Wall clock time and date at job start Tue Mar 31 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00019 * 2 1 4 4 C 1.46901 * 110.99767 * 123.94888 * 2 1 3 5 5 C 1.50700 * 109.47309 * 66.04991 * 4 2 1 6 6 C 1.38361 * 119.85305 * 89.99622 * 5 4 2 7 7 C 1.37962 * 120.14401 * 180.02562 * 6 5 4 8 8 C 1.39574 * 119.85215 * 359.97438 * 7 6 5 9 9 C 1.47847 * 120.14703 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99439 * 328.54269 * 9 8 7 11 11 N 1.34776 * 120.00466 * 148.53654 * 9 8 7 12 12 C 1.46500 * 119.99506 * 4.35132 * 11 9 8 13 13 C 1.46500 * 120.00390 * 184.35719 * 11 9 8 14 14 C 1.52998 * 109.47477 * 89.99663 * 13 11 9 15 15 H 1.09006 * 109.47107 * 60.00271 * 14 13 11 16 16 O 1.42902 * 109.46915 * 300.00475 * 14 13 11 17 17 C 1.52992 * 109.47244 * 180.02562 * 14 13 11 18 18 N 1.46499 * 109.47380 * 184.99988 * 17 14 13 19 19 C 1.36933 * 120.00202 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99988 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00154 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00058 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00334 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47151 * 59.99701 * 23 21 19 25 25 H 1.48492 * 109.47507 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46842 * 300.00344 * 23 21 19 27 27 C 1.39584 * 119.71382 * 0.24843 * 8 7 6 28 28 C 1.37959 * 119.84981 * 359.51964 * 27 8 7 29 29 H 1.08996 * 109.47468 * 296.04499 * 1 2 3 30 30 H 1.08997 * 109.47028 * 56.05372 * 1 2 3 31 31 H 1.09000 * 109.46820 * 176.04720 * 1 2 3 32 32 H 1.09001 * 109.47405 * 183.95051 * 3 2 1 33 33 H 1.08996 * 109.47149 * 303.95244 * 3 2 1 34 34 H 1.09005 * 109.47424 * 63.94591 * 3 2 1 35 35 H 1.09003 * 109.47269 * 306.05265 * 4 2 1 36 36 H 1.08996 * 109.47263 * 186.05179 * 4 2 1 37 37 H 1.07991 * 119.92858 * 0.02646 * 6 5 4 38 38 H 1.07995 * 120.07490 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47326 * 94.15620 * 12 11 9 40 40 H 1.09005 * 109.47266 * 214.15601 * 12 11 9 41 41 H 1.08996 * 109.47884 * 334.15536 * 12 11 9 42 42 H 1.08997 * 109.46918 * 210.00405 * 13 11 9 43 43 H 1.09006 * 109.46730 * 329.99704 * 13 11 9 44 44 H 0.96700 * 113.99710 * 299.99308 * 16 14 13 45 45 H 1.09001 * 109.47457 * 305.00512 * 17 14 13 46 46 H 1.09007 * 109.47220 * 64.99988 * 17 14 13 47 47 H 0.97002 * 119.99883 * 0.02562 * 18 17 14 48 48 H 0.96993 * 120.00117 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.07195 * 179.74665 * 27 8 7 50 50 H 1.07997 * 119.92788 * 180.22736 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6369 -2.2204 0.9731 6 6 2.4970 -3.0697 0.2997 7 6 2.1745 -4.4022 0.1451 8 6 0.9781 -4.8929 0.6701 9 6 0.6258 -6.3196 0.5076 10 8 0.9918 -6.9273 -0.4794 11 7 -0.1010 -6.9463 1.4539 12 6 -0.6229 -6.1917 2.5960 13 6 -0.3691 -8.3821 1.3405 14 6 0.7437 -9.1656 2.0395 15 1 0.7797 -8.8848 3.0922 16 8 1.9974 -8.8649 1.4232 17 6 0.4640 -10.6650 1.9205 18 7 1.4629 -11.4108 2.6901 19 6 1.4136 -12.7786 2.7320 20 1 0.6385 -13.3076 2.1974 21 6 2.3597 -13.4852 3.4617 22 7 3.3046 -12.8404 4.1128 23 14 2.2930 -15.3511 3.5184 24 1 2.4233 -15.8932 2.1419 25 1 3.4064 -15.8610 4.3581 26 1 0.9962 -15.7825 4.0995 27 6 0.1127 -4.0297 1.3442 28 6 0.4494 -2.7005 1.4961 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5609 -0.3871 2.0629 36 1 3.0796 -0.6610 1.1758 37 1 3.4226 -2.6888 -0.1056 38 1 2.8464 -5.0640 -0.3811 39 1 -1.6404 -5.8651 2.3814 40 1 -0.6245 -6.8275 3.4815 41 1 0.0079 -5.3211 2.7752 42 1 -1.3254 -8.6114 1.8105 43 1 -0.4051 -8.6629 0.2878 44 1 2.0375 -9.0893 0.4834 45 1 -0.5307 -10.8812 2.3103 46 1 0.5162 -10.9623 0.8730 47 1 2.1588 -10.9356 3.1705 48 1 3.9660 -13.3342 4.6224 49 1 -0.8165 -4.4024 1.7492 50 1 -0.2175 -2.0323 2.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725707391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:15 Heat of formation + Delta-G solvation = -43.550050 kcal Electronic energy + Delta-G solvation = -28655.968079 eV Core-core repulsion = 24683.458967 eV Total energy + Delta-G solvation = -3972.509111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58531 -40.03366 -38.69893 -37.75465 -36.55107 -35.89438 -33.34719 -32.96266 -32.08837 -30.78010 -28.49760 -28.27773 -28.10398 -26.73637 -24.82488 -23.78081 -23.45732 -22.66135 -21.93326 -20.78415 -19.24449 -18.41859 -17.92917 -17.35369 -16.94703 -16.67998 -16.56529 -16.39554 -16.29195 -16.13965 -15.54922 -15.45204 -15.25535 -15.08040 -14.80596 -14.56398 -14.25339 -14.05198 -13.91717 -13.69999 -13.53933 -13.20900 -13.08342 -12.99967 -12.92008 -12.73772 -12.64709 -12.61760 -12.40544 -12.22266 -12.18221 -12.04784 -11.83038 -11.77596 -11.19595 -10.97724 -10.85286 -9.92256 -9.78128 -9.56830 -9.24850 -9.02931 -7.95558 -5.25900 -0.09902 0.42244 1.45672 1.49996 1.56095 1.70706 2.00974 2.55085 2.73294 3.25600 3.34677 3.42800 3.54578 3.75175 3.80887 3.83595 3.97703 4.04560 4.16868 4.24017 4.27851 4.33514 4.43875 4.45339 4.48095 4.50158 4.59791 4.62060 4.63668 4.74551 4.77518 4.78971 4.87182 4.89845 4.91252 5.05999 5.06787 5.07689 5.21003 5.29719 5.36255 5.44998 5.49354 5.57384 5.91780 6.06016 6.10633 6.24754 6.34394 6.75515 7.12951 7.31073 8.06921 8.30150 9.27710 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.034529 B =14833.630906 C =15118.107386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.560 5.560 3 C 0.024 3.976 4 C 0.092 3.908 5 C -0.057 4.057 6 C -0.111 4.111 7 C -0.082 4.082 8 C -0.147 4.147 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.601 5.601 12 C 0.051 3.949 13 C 0.094 3.906 14 C 0.095 3.905 15 H 0.091 0.909 16 O -0.568 6.568 17 C 0.125 3.875 18 N -0.741 5.741 19 C -0.251 4.251 20 H 0.078 0.922 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.979 3.021 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.273 1.273 27 C -0.096 4.096 28 C -0.118 4.118 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.375 0.625 45 H 0.043 0.957 46 H 0.021 0.979 47 H 0.373 0.627 48 H 0.251 0.749 49 H 0.166 0.834 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 32.239 -4.676 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.284 5.284 3 C -0.123 4.123 4 C -0.035 4.035 5 C -0.058 4.058 6 C -0.129 4.129 7 C -0.101 4.101 8 C -0.150 4.150 9 C 0.346 3.654 10 O -0.458 6.458 11 N -0.332 5.332 12 C -0.090 4.090 13 C -0.029 4.029 14 C 0.035 3.965 15 H 0.109 0.891 16 O -0.373 6.373 17 C -0.003 4.003 18 N -0.384 5.384 19 C -0.382 4.382 20 H 0.096 0.904 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.199 1.199 27 C -0.114 4.114 28 C -0.136 4.136 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.223 0.777 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.205 0.795 48 H 0.060 0.940 49 H 0.183 0.817 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.398 31.755 -5.045 33.793 hybrid contribution 0.330 -1.134 0.311 1.222 sum -10.069 30.621 -4.734 32.580 Atomic orbital electron populations 1.22493 0.86757 1.02522 1.01142 1.61960 1.08919 1.14700 1.42839 1.22423 1.01110 0.87630 1.01163 1.21131 1.01298 0.88663 0.92404 1.20146 0.94264 0.95693 0.95678 1.21093 1.00812 0.91997 0.99009 1.21236 0.95561 0.96264 0.97042 1.19887 0.98140 0.92728 1.04289 1.18753 0.77096 0.87332 0.82268 1.90709 1.55107 1.68498 1.31500 1.47627 1.52521 1.08837 1.24174 1.22772 1.00385 0.98013 0.87868 1.22097 0.98913 0.79493 1.02424 1.22435 0.84172 0.92520 0.97375 0.89149 1.86517 1.35661 1.86786 1.28373 1.21435 0.93003 0.91145 0.94704 1.42456 1.33488 1.03141 1.59278 1.19652 1.09849 0.84184 1.24534 0.90398 1.25667 0.97852 1.02867 1.00663 1.69851 1.18557 1.36041 1.37641 0.85135 0.77038 0.79657 0.77442 1.20501 1.22134 1.19893 1.22089 1.00136 0.93355 0.95844 1.21299 0.96704 0.95088 1.00483 0.94431 0.91115 0.91555 0.90890 0.90826 0.94828 0.92273 0.89115 0.84409 0.86901 0.88906 0.90364 0.88607 0.86219 0.90234 0.77699 0.93877 0.96124 0.79493 0.94008 0.81655 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.13 127.69 1.17 1.35 16 2 N -0.56 -6.68 5.01 -953.48 -4.78 -11.45 16 3 C 0.02 0.20 9.57 127.69 1.22 1.42 16 4 C 0.09 1.01 5.11 85.56 0.44 1.45 16 5 C -0.06 -0.85 4.89 -19.81 -0.10 -0.94 16 6 C -0.11 -2.09 9.68 22.23 0.22 -1.87 16 7 C -0.08 -2.01 9.60 22.53 0.22 -1.79 16 8 C -0.15 -3.53 5.48 -20.09 -0.11 -3.64 16 9 C 0.56 16.27 6.89 86.79 0.60 16.87 16 10 O -0.58 -21.37 15.40 -1.33 -0.02 -21.39 16 11 N -0.60 -14.43 2.83 -850.18 -2.40 -16.84 16 12 C 0.05 0.75 8.80 127.77 1.12 1.87 16 13 C 0.09 2.44 5.19 86.38 0.45 2.89 16 14 C 0.10 3.26 3.27 30.59 0.10 3.36 16 15 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 16 O -0.57 -22.79 12.19 -146.42 -1.78 -24.57 16 17 C 0.12 5.05 5.90 86.38 0.51 5.56 16 18 N -0.74 -39.62 5.55 -343.46 -1.91 -41.52 16 19 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 22 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 23 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 C -0.10 -1.52 7.44 22.53 0.17 -1.35 16 28 C -0.12 -1.50 7.94 22.23 0.18 -1.33 16 29 H 0.04 0.28 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 31 H 0.07 0.77 6.16 -2.39 -0.01 0.76 16 32 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 33 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 34 H 0.03 0.23 8.14 -2.38 -0.02 0.21 16 35 H 0.06 0.50 8.06 -2.39 -0.02 0.49 16 36 H 0.09 0.91 8.00 -2.39 -0.02 0.89 16 37 H 0.14 2.21 8.06 -2.92 -0.02 2.18 16 38 H 0.11 3.11 7.95 -2.91 -0.02 3.09 16 39 H 0.09 0.79 7.42 -2.38 -0.02 0.77 16 40 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16 41 H 0.10 1.32 4.74 -2.39 -0.01 1.31 16 42 H 0.12 2.30 8.07 -2.39 -0.02 2.28 16 43 H 0.08 2.26 7.37 -2.38 -0.02 2.24 16 44 H 0.38 14.49 8.59 -74.06 -0.64 13.85 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.37 21.85 7.67 -92.71 -0.71 21.14 16 48 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.17 1.73 4.77 -2.91 -0.01 1.72 16 50 H 0.15 1.06 8.03 -2.91 -0.02 1.04 16 Total: -1.00 -78.74 403.48 -1.50 -80.24 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.40 Total: 41.85 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 7.48 Total: 5.99 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -8.80 Total: -131.43 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.81 Total: -45.97 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -78.74 -1.50 -80.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725707391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.690 kcal (2) G-P(sol) polarization free energy of solvation -78.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds