Wall clock time and date at job start Tue Mar 31 2020 18:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99835 * 2 1 4 4 C 1.50703 * 109.47067 * 66.04990 * 3 2 1 5 5 O 1.21293 * 119.99981 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00222 * 180.02562 * 4 3 2 7 7 C 1.37097 * 120.00116 * 179.72504 * 6 4 3 8 8 H 1.08000 * 119.99964 * 359.97438 * 7 6 4 9 9 C 1.38957 * 119.99763 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99601 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00303 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47045 * 89.99506 * 11 9 7 13 13 H 1.48493 * 109.47325 * 210.00148 * 11 9 7 14 14 H 1.48509 * 109.47019 * 329.99871 * 11 9 7 15 15 C 1.46897 * 110.99735 * 236.05104 * 2 1 3 16 16 H 1.09003 * 109.49643 * 178.95329 * 15 2 1 17 17 C 1.53048 * 109.49595 * 299.01512 * 15 2 1 18 18 C 1.53041 * 109.53675 * 181.28362 * 17 15 2 19 19 C 1.53190 * 109.33924 * 298.68571 * 18 17 15 20 20 N 1.46919 * 108.77749 * 54.62204 * 19 18 17 21 21 C 1.34776 * 120.63518 * 126.37053 * 20 19 18 22 22 O 1.21611 * 120.00651 * 173.71821 * 21 20 19 23 23 C 1.47109 * 119.99656 * 353.71617 * 21 20 19 24 24 C 1.32607 * 124.61823 * 204.49768 * 23 21 20 25 25 C 1.51111 * 110.75665 * 180.02562 * 24 23 21 26 26 C 1.54578 * 104.84242 * 16.59862 * 25 24 23 27 27 C 1.51110 * 124.61993 * 24.19922 * 23 21 20 28 28 C 1.46923 * 118.73927 * 306.38549 * 20 19 18 29 29 H 1.08992 * 109.47284 * 59.99781 * 1 2 3 30 30 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46941 * 299.99440 * 1 2 3 32 32 H 1.09000 * 109.47266 * 306.05266 * 3 2 1 33 33 H 1.08997 * 109.47257 * 186.04999 * 3 2 1 34 34 H 0.97005 * 119.99656 * 359.97438 * 6 4 3 35 35 H 0.96995 * 119.99650 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.45995 * 301.33793 * 17 15 2 37 37 H 1.09001 * 109.46150 * 61.30007 * 17 15 2 38 38 H 1.08998 * 109.49793 * 178.71125 * 18 17 15 39 39 H 1.09001 * 109.46911 * 58.63825 * 18 17 15 40 40 H 1.09000 * 109.58668 * 294.82864 * 19 18 17 41 41 H 1.09006 * 109.70210 * 174.47644 * 19 18 17 42 42 H 1.07999 * 124.62735 * 359.97438 * 24 23 21 43 43 H 1.09004 * 110.36664 * 135.44061 * 25 24 23 44 44 H 1.09003 * 110.36897 * 257.75969 * 25 24 23 45 45 H 1.09005 * 110.97896 * 93.07067 * 26 25 24 46 46 H 1.08995 * 110.98905 * 216.87076 * 26 25 24 47 47 H 1.09000 * 110.36911 * 282.24208 * 27 23 21 48 48 H 1.09008 * 110.36619 * 44.55962 * 27 23 21 49 49 H 1.09002 * 109.59199 * 293.82603 * 28 20 19 50 50 H 1.09001 * 109.71037 * 173.46715 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1409 6 7 2.0180 3.3201 1.5234 7 6 1.6870 3.9366 2.7024 8 1 1.1206 3.4023 3.4507 9 6 2.0804 5.2490 2.9344 10 7 1.7635 5.8397 4.0647 11 14 3.0594 6.1735 1.6398 12 1 2.1270 6.8770 0.7229 13 1 3.9441 7.1649 2.3026 14 1 3.8855 5.2132 0.8646 15 6 1.9954 -0.7659 -1.1376 16 1 3.0849 -0.7344 -1.1245 17 6 1.5251 -2.2188 -1.0366 18 6 2.0992 -3.0249 -2.2040 19 6 1.5870 -2.4408 -3.5243 20 7 1.9094 -1.0079 -3.5642 21 6 2.5847 -0.4847 -4.6067 22 8 2.7461 0.7181 -4.6847 23 6 3.1265 -1.3687 -5.6503 24 6 4.1541 -1.0687 -6.4329 25 6 4.4452 -2.1997 -7.3917 26 6 3.1722 -3.0763 -7.3683 27 6 2.5920 -2.7450 -5.9722 28 6 1.4820 -0.1562 -2.4460 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.5610 1.9274 -0.8308 33 1 3.0797 1.3445 -0.1083 34 1 2.5233 3.8014 0.8496 35 1 2.0378 6.7559 4.2265 36 1 1.8689 -2.6471 -0.0951 37 1 0.4363 -2.2515 -1.0742 38 1 1.7826 -4.0644 -2.1189 39 1 3.1877 -2.9726 -2.1811 40 1 0.5071 -2.5743 -3.5884 41 1 2.0680 -2.9470 -4.3613 42 1 4.7070 -0.1419 -6.3914 43 1 4.6197 -1.8111 -8.3951 44 1 5.3071 -2.7735 -7.0511 45 1 2.4833 -2.7853 -8.1613 46 1 3.4251 -4.1340 -7.4416 47 1 2.9366 -3.4683 -5.2331 48 1 1.5027 -2.7297 -6.0098 49 1 0.3935 -0.1034 -2.4220 50 1 1.8938 0.8455 -2.5685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731719019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:42 Heat of formation + Delta-G solvation = -13.807617 kcal Electronic energy + Delta-G solvation = -29706.582580 eV Core-core repulsion = 25735.363197 eV Total energy + Delta-G solvation = -3971.219383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93940 -39.26932 -38.23108 -37.63388 -35.83251 -33.88604 -32.63165 -31.63415 -30.80973 -29.73601 -28.70528 -27.92885 -25.91578 -25.41169 -24.03101 -22.43571 -21.58147 -21.43762 -19.52810 -19.27492 -18.70485 -18.18718 -17.14194 -16.54843 -16.28990 -15.93234 -15.47628 -15.20892 -15.07256 -14.88336 -14.59944 -14.38285 -13.94015 -13.67094 -13.36908 -13.29394 -13.14318 -13.04043 -12.85797 -12.75074 -12.47263 -12.35888 -12.13721 -12.02171 -11.75347 -11.70188 -11.58917 -11.44731 -11.32678 -11.04619 -10.88296 -10.61780 -10.55273 -10.52261 -10.01884 -9.93666 -9.49707 -9.39997 -9.01122 -8.49233 -8.13974 -7.83863 -6.27602 -3.78621 1.09828 2.70327 2.95525 3.07935 3.11939 3.19326 3.78009 3.90076 3.95793 4.07768 4.14541 4.35692 4.46715 4.63412 4.66502 4.68072 4.74623 4.86872 4.92323 5.02366 5.07567 5.13048 5.19841 5.23240 5.26671 5.32394 5.38320 5.43110 5.47096 5.53897 5.58530 5.62828 5.64569 5.73181 5.75009 5.87101 5.88988 5.92217 5.98986 6.10222 6.12301 6.12894 6.26512 6.53516 7.14800 7.20443 7.31250 7.62364 7.96959 8.18357 8.64211 8.98997 9.46629 9.87724 10.85483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.002611 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.248886 B =10722.858240 C =12076.520687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.504 5.504 3 C 0.039 3.961 4 C 0.455 3.545 5 O -0.560 6.560 6 N -0.591 5.591 7 C -0.303 4.303 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.073 3.927 16 H 0.084 0.916 17 C -0.113 4.113 18 C -0.133 4.133 19 C 0.060 3.940 20 N -0.599 5.599 21 C 0.564 3.436 22 O -0.541 6.541 23 C -0.193 4.193 24 C -0.076 4.076 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.093 4.093 28 C 0.075 3.925 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -21.253 -24.844 32.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.227 5.227 3 C -0.093 4.093 4 C 0.240 3.760 5 O -0.442 6.442 6 N -0.231 5.231 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.704 3.296 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.194 1.194 15 C -0.037 4.037 16 H 0.102 0.898 17 C -0.150 4.150 18 C -0.172 4.172 19 C -0.062 4.062 20 N -0.332 5.332 21 C 0.354 3.646 22 O -0.419 6.419 23 C -0.196 4.196 24 C -0.096 4.096 25 C -0.144 4.144 26 C -0.164 4.164 27 C -0.130 4.130 28 C -0.049 4.049 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.203 0.797 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.141 0.859 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.294 -21.050 -23.692 31.863 hybrid contribution 0.505 1.451 -1.509 2.154 sum 3.799 -19.598 -25.201 32.150 Atomic orbital electron populations 1.22671 0.86800 1.01831 1.02162 1.61896 1.08896 1.12678 1.39209 1.21959 1.00931 0.89351 0.97034 1.19594 0.85069 0.82416 0.88885 1.90517 1.42714 1.64114 1.46809 1.42220 1.50850 1.11951 1.18066 1.19420 1.33417 0.96166 0.94174 0.86259 1.25031 0.97880 0.96519 0.96731 1.69620 1.45830 1.13488 1.23276 0.86691 0.80584 0.80578 0.81705 1.19632 1.20173 1.19417 1.22137 1.00169 0.94067 0.87328 0.89783 1.21601 1.00961 0.93741 0.98742 1.21909 1.01377 0.99523 0.94344 1.22976 1.01330 0.80880 1.01020 1.47880 1.55804 1.09334 1.20151 1.18065 0.77727 0.87486 0.81312 1.90811 1.59055 1.14979 1.77091 1.21769 1.01003 0.97187 0.99612 1.24026 0.94552 0.98139 0.92846 1.21484 0.98854 0.94932 0.99140 1.22548 0.96878 1.00102 0.96853 1.21614 1.01191 0.93330 0.96837 1.22500 1.00284 0.95993 0.86112 0.96328 0.91692 0.88351 0.93109 0.89283 0.79693 0.91656 0.90349 0.91434 0.90397 0.91395 0.91526 0.85871 0.84534 0.90120 0.89561 0.90658 0.90337 0.88848 0.90262 0.91044 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 8.41 60.07 0.51 0.71 16 2 N -0.50 -8.15 4.49 -236.18 -1.06 -9.21 16 3 C 0.04 0.69 4.90 -4.97 -0.02 0.66 16 4 C 0.45 10.59 7.51 -10.99 -0.08 10.51 16 5 O -0.56 -15.02 13.88 5.55 0.08 -14.95 16 6 N -0.59 -14.54 5.09 -10.96 -0.06 -14.60 16 7 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 10 N -0.88 -26.18 13.96 55.50 0.77 -25.41 16 11 Si 0.88 20.04 27.73 -169.99 -4.71 15.33 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.27 -5.67 6.52 56.52 0.37 -5.30 16 15 C 0.07 0.93 2.37 -67.59 -0.16 0.77 16 16 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 17 C -0.11 -1.14 4.93 -26.68 -0.13 -1.27 16 18 C -0.13 -0.98 6.08 -26.61 -0.16 -1.14 16 19 C 0.06 0.44 5.78 -3.72 -0.02 0.42 16 20 N -0.60 -6.61 2.97 -174.16 -0.52 -7.13 16 21 C 0.56 7.15 7.60 -12.66 -0.10 7.05 16 22 O -0.54 -9.08 16.34 5.27 0.09 -9.00 16 23 C -0.19 -1.74 5.83 -102.73 -0.60 -2.34 16 24 C -0.08 -0.61 10.51 -36.01 -0.38 -0.99 16 25 C -0.11 -0.53 6.80 -26.85 -0.18 -0.71 16 26 C -0.13 -0.53 7.17 -24.97 -0.18 -0.71 16 27 C -0.09 -0.51 4.45 -26.75 -0.12 -0.63 16 28 C 0.08 0.96 5.00 -3.71 -0.02 0.94 16 29 H 0.02 0.27 6.39 -51.93 -0.33 -0.07 16 30 H 0.06 0.86 6.16 -51.93 -0.32 0.54 16 31 H 0.10 1.90 5.88 -51.93 -0.31 1.60 16 32 H 0.05 0.84 7.07 -51.93 -0.37 0.47 16 33 H 0.09 1.45 8.00 -51.93 -0.42 1.04 16 34 H 0.37 8.14 5.76 -40.82 -0.24 7.91 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.67 6.41 -51.93 -0.33 0.34 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.12 0.68 2.04 -71.99 -0.15 0.53 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 0.37 6.47 -51.93 -0.34 0.04 16 48 H 0.08 0.40 7.50 -51.92 -0.39 0.01 16 49 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 50 H 0.09 1.38 5.96 -51.93 -0.31 1.07 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -35.27 378.99 -9.19 -44.46 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.59 Total: 9.35 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.90 Total: 5.45 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.86 Total: -56.35 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.16 Total: -23.94 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.71 Total: 15.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.27 -9.19 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731719019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.649 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds