Wall clock time and date at job start Tue Mar 31 2020 18:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46899 * 110.99579 * 2 1 4 4 C 1.46899 * 110.99896 * 123.95133 * 2 1 3 5 5 C 1.50704 * 109.46769 * 66.05017 * 4 2 1 6 6 C 1.38383 * 119.92320 * 269.97657 * 5 4 2 7 7 C 1.38346 * 120.29029 * 180.02562 * 6 5 4 8 8 C 1.37979 * 120.14313 * 359.69493 * 7 6 5 9 9 C 1.39558 * 119.85017 * 0.57670 * 8 7 6 10 10 C 1.47849 * 120.14257 * 179.72495 * 9 8 7 11 11 O 1.21552 * 119.99689 * 41.12040 * 10 9 8 12 12 N 1.34770 * 120.00166 * 221.12288 * 10 9 8 13 13 C 1.46501 * 119.99974 * 355.57818 * 12 10 9 14 14 C 1.46502 * 120.00082 * 175.57590 * 12 10 9 15 15 C 1.52994 * 109.47062 * 90.00275 * 14 12 10 16 16 H 1.09001 * 109.47389 * 59.99753 * 15 14 12 17 17 O 1.42901 * 109.47242 * 299.99791 * 15 14 12 18 18 C 1.53002 * 109.47110 * 180.02562 * 15 14 12 19 19 N 1.46498 * 109.47304 * 184.99627 * 18 15 14 20 20 C 1.36938 * 120.00222 * 179.72072 * 19 18 15 21 21 H 1.08002 * 119.99705 * 0.27906 * 20 19 18 22 22 C 1.38812 * 120.00330 * 180.27347 * 20 19 18 23 23 N 1.31626 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00357 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46735 * 90.00168 * 24 22 20 26 26 H 1.48498 * 109.47432 * 210.00470 * 24 22 20 27 27 H 1.48507 * 109.46837 * 330.00473 * 24 22 20 28 28 C 1.37928 * 119.92992 * 89.99728 * 5 4 2 29 29 H 1.09001 * 109.46881 * 296.04762 * 1 2 3 30 30 H 1.09006 * 109.46919 * 56.04642 * 1 2 3 31 31 H 1.08993 * 109.47009 * 176.04503 * 1 2 3 32 32 H 1.08998 * 109.46905 * 183.95420 * 3 2 1 33 33 H 1.09001 * 109.47674 * 303.95084 * 3 2 1 34 34 H 1.09000 * 109.47487 * 63.95807 * 3 2 1 35 35 H 1.08993 * 109.47118 * 306.04643 * 4 2 1 36 36 H 1.09000 * 109.47006 * 186.04488 * 4 2 1 37 37 H 1.08000 * 119.85699 * 359.97438 * 6 5 4 38 38 H 1.08001 * 119.92629 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.07223 * 180.27744 * 8 7 6 40 40 H 1.09001 * 109.46933 * 275.16326 * 13 12 10 41 41 H 1.09005 * 109.47063 * 35.16053 * 13 12 10 42 42 H 1.09004 * 109.47230 * 155.16323 * 13 12 10 43 43 H 1.09001 * 109.46800 * 329.99590 * 14 12 10 44 44 H 1.09006 * 109.47005 * 209.99835 * 14 12 10 45 45 H 0.96703 * 113.99689 * 300.00533 * 17 15 14 46 46 H 1.09007 * 109.47362 * 64.99584 * 18 15 14 47 47 H 1.09002 * 109.46958 * 305.00020 * 18 15 14 48 48 H 0.97002 * 119.99961 * 0.02562 * 19 18 15 49 49 H 0.96994 * 119.99858 * 179.97438 * 23 22 20 50 50 H 1.08000 * 120.07257 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6370 -2.2204 0.9728 6 6 0.4497 -2.7022 1.4955 7 6 0.1133 -4.0362 1.3491 8 6 0.9580 -4.8938 0.6746 9 6 2.1595 -4.4154 0.1501 10 6 3.0723 -5.3300 -0.5685 11 8 2.6227 -6.1559 -1.3388 12 7 4.4027 -5.2480 -0.3695 13 6 4.9520 -4.1910 0.4833 14 6 5.2996 -6.2160 -1.0058 15 6 5.7304 -5.6881 -2.3756 16 1 6.2500 -4.7380 -2.2519 17 8 4.5766 -5.4966 -3.1967 18 6 6.6665 -6.6993 -3.0405 19 7 7.1732 -6.1428 -4.2973 20 6 8.0392 -6.8710 -5.0688 21 1 8.3450 -7.8574 -4.7529 22 6 8.5238 -6.3413 -6.2569 23 7 8.1513 -5.1389 -6.6417 24 14 9.7044 -7.3349 -7.3096 25 1 8.9335 -8.1547 -8.2786 26 1 10.6054 -6.4134 -8.0472 27 1 10.5128 -8.2266 -6.4396 28 6 2.4931 -3.0684 0.3018 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6611 1.1756 37 1 -0.2168 -2.0342 2.0207 38 1 -0.8146 -4.4060 1.7597 39 1 0.6921 -5.9339 0.5571 40 1 5.0869 -3.2832 -0.1048 41 1 4.2638 -3.9927 1.3050 42 1 5.9140 -4.5107 0.8841 43 1 4.7798 -7.1661 -1.1294 44 1 6.1797 -6.3621 -0.3795 45 1 4.0644 -6.3025 -3.3495 46 1 6.1204 -7.6203 -3.2450 47 1 7.5025 -6.9130 -2.3745 48 1 6.8988 -5.2567 -4.5809 49 1 8.4902 -4.7687 -7.4716 50 1 3.4198 -2.6913 -0.1050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725774024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:22 Heat of formation + Delta-G solvation = -27.376923 kcal Electronic energy + Delta-G solvation = -29063.731859 eV Core-core repulsion = 25091.924067 eV Total energy + Delta-G solvation = -3971.807792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61520 -39.14417 -37.42913 -36.90202 -35.31777 -33.92347 -32.09506 -31.78672 -31.09343 -29.18413 -27.92946 -27.23574 -26.89215 -25.64197 -23.57862 -23.02106 -22.41402 -21.39852 -20.98502 -19.37184 -17.40462 -17.09693 -16.79190 -16.47723 -16.03786 -15.89234 -15.79900 -15.33424 -15.02372 -14.98916 -14.50504 -14.38189 -14.16053 -13.61798 -13.54088 -13.17614 -13.04643 -12.93470 -12.74261 -12.69295 -12.56530 -12.36379 -12.30932 -12.10780 -12.05928 -11.86631 -11.66294 -11.41063 -11.17134 -10.89007 -10.77435 -10.58399 -10.11302 -9.93002 -9.71183 -9.51892 -9.12517 -9.10479 -8.84198 -8.68506 -8.45612 -6.86121 -5.69479 -2.98740 0.75690 1.08146 2.72864 2.94295 3.40325 3.47552 3.51946 3.54002 3.84573 4.28537 4.40546 4.55985 4.62592 4.76235 4.80129 4.86682 4.89790 4.96749 5.01644 5.07172 5.09558 5.11182 5.20493 5.25827 5.31185 5.33017 5.40383 5.53810 5.55085 5.59133 5.60045 5.61895 5.70575 5.72754 5.80283 6.05081 6.10011 6.15595 6.21390 6.30088 6.48292 6.57351 6.59091 6.63506 6.66870 6.81500 7.33425 7.73730 8.17125 8.31611 8.48977 9.59909 10.18610 10.54290 11.52996 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.002345 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.227703 B =11936.979998 C =13046.711848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.094 3.906 5 C -0.089 4.089 6 C -0.096 4.096 7 C -0.127 4.127 8 C -0.068 4.068 9 C -0.122 4.122 10 C 0.564 3.436 11 O -0.526 6.526 12 N -0.603 5.603 13 C 0.073 3.927 14 C 0.086 3.914 15 C 0.086 3.914 16 H 0.095 0.905 17 O -0.547 6.547 18 C 0.126 3.874 19 N -0.725 5.725 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.069 4.069 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.374 0.626 46 H 0.021 0.979 47 H 0.024 0.976 48 H 0.388 0.612 49 H 0.255 0.745 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 9.785 24.375 30.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.033 4.033 5 C -0.089 4.089 6 C -0.114 4.114 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.125 4.125 10 C 0.352 3.648 11 O -0.403 6.403 12 N -0.335 5.335 13 C -0.070 4.070 14 C -0.037 4.037 15 C 0.025 3.975 16 H 0.113 0.887 17 O -0.352 6.352 18 C -0.003 4.003 19 N -0.370 5.370 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.087 4.087 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.222 0.778 46 H 0.039 0.961 47 H 0.041 0.959 48 H 0.223 0.777 49 H 0.065 0.935 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.867 9.620 23.470 29.918 hybrid contribution 0.212 -0.315 0.013 0.380 sum -15.655 9.304 23.482 29.716 Atomic orbital electron populations 1.22483 0.87204 1.02799 1.00314 1.61957 1.08288 1.13780 1.42528 1.22406 1.01084 0.88347 1.00548 1.21062 1.00755 0.89708 0.91771 1.19616 0.94982 0.94991 0.99319 1.21189 0.95845 0.95568 0.98826 1.21051 0.99877 0.93434 1.00145 1.21186 0.92022 1.00416 0.95036 1.19926 0.96407 0.94383 1.01747 1.18228 0.81765 0.83312 0.81457 1.90750 1.76206 1.37646 1.35688 1.47567 1.05871 1.31320 1.48784 1.22112 0.99823 0.90854 0.94234 1.22319 0.93634 0.92561 0.95232 1.22476 0.87023 0.99987 0.87976 0.88714 1.86551 1.39348 1.38050 1.71213 1.21246 0.94711 0.94639 0.89682 1.42254 1.54490 1.19727 1.20537 1.19224 1.18517 0.98558 1.00955 0.91290 1.24765 1.01030 0.96879 0.98345 1.69687 1.48140 1.16011 1.23999 0.86183 0.80551 0.78903 0.80493 1.21717 1.21778 1.20813 1.21444 0.99806 0.91835 0.95661 0.95751 0.91289 0.90836 0.91045 0.91080 0.95698 0.93796 0.89634 0.86146 0.85470 0.85237 0.92113 0.90828 0.90741 0.89529 0.89531 0.77811 0.96132 0.95854 0.77732 0.93530 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.14 60.07 0.55 0.70 16 2 N -0.54 -4.60 5.01 -252.71 -1.27 -5.87 16 3 C 0.02 0.16 9.57 60.06 0.57 0.74 16 4 C 0.09 0.69 5.11 -4.97 -0.03 0.67 16 5 C -0.09 -0.77 4.88 -104.68 -0.51 -1.28 16 6 C -0.10 -0.74 7.96 -39.49 -0.31 -1.05 16 7 C -0.13 -1.05 10.03 -39.64 -0.40 -1.44 16 8 C -0.07 -0.71 9.65 -39.18 -0.38 -1.09 16 9 C -0.12 -1.45 5.15 -104.97 -0.54 -2.00 16 10 C 0.56 8.18 6.90 -12.33 -0.09 8.10 16 11 O -0.53 -9.35 15.06 -7.93 -0.12 -9.47 16 12 N -0.60 -7.62 2.83 -182.69 -0.52 -8.14 16 13 C 0.07 0.65 8.96 59.85 0.54 1.19 16 14 C 0.09 1.16 5.18 -4.04 -0.02 1.14 16 15 C 0.09 1.50 3.27 -26.73 -0.09 1.41 16 16 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 17 O -0.55 -10.93 12.00 -48.49 -0.58 -11.51 16 18 C 0.13 2.60 5.90 -4.04 -0.02 2.58 16 19 N -0.73 -19.37 5.55 -59.91 -0.33 -19.70 16 20 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 24 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 C -0.07 -0.71 7.27 -39.19 -0.29 -0.99 16 29 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.07 0.59 6.16 -51.93 -0.32 0.27 16 32 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.04 0.27 8.06 -51.93 -0.42 -0.15 16 36 H 0.09 0.57 8.00 -51.93 -0.42 0.15 16 37 H 0.12 0.69 8.03 -52.49 -0.42 0.27 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.06 0.54 6.85 -51.93 -0.36 0.19 16 41 H 0.07 0.56 6.00 -51.93 -0.31 0.25 16 42 H 0.07 0.55 7.83 -51.93 -0.41 0.14 16 43 H 0.09 1.23 7.49 -51.93 -0.39 0.84 16 44 H 0.09 0.95 7.86 -51.93 -0.41 0.55 16 45 H 0.37 7.11 8.32 45.56 0.38 7.49 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.39 11.18 7.67 -40.82 -0.31 10.87 16 49 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.14 1.37 5.52 -52.49 -0.29 1.08 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -35.90 403.96 -9.72 -45.62 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.44 Total: 12.55 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.26 Total: 0.98 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -1.39 Total: -62.27 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.70 Total: -20.98 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.90 -9.72 -45.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725774024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.245 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds