Wall clock time and date at job start Tue Mar 31 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00019 * 2 1 4 4 C 1.46901 * 110.99767 * 123.94888 * 2 1 3 5 5 C 1.50700 * 109.47309 * 66.04991 * 4 2 1 6 6 C 1.38361 * 119.85305 * 89.99622 * 5 4 2 7 7 C 1.37962 * 120.14401 * 180.02562 * 6 5 4 8 8 C 1.39574 * 119.85215 * 359.97438 * 7 6 5 9 9 C 1.47847 * 120.14703 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99439 * 328.54269 * 9 8 7 11 11 N 1.34776 * 120.00466 * 148.53654 * 9 8 7 12 12 C 1.46500 * 119.99506 * 4.35132 * 11 9 8 13 13 C 1.46500 * 120.00390 * 184.35719 * 11 9 8 14 14 C 1.52998 * 109.47477 * 89.99663 * 13 11 9 15 15 H 1.09006 * 109.47107 * 60.00271 * 14 13 11 16 16 O 1.42902 * 109.46915 * 300.00475 * 14 13 11 17 17 C 1.52992 * 109.47244 * 180.02562 * 14 13 11 18 18 N 1.46499 * 109.47380 * 184.99988 * 17 14 13 19 19 C 1.36933 * 120.00202 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99988 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00154 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00058 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00334 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47151 * 59.99701 * 23 21 19 25 25 H 1.48492 * 109.47507 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46842 * 300.00344 * 23 21 19 27 27 C 1.39584 * 119.71382 * 0.24843 * 8 7 6 28 28 C 1.37959 * 119.84981 * 359.51964 * 27 8 7 29 29 H 1.08996 * 109.47468 * 296.04499 * 1 2 3 30 30 H 1.08997 * 109.47028 * 56.05372 * 1 2 3 31 31 H 1.09000 * 109.46820 * 176.04720 * 1 2 3 32 32 H 1.09001 * 109.47405 * 183.95051 * 3 2 1 33 33 H 1.08996 * 109.47149 * 303.95244 * 3 2 1 34 34 H 1.09005 * 109.47424 * 63.94591 * 3 2 1 35 35 H 1.09003 * 109.47269 * 306.05265 * 4 2 1 36 36 H 1.08996 * 109.47263 * 186.05179 * 4 2 1 37 37 H 1.07991 * 119.92858 * 0.02646 * 6 5 4 38 38 H 1.07995 * 120.07490 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47326 * 94.15620 * 12 11 9 40 40 H 1.09005 * 109.47266 * 214.15601 * 12 11 9 41 41 H 1.08996 * 109.47884 * 334.15536 * 12 11 9 42 42 H 1.08997 * 109.46918 * 210.00405 * 13 11 9 43 43 H 1.09006 * 109.46730 * 329.99704 * 13 11 9 44 44 H 0.96700 * 113.99710 * 299.99308 * 16 14 13 45 45 H 1.09001 * 109.47457 * 305.00512 * 17 14 13 46 46 H 1.09007 * 109.47220 * 64.99988 * 17 14 13 47 47 H 0.97002 * 119.99883 * 0.02562 * 18 17 14 48 48 H 0.96993 * 120.00117 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.07195 * 179.74665 * 27 8 7 50 50 H 1.07997 * 119.92788 * 180.22736 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6369 -2.2204 0.9731 6 6 2.4970 -3.0697 0.2997 7 6 2.1745 -4.4022 0.1451 8 6 0.9781 -4.8929 0.6701 9 6 0.6258 -6.3196 0.5076 10 8 0.9918 -6.9273 -0.4794 11 7 -0.1010 -6.9463 1.4539 12 6 -0.6229 -6.1917 2.5960 13 6 -0.3691 -8.3821 1.3405 14 6 0.7437 -9.1656 2.0395 15 1 0.7797 -8.8848 3.0922 16 8 1.9974 -8.8649 1.4232 17 6 0.4640 -10.6650 1.9205 18 7 1.4629 -11.4108 2.6901 19 6 1.4136 -12.7786 2.7320 20 1 0.6385 -13.3076 2.1974 21 6 2.3597 -13.4852 3.4617 22 7 3.3046 -12.8404 4.1128 23 14 2.2930 -15.3511 3.5184 24 1 2.4233 -15.8932 2.1419 25 1 3.4064 -15.8610 4.3581 26 1 0.9962 -15.7825 4.0995 27 6 0.1127 -4.0297 1.3442 28 6 0.4494 -2.7005 1.4961 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5609 -0.3871 2.0629 36 1 3.0796 -0.6610 1.1758 37 1 3.4226 -2.6888 -0.1056 38 1 2.8464 -5.0640 -0.3811 39 1 -1.6404 -5.8651 2.3814 40 1 -0.6245 -6.8275 3.4815 41 1 0.0079 -5.3211 2.7752 42 1 -1.3254 -8.6114 1.8105 43 1 -0.4051 -8.6629 0.2878 44 1 2.0375 -9.0893 0.4834 45 1 -0.5307 -10.8812 2.3103 46 1 0.5162 -10.9623 0.8730 47 1 2.1588 -10.9356 3.1705 48 1 3.9660 -13.3342 4.6224 49 1 -0.8165 -4.4024 1.7492 50 1 -0.2175 -2.0323 2.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725707391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:16 Heat of formation + Delta-G solvation = -16.625768 kcal Electronic energy + Delta-G solvation = -28654.800554 eV Core-core repulsion = 24683.458967 eV Total energy + Delta-G solvation = -3971.341587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67236 -39.20233 -37.49329 -36.95229 -35.40990 -33.96001 -32.35210 -31.39836 -31.15294 -29.40476 -28.01857 -27.55624 -27.07445 -25.33491 -23.41675 -22.99228 -22.39323 -21.39842 -21.05902 -19.82316 -17.48539 -17.11838 -16.75224 -16.42672 -16.13758 -15.91666 -15.64583 -15.33625 -15.01206 -14.85054 -14.58481 -14.38763 -14.32328 -13.84477 -13.63554 -13.30770 -13.13550 -12.88373 -12.84569 -12.77903 -12.52770 -12.46208 -12.28284 -12.16703 -12.04829 -11.90021 -11.51915 -11.44803 -11.07968 -10.90882 -10.77303 -10.62617 -10.16200 -9.93292 -9.73326 -9.56219 -9.17616 -9.05689 -8.85554 -8.76616 -8.49120 -6.88242 -5.71204 -3.00566 0.68855 1.13951 2.69786 2.92767 3.45369 3.46769 3.50747 3.52281 3.80205 4.27433 4.43900 4.45915 4.60880 4.64555 4.72718 4.82661 4.88470 4.91848 4.95044 5.02394 5.03734 5.13344 5.15374 5.21838 5.25120 5.33683 5.37046 5.40989 5.52329 5.53807 5.56951 5.59239 5.69950 5.75298 5.78337 5.98957 6.05576 6.15782 6.25718 6.28156 6.46012 6.49621 6.53653 6.56560 6.65942 6.78429 7.32274 7.71713 8.16293 8.23390 8.47096 9.58147 10.16471 10.52174 11.51178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.034529 B =14833.630906 C =15118.107386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.090 3.910 5 C -0.061 4.061 6 C -0.105 4.105 7 C -0.059 4.059 8 C -0.124 4.124 9 C 0.564 3.436 10 O -0.532 6.532 11 N -0.602 5.602 12 C 0.059 3.941 13 C 0.084 3.916 14 C 0.086 3.914 15 H 0.095 0.905 16 O -0.548 6.548 17 C 0.126 3.874 18 N -0.725 5.725 19 C -0.243 4.243 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.104 4.104 28 C -0.125 4.125 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.374 0.626 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.143 0.857 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 30.563 -5.472 32.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.062 4.062 6 C -0.124 4.124 7 C -0.078 4.078 8 C -0.127 4.127 9 C 0.353 3.647 10 O -0.409 6.409 11 N -0.334 5.334 12 C -0.083 4.083 13 C -0.039 4.039 14 C 0.026 3.974 15 H 0.113 0.887 16 O -0.353 6.353 17 C -0.003 4.003 18 N -0.370 5.370 19 C -0.374 4.374 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.122 4.122 28 C -0.143 4.143 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.221 0.779 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.222 0.778 48 H 0.065 0.935 49 H 0.160 0.840 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.091 30.049 -5.839 31.663 hybrid contribution -0.337 -0.734 0.581 0.995 sum -8.428 29.315 -5.258 30.952 Atomic orbital electron populations 1.22496 0.87140 1.02924 1.00376 1.61978 1.08356 1.13666 1.42549 1.22404 1.00934 0.88469 1.00616 1.21120 1.00787 0.89935 0.91847 1.19864 0.94516 0.94868 0.96938 1.20971 0.99980 0.92751 0.98678 1.21261 0.95222 0.95397 0.95936 1.19934 0.97075 0.93560 1.02115 1.18246 0.77589 0.86297 0.82563 1.90748 1.53288 1.67280 1.29564 1.47531 1.53092 1.09216 1.23595 1.22462 0.98669 0.98052 0.89143 1.22289 0.99269 0.79113 1.03241 1.22484 0.83614 0.94063 0.97280 0.88676 1.86544 1.33967 1.86689 1.28127 1.21236 0.93739 0.89549 0.95729 1.42237 1.32632 1.03421 1.58675 1.19185 1.10063 0.82786 1.25368 0.91314 1.24762 0.97871 0.97931 1.00389 1.69672 1.17559 1.34331 1.36319 0.86253 0.76882 0.85552 0.77385 1.21271 1.21676 1.21298 1.21861 1.00050 0.93331 0.97007 1.20960 0.96755 0.95259 1.01348 0.95607 0.91367 0.90692 0.91164 0.91163 0.95597 0.93659 0.89600 0.85330 0.84768 0.92268 0.90887 0.89231 0.89535 0.89233 0.77876 0.95795 0.96076 0.77759 0.93472 0.84006 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.13 60.06 0.55 0.67 16 2 N -0.54 -3.81 5.01 -252.73 -1.27 -5.07 16 3 C 0.02 0.12 9.57 60.06 0.57 0.70 16 4 C 0.09 0.60 5.11 -4.98 -0.03 0.58 16 5 C -0.06 -0.51 4.89 -104.53 -0.51 -1.02 16 6 C -0.11 -1.00 9.68 -39.64 -0.38 -1.38 16 7 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 8 C -0.12 -1.48 5.48 -104.96 -0.57 -2.05 16 9 C 0.56 8.14 6.89 -12.33 -0.08 8.05 16 10 O -0.53 -9.34 15.40 2.64 0.04 -9.30 16 11 N -0.60 -7.57 2.83 -182.69 -0.52 -8.08 16 12 C 0.06 0.52 8.80 59.85 0.53 1.05 16 13 C 0.08 1.13 5.19 -4.04 -0.02 1.11 16 14 C 0.09 1.48 3.27 -26.74 -0.09 1.39 16 15 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 16 O -0.55 -10.62 12.19 -37.91 -0.46 -11.09 16 17 C 0.13 2.58 5.90 -4.05 -0.02 2.56 16 18 N -0.72 -19.17 5.55 -59.91 -0.33 -19.50 16 19 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 23 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C -0.10 -0.94 7.44 -39.18 -0.29 -1.23 16 28 C -0.12 -0.97 7.94 -39.64 -0.31 -1.29 16 29 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.07 0.52 6.16 -51.93 -0.32 0.20 16 32 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.05 0.27 8.06 -51.93 -0.42 -0.15 16 36 H 0.09 0.52 8.00 -51.93 -0.42 0.10 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.64 7.95 -52.49 -0.42 1.22 16 39 H 0.06 0.38 7.42 -51.93 -0.39 -0.01 16 40 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.09 0.74 4.74 -51.93 -0.25 0.49 16 42 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.09 1.28 7.37 -51.93 -0.38 0.90 16 44 H 0.37 6.82 8.59 45.56 0.39 7.21 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.39 11.06 7.67 -40.82 -0.31 10.75 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.14 0.99 4.77 -52.49 -0.25 0.74 16 50 H 0.12 0.70 8.03 -52.49 -0.42 0.27 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -35.50 403.48 -9.41 -44.91 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.37 Total: 12.15 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.29 Total: 0.40 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.39 Total: -61.05 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.42 Total: -20.39 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.50 -9.41 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725707391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.286 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds