 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.375 0.625 45 H 0.043 0.957 46 H 0.023 0.977 47 H 0.373 0.627 48 H 0.251 0.749 49 H 0.174 0.826 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 28.526 19.772 35.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.285 5.285 3 C -0.123 4.123 4 C -0.035 4.035 5 C -0.057 4.057 6 C -0.131 4.131 7 C -0.100 4.100 8 C -0.153 4.153 9 C 0.341 3.659 10 O -0.452 6.452 11 N -0.335 5.335 12 C -0.086 4.086 13 C -0.026 4.026 14 C 0.034 3.966 15 H 0.106 0.894 16 O -0.372 6.372 17 C -0.004 4.004 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.622 5.622 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.222 1.222 27 C -0.120 4.120 28 C -0.138 4.138 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.156 0.844 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.223 0.777 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.205 0.795 48 H 0.059 0.941 49 H 0.190 0.810 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.082 28.127 18.953 34.296 hybrid contribution 0.008 -1.075 -0.124 1.082 sum 5.089 27.052 18.829 33.351 Atomic orbital electron populations 1.22498 0.86755 1.02577 1.01117 1.61952 1.08927 1.14730 1.42914 1.22419 1.01110 0.87634 1.01139 1.21135 1.01312 0.88647 0.92367 1.20172 0.94285 0.95680 0.95514 1.21095 1.00868 0.92028 0.99094 1.21272 0.95216 0.96192 0.97292 1.19905 0.97814 0.92639 1.04951 1.18798 0.82445 0.88794 0.75908 1.90706 1.49443 1.55570 1.49469 1.47642 1.06566 1.07274 1.72026 1.22757 0.90202 0.92356 1.03333 1.22105 1.03343 0.81080 0.96104 1.22445 0.86947 0.95040 0.92215 0.89425 1.86528 1.22333 1.71356 1.56951 1.21449 0.98182 0.93860 0.86881 1.42478 1.80652 1.12033 1.03268 1.19730 1.35510 0.90106 0.92472 0.90265 1.25681 1.03649 1.02406 0.95555 1.69871 1.57132 1.36608 0.98613 0.84993 0.76965 0.79346 0.77942 1.18678 1.21792 1.22246 1.22461 0.99730 0.93383 0.96384 1.21323 0.96610 0.95415 1.00406 0.94349 0.91285 0.91460 0.90840 0.90978 0.94759 0.92247 0.89041 0.84423 0.86841 0.88523 0.89039 0.90264 0.86085 0.90385 0.77713 0.93882 0.95953 0.79495 0.94051 0.80955 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.13 127.69 1.17 1.36 16 2 N -0.56 -6.79 5.01 -953.48 -4.78 -11.56 16 3 C 0.02 0.21 9.57 127.69 1.22 1.43 16 4 C 0.09 0.98 5.11 85.56 0.44 1.41 16 5 C -0.06 -0.80 4.89 -19.81 -0.10 -0.90 16 6 C -0.11 -2.07 9.68 22.23 0.22 -1.85 16 7 C -0.08 -1.94 9.59 22.53 0.22 -1.73 16 8 C -0.15 -3.54 5.57 -20.09 -0.11 -3.65 16 9 C 0.55 16.13 7.23 86.78 0.63 16.76 16 10 O -0.57 -21.34 14.72 9.92 0.15 -21.19 16 11 N -0.60 -14.36 2.86 -850.19 -2.43 -16.78 16 12 C 0.05 0.78 8.65 127.77 1.11 1.88 16 13 C 0.10 2.48 5.12 86.38 0.44 2.92 16 14 C 0.09 3.24 3.30 30.59 0.10 3.34 16 15 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 16 O -0.57 -23.40 11.76 -135.20 -1.59 -24.99 16 17 C 0.12 4.99 5.92 86.38 0.51 5.51 16 18 N -0.74 -39.83 5.49 -343.46 -1.89 -41.72 16 19 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 22 N -0.97 -62.52 13.06 21.65 0.28 -62.24 16 23 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 C -0.10 -1.57 7.61 22.53 0.17 -1.40 16 28 C -0.12 -1.48 7.94 22.23 0.18 -1.30 16 29 H 0.04 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.07 0.80 6.16 -2.39 -0.01 0.78 16 32 H 0.07 0.55 8.12 -2.39 -0.02 0.54 16 33 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 34 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.06 0.47 8.06 -2.39 -0.02 0.45 16 36 H 0.09 0.85 8.00 -2.39 -0.02 0.83 16 37 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.11 3.10 7.79 -2.91 -0.02 3.08 16 39 H 0.10 0.73 7.04 -2.39 -0.02 0.71 16 40 H 0.09 1.25 5.20 -2.39 -0.01 1.24 16 41 H 0.08 1.08 8.10 -2.38 -0.02 1.06 16 42 H 0.12 2.25 8.07 -2.38 -0.02 2.23 16 43 H 0.08 2.17 7.53 -2.39 -0.02 2.15 16 44 H 0.38 14.88 8.59 -74.06 -0.64 14.24 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.37 22.10 7.54 -92.71 -0.70 21.40 16 48 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.17 1.72 4.05 -2.91 -0.01 1.71 16 50 H 0.15 1.01 8.03 -2.91 -0.02 0.98 16 Total: -1.00 -80.00 402.01 -1.12 -81.11 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.38 Total: 41.86 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 7.49 Total: 5.96 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -8.81 Total: -132.30 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.44 Total: -46.18 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -80.00 -1.12 -81.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725707389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.179 kcal (2) G-P(sol) polarization free energy of solvation -79.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds