Wall clock time and date at job start Tue Mar 31 2020 18:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46899 * 110.99579 * 2 1 4 4 C 1.46899 * 110.99896 * 123.95133 * 2 1 3 5 5 C 1.50704 * 109.46769 * 66.05017 * 4 2 1 6 6 C 1.38383 * 119.92320 * 269.97657 * 5 4 2 7 7 C 1.38346 * 120.29029 * 180.02562 * 6 5 4 8 8 C 1.37979 * 120.14313 * 359.69493 * 7 6 5 9 9 C 1.39558 * 119.85017 * 0.57670 * 8 7 6 10 10 C 1.47849 * 120.14257 * 179.72495 * 9 8 7 11 11 O 1.21552 * 119.99689 * 41.12040 * 10 9 8 12 12 N 1.34770 * 120.00166 * 221.12288 * 10 9 8 13 13 C 1.46501 * 119.99974 * 355.57818 * 12 10 9 14 14 C 1.46502 * 120.00082 * 175.57590 * 12 10 9 15 15 C 1.52994 * 109.47062 * 90.00275 * 14 12 10 16 16 H 1.09001 * 109.47389 * 59.99753 * 15 14 12 17 17 O 1.42901 * 109.47242 * 299.99791 * 15 14 12 18 18 C 1.53002 * 109.47110 * 180.02562 * 15 14 12 19 19 N 1.46498 * 109.47304 * 184.99627 * 18 15 14 20 20 C 1.36938 * 120.00222 * 179.72072 * 19 18 15 21 21 H 1.08002 * 119.99705 * 0.27906 * 20 19 18 22 22 C 1.38812 * 120.00330 * 180.27347 * 20 19 18 23 23 N 1.31626 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00357 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46735 * 90.00168 * 24 22 20 26 26 H 1.48498 * 109.47432 * 210.00470 * 24 22 20 27 27 H 1.48507 * 109.46837 * 330.00473 * 24 22 20 28 28 C 1.37928 * 119.92992 * 89.99728 * 5 4 2 29 29 H 1.09001 * 109.46881 * 296.04762 * 1 2 3 30 30 H 1.09006 * 109.46919 * 56.04642 * 1 2 3 31 31 H 1.08993 * 109.47009 * 176.04503 * 1 2 3 32 32 H 1.08998 * 109.46905 * 183.95420 * 3 2 1 33 33 H 1.09001 * 109.47674 * 303.95084 * 3 2 1 34 34 H 1.09000 * 109.47487 * 63.95807 * 3 2 1 35 35 H 1.08993 * 109.47118 * 306.04643 * 4 2 1 36 36 H 1.09000 * 109.47006 * 186.04488 * 4 2 1 37 37 H 1.08000 * 119.85699 * 359.97438 * 6 5 4 38 38 H 1.08001 * 119.92629 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.07223 * 180.27744 * 8 7 6 40 40 H 1.09001 * 109.46933 * 275.16326 * 13 12 10 41 41 H 1.09005 * 109.47063 * 35.16053 * 13 12 10 42 42 H 1.09004 * 109.47230 * 155.16323 * 13 12 10 43 43 H 1.09001 * 109.46800 * 329.99590 * 14 12 10 44 44 H 1.09006 * 109.47005 * 209.99835 * 14 12 10 45 45 H 0.96703 * 113.99689 * 300.00533 * 17 15 14 46 46 H 1.09007 * 109.47362 * 64.99584 * 18 15 14 47 47 H 1.09002 * 109.46958 * 305.00020 * 18 15 14 48 48 H 0.97002 * 119.99961 * 0.02562 * 19 18 15 49 49 H 0.96994 * 119.99858 * 179.97438 * 23 22 20 50 50 H 1.08000 * 120.07257 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6370 -2.2204 0.9728 6 6 0.4497 -2.7022 1.4955 7 6 0.1133 -4.0362 1.3491 8 6 0.9580 -4.8938 0.6746 9 6 2.1595 -4.4154 0.1501 10 6 3.0723 -5.3300 -0.5685 11 8 2.6227 -6.1559 -1.3388 12 7 4.4027 -5.2480 -0.3695 13 6 4.9520 -4.1910 0.4833 14 6 5.2996 -6.2160 -1.0058 15 6 5.7304 -5.6881 -2.3756 16 1 6.2500 -4.7380 -2.2519 17 8 4.5766 -5.4966 -3.1967 18 6 6.6665 -6.6993 -3.0405 19 7 7.1732 -6.1428 -4.2973 20 6 8.0392 -6.8710 -5.0688 21 1 8.3450 -7.8574 -4.7529 22 6 8.5238 -6.3413 -6.2569 23 7 8.1513 -5.1389 -6.6417 24 14 9.7044 -7.3349 -7.3096 25 1 8.9335 -8.1547 -8.2786 26 1 10.6054 -6.4134 -8.0472 27 1 10.5128 -8.2266 -6.4396 28 6 2.4931 -3.0684 0.3018 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6611 1.1756 37 1 -0.2168 -2.0342 2.0207 38 1 -0.8146 -4.4060 1.7597 39 1 0.6921 -5.9339 0.5571 40 1 5.0869 -3.2832 -0.1048 41 1 4.2638 -3.9927 1.3050 42 1 5.9140 -4.5107 0.8841 43 1 4.7798 -7.1661 -1.1294 44 1 6.1797 -6.3621 -0.3795 45 1 4.0644 -6.3025 -3.3495 46 1 6.1204 -7.6203 -3.2450 47 1 7.5025 -6.9130 -2.3745 48 1 6.8988 -5.2567 -4.5809 49 1 8.4902 -4.7687 -7.4716 50 1 3.4198 -2.6913 -0.1050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725774024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:21 Heat of formation + Delta-G solvation = -53.929998 kcal Electronic energy + Delta-G solvation = -29064.883287 eV Core-core repulsion = 25091.924067 eV Total energy + Delta-G solvation = -3972.959220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53594 -40.01116 -38.66072 -37.74795 -36.50033 -35.87409 -33.26256 -32.78023 -32.47953 -30.60470 -28.46936 -28.12550 -27.63097 -27.12134 -25.06989 -23.83834 -23.51252 -22.67113 -21.98773 -20.29987 -19.23992 -18.34590 -17.90478 -17.39979 -17.10139 -16.70406 -16.56891 -16.39112 -16.37767 -16.00180 -15.87654 -15.50625 -15.12441 -15.03626 -14.76338 -14.45517 -14.16247 -13.94295 -13.77478 -13.68419 -13.53193 -13.20011 -13.18617 -12.97157 -12.93274 -12.77915 -12.75070 -12.59522 -12.42192 -12.34577 -12.16861 -12.03256 -11.84983 -11.81174 -11.18690 -10.98620 -10.84853 -9.87380 -9.82316 -9.57746 -9.23179 -9.02612 -7.95200 -5.25626 -0.01499 0.37633 1.45685 1.48988 1.57179 1.74519 1.96692 2.55168 2.67784 3.27041 3.35449 3.43072 3.55209 3.73662 3.78600 3.92927 4.04717 4.12069 4.18806 4.23194 4.28822 4.32069 4.38645 4.45758 4.46676 4.52564 4.57056 4.61103 4.64275 4.70851 4.73080 4.79253 4.86337 4.90823 4.92964 5.04600 5.05412 5.06238 5.22653 5.35999 5.42315 5.45535 5.50054 5.53884 5.92407 6.08959 6.11274 6.25301 6.33274 6.79286 7.12830 7.31366 8.07284 8.30489 9.28380 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.002345 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.227703 B =11936.979998 C =13046.711848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.567 5.567 3 C 0.025 3.975 4 C 0.096 3.904 5 C -0.088 4.088 6 C -0.087 4.087 7 C -0.122 4.122 8 C -0.082 4.082 9 C -0.143 4.143 10 C 0.555 3.445 11 O -0.572 6.572 12 N -0.602 5.602 13 C 0.068 3.932 14 C 0.095 3.905 15 C 0.095 3.905 16 H 0.089 0.911 17 O -0.567 6.567 18 C 0.124 3.876 19 N -0.742 5.742 20 C -0.248 4.248 21 H 0.078 0.922 22 C -0.080 4.080 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.265 1.265 28 C -0.074 4.074 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.375 0.625 46 H 0.021 0.979 47 H 0.043 0.957 48 H 0.373 0.627 49 H 0.251 0.749 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 10.213 26.757 32.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.031 4.031 5 C -0.089 4.089 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.101 4.101 9 C -0.146 4.146 10 C 0.345 3.655 11 O -0.452 6.452 12 N -0.332 5.332 13 C -0.074 4.074 14 C -0.028 4.028 15 C 0.035 3.965 16 H 0.107 0.893 17 O -0.373 6.373 18 C -0.003 4.003 19 N -0.385 5.385 20 C -0.380 4.380 21 H 0.096 0.904 22 C -0.272 4.272 23 N -0.621 5.621 24 Si 0.807 3.193 25 H -0.216 1.216 26 H -0.220 1.220 27 H -0.190 1.190 28 C -0.093 4.093 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.223 0.777 46 H 0.039 0.961 47 H 0.061 0.939 48 H 0.205 0.795 49 H 0.060 0.940 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.997 10.038 25.921 32.071 hybrid contribution 0.187 -0.408 -0.646 0.787 sum -15.810 9.630 25.275 31.329 Atomic orbital electron populations 1.22463 0.86789 1.02367 1.01074 1.61935 1.08950 1.14780 1.43433 1.22401 1.01024 0.87698 1.01124 1.21086 1.01255 0.88608 0.92159 1.19822 0.94939 0.95558 0.98572 1.21518 0.95568 0.95667 0.97761 1.21340 1.00204 0.93365 0.99052 1.21291 0.92182 1.00734 0.95899 1.19840 0.96836 0.94708 1.03223 1.18775 0.82598 0.83101 0.81008 1.90710 1.77100 1.39666 1.37703 1.47665 1.05364 1.31700 1.48509 1.22342 1.01133 0.89800 0.94109 1.22148 0.94914 0.92198 0.93554 1.22435 0.85645 0.98982 0.89460 0.89284 1.86522 1.40102 1.38479 1.72192 1.21446 0.95735 0.95203 0.87912 1.42484 1.54498 1.19130 1.22358 1.19681 1.18171 0.98903 1.01221 0.90368 1.25677 1.03382 0.98112 0.99990 1.69863 1.49918 1.17931 1.24428 0.85064 0.78249 0.77396 0.78571 1.21564 1.22025 1.18990 1.21442 1.00303 0.91353 0.96203 0.94161 0.91518 0.91667 0.91069 0.91263 0.94436 0.92035 0.89143 0.83420 0.82843 0.85904 0.92131 0.89348 0.88505 0.90278 0.86174 0.77693 0.96096 0.93879 0.79501 0.94012 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.14 127.69 1.17 1.44 16 2 N -0.57 -8.66 5.01 -953.45 -4.78 -13.44 16 3 C 0.03 0.30 9.57 127.69 1.22 1.52 16 4 C 0.10 1.19 5.11 85.56 0.44 1.63 16 5 C -0.09 -1.37 4.88 -19.90 -0.10 -1.47 16 6 C -0.09 -1.11 7.96 22.33 0.18 -0.93 16 7 C -0.12 -1.76 10.03 22.23 0.22 -1.54 16 8 C -0.08 -1.70 9.65 22.53 0.22 -1.48 16 9 C -0.14 -3.43 5.15 -20.09 -0.10 -3.53 16 10 C 0.56 16.47 6.90 86.79 0.60 17.07 16 11 O -0.57 -21.25 15.06 8.79 0.13 -21.11 16 12 N -0.60 -14.93 2.83 -850.18 -2.40 -17.33 16 13 C 0.07 1.12 8.96 127.77 1.15 2.26 16 14 C 0.10 2.50 5.18 86.38 0.45 2.95 16 15 C 0.10 3.32 3.27 30.59 0.10 3.42 16 16 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 17 O -0.57 -23.46 12.00 -136.31 -1.64 -25.09 16 18 C 0.12 5.10 5.90 86.38 0.51 5.61 16 19 N -0.74 -40.09 5.55 -343.44 -1.91 -42.00 16 20 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 23 N -0.97 -62.37 13.06 21.65 0.28 -62.08 16 24 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 C -0.07 -1.47 7.27 22.52 0.16 -1.31 16 29 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 31 H 0.06 0.93 6.16 -2.39 -0.01 0.92 16 32 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 33 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.06 0.56 8.06 -2.39 -0.02 0.54 16 36 H 0.09 1.02 8.00 -2.39 -0.02 1.00 16 37 H 0.15 1.10 8.03 -2.91 -0.02 1.08 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.06 1.02 6.85 -2.39 -0.02 1.00 16 41 H 0.09 1.22 6.00 -2.38 -0.01 1.20 16 42 H 0.10 1.17 7.83 -2.38 -0.02 1.15 16 43 H 0.08 2.23 7.49 -2.39 -0.02 2.21 16 44 H 0.12 2.34 7.86 -2.38 -0.02 2.32 16 45 H 0.38 14.99 8.32 -74.06 -0.62 14.38 16 46 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.37 22.09 7.67 -92.71 -0.71 21.38 16 49 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.13 2.62 5.52 -2.91 -0.02 2.61 16 Total: -1.00 -78.99 403.96 -1.14 -80.13 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.38 Total: 43.59 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 7.51 Total: 7.74 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -8.80 Total: -134.86 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -1.50 Total: -46.21 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -78.99 -1.14 -80.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725774024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.205 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds