Wall clock time and date at job start Tue Mar 31 2020 18:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99835 * 2 1 4 4 C 1.50703 * 109.47067 * 66.04990 * 3 2 1 5 5 O 1.21293 * 119.99981 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00222 * 180.02562 * 4 3 2 7 7 C 1.37097 * 120.00116 * 179.72504 * 6 4 3 8 8 H 1.08000 * 119.99964 * 359.97438 * 7 6 4 9 9 C 1.38957 * 119.99763 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99601 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00303 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47045 * 89.99506 * 11 9 7 13 13 H 1.48493 * 109.47325 * 210.00148 * 11 9 7 14 14 H 1.48509 * 109.47019 * 329.99871 * 11 9 7 15 15 C 1.46897 * 110.99735 * 236.05104 * 2 1 3 16 16 H 1.09003 * 109.49643 * 178.95329 * 15 2 1 17 17 C 1.53048 * 109.49595 * 299.01512 * 15 2 1 18 18 C 1.53041 * 109.53675 * 181.28362 * 17 15 2 19 19 C 1.53190 * 109.33924 * 298.68571 * 18 17 15 20 20 N 1.46919 * 108.77749 * 54.62204 * 19 18 17 21 21 C 1.34776 * 120.63518 * 126.37053 * 20 19 18 22 22 O 1.21611 * 120.00651 * 173.71821 * 21 20 19 23 23 C 1.47109 * 119.99656 * 353.71617 * 21 20 19 24 24 C 1.32607 * 124.61823 * 204.49768 * 23 21 20 25 25 C 1.51111 * 110.75665 * 180.02562 * 24 23 21 26 26 C 1.54578 * 104.84242 * 16.59862 * 25 24 23 27 27 C 1.51110 * 124.61993 * 24.19922 * 23 21 20 28 28 C 1.46923 * 118.73927 * 306.38549 * 20 19 18 29 29 H 1.08992 * 109.47284 * 59.99781 * 1 2 3 30 30 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46941 * 299.99440 * 1 2 3 32 32 H 1.09000 * 109.47266 * 306.05266 * 3 2 1 33 33 H 1.08997 * 109.47257 * 186.04999 * 3 2 1 34 34 H 0.97005 * 119.99656 * 359.97438 * 6 4 3 35 35 H 0.96995 * 119.99650 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.45995 * 301.33793 * 17 15 2 37 37 H 1.09001 * 109.46150 * 61.30007 * 17 15 2 38 38 H 1.08998 * 109.49793 * 178.71125 * 18 17 15 39 39 H 1.09001 * 109.46911 * 58.63825 * 18 17 15 40 40 H 1.09000 * 109.58668 * 294.82864 * 19 18 17 41 41 H 1.09006 * 109.70210 * 174.47644 * 19 18 17 42 42 H 1.07999 * 124.62735 * 359.97438 * 24 23 21 43 43 H 1.09004 * 110.36664 * 135.44061 * 25 24 23 44 44 H 1.09003 * 110.36897 * 257.75969 * 25 24 23 45 45 H 1.09005 * 110.97896 * 93.07067 * 26 25 24 46 46 H 1.08995 * 110.98905 * 216.87076 * 26 25 24 47 47 H 1.09000 * 110.36911 * 282.24208 * 27 23 21 48 48 H 1.09008 * 110.36619 * 44.55962 * 27 23 21 49 49 H 1.09002 * 109.59199 * 293.82603 * 28 20 19 50 50 H 1.09001 * 109.71037 * 173.46715 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1409 6 7 2.0180 3.3201 1.5234 7 6 1.6870 3.9366 2.7024 8 1 1.1206 3.4023 3.4507 9 6 2.0804 5.2490 2.9344 10 7 1.7635 5.8397 4.0647 11 14 3.0594 6.1735 1.6398 12 1 2.1270 6.8770 0.7229 13 1 3.9441 7.1649 2.3026 14 1 3.8855 5.2132 0.8646 15 6 1.9954 -0.7659 -1.1376 16 1 3.0849 -0.7344 -1.1245 17 6 1.5251 -2.2188 -1.0366 18 6 2.0992 -3.0249 -2.2040 19 6 1.5870 -2.4408 -3.5243 20 7 1.9094 -1.0079 -3.5642 21 6 2.5847 -0.4847 -4.6067 22 8 2.7461 0.7181 -4.6847 23 6 3.1265 -1.3687 -5.6503 24 6 4.1541 -1.0687 -6.4329 25 6 4.4452 -2.1997 -7.3917 26 6 3.1722 -3.0763 -7.3683 27 6 2.5920 -2.7450 -5.9722 28 6 1.4820 -0.1562 -2.4460 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.5610 1.9274 -0.8308 33 1 3.0797 1.3445 -0.1083 34 1 2.5233 3.8014 0.8496 35 1 2.0378 6.7559 4.2265 36 1 1.8689 -2.6471 -0.0951 37 1 0.4363 -2.2515 -1.0742 38 1 1.7826 -4.0644 -2.1189 39 1 3.1877 -2.9726 -2.1811 40 1 0.5071 -2.5743 -3.5884 41 1 2.0680 -2.9470 -4.3613 42 1 4.7070 -0.1419 -6.3914 43 1 4.6197 -1.8111 -8.3951 44 1 5.3071 -2.7735 -7.0511 45 1 2.4833 -2.7853 -8.1613 46 1 3.4251 -4.1340 -7.4416 47 1 2.9366 -3.4683 -5.2331 48 1 1.5027 -2.7297 -6.0098 49 1 0.3935 -0.1034 -2.4220 50 1 1.8938 0.8455 -2.5685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731719019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:41 Heat of formation + Delta-G solvation = -39.901683 kcal Electronic energy + Delta-G solvation = -29707.714103 eV Core-core repulsion = 25735.363197 eV Total energy + Delta-G solvation = -3972.350906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79377 -40.63847 -39.43726 -38.55693 -36.98274 -35.92166 -33.79727 -33.48753 -31.66759 -30.31539 -29.68226 -29.01550 -27.04955 -26.70456 -25.51448 -23.31231 -22.37634 -21.97235 -21.28097 -20.47404 -20.14453 -19.39452 -18.16432 -17.55761 -17.29688 -16.88320 -16.77929 -16.57481 -16.42512 -15.90156 -15.80616 -15.38897 -15.25376 -14.99040 -14.59600 -14.46749 -14.37319 -14.17136 -14.01664 -13.66395 -13.50955 -13.35508 -13.14109 -12.98325 -12.71289 -12.67935 -12.61879 -12.44503 -12.35153 -12.24407 -12.02242 -12.01397 -11.81187 -11.53852 -11.44409 -11.26956 -10.82514 -10.44282 -10.26704 -10.09511 -9.75596 -9.09937 -8.44366 -6.04341 0.40869 1.27276 1.30831 1.39544 1.85564 1.90607 2.13762 2.18748 2.55136 3.11161 3.17504 3.39019 3.63195 3.68817 3.78596 3.90680 3.99596 4.06887 4.11098 4.15162 4.21822 4.25285 4.30664 4.34428 4.45767 4.49317 4.55842 4.61810 4.68330 4.77362 4.81447 4.84937 4.86497 4.92624 5.02007 5.09652 5.14606 5.22358 5.27736 5.30209 5.38192 5.39931 5.46202 5.50425 5.53156 5.84832 5.95010 6.12290 6.37179 6.56158 6.84854 7.06985 7.35851 7.91884 8.73059 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.002611 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.248886 B =10722.858240 C =12076.520687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.521 5.521 3 C 0.051 3.949 4 C 0.455 3.545 5 O -0.599 6.599 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.060 0.940 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.959 3.041 12 H -0.259 1.259 13 H -0.271 1.271 14 H -0.238 1.238 15 C 0.080 3.920 16 H 0.079 0.921 17 C -0.110 4.110 18 C -0.124 4.124 19 C 0.054 3.946 20 N -0.596 5.596 21 C 0.554 3.446 22 O -0.597 6.597 23 C -0.212 4.212 24 C -0.077 4.077 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.091 4.091 28 C 0.080 3.920 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.387 0.613 35 H 0.279 0.721 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -23.865 -28.669 37.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.244 5.244 3 C -0.080 4.080 4 C 0.243 3.757 5 O -0.483 6.483 6 N -0.235 5.235 7 C -0.454 4.454 8 H 0.078 0.922 9 C -0.211 4.211 10 N -0.572 5.572 11 Si 0.779 3.221 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.162 1.162 15 C -0.029 4.029 16 H 0.097 0.903 17 C -0.148 4.148 18 C -0.163 4.163 19 C -0.066 4.066 20 N -0.327 5.327 21 C 0.346 3.654 22 O -0.480 6.480 23 C -0.215 4.215 24 C -0.096 4.096 25 C -0.140 4.140 26 C -0.158 4.158 27 C -0.127 4.127 28 C -0.045 4.045 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.222 0.778 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.165 0.835 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.120 0.880 47 H 0.132 0.868 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.633 -23.728 -27.529 36.638 hybrid contribution 0.027 2.189 -0.249 2.203 sum 4.660 -21.539 -27.778 35.458 Atomic orbital electron populations 1.22537 0.86697 1.02987 1.00548 1.61873 1.09193 1.11792 1.41561 1.21831 1.02260 0.90274 0.93664 1.20677 0.83078 0.81796 0.90194 1.90504 1.43987 1.65009 1.48823 1.42077 1.51659 1.12589 1.17222 1.19003 1.34451 0.96937 0.95015 0.92214 1.26025 0.98657 0.96942 0.99468 1.69785 1.47180 1.14288 1.25918 0.85442 0.79042 0.79170 0.78403 1.18311 1.19579 1.16169 1.22159 0.99703 0.95172 0.85915 0.90301 1.21618 1.01368 0.91951 0.99891 1.21898 1.01147 1.00569 0.92671 1.23335 1.02504 0.78622 1.02101 1.48002 1.54973 1.10695 1.19044 1.18749 0.77243 0.87332 0.82095 1.90771 1.61263 1.17457 1.78477 1.21844 1.01826 0.98713 0.99098 1.24302 0.93861 0.98490 0.92995 1.21550 0.99953 0.93927 0.98599 1.22571 0.96110 1.01227 0.95880 1.21669 1.01579 0.91228 0.98195 1.22286 1.00072 0.95260 0.86853 0.95137 0.89196 0.92586 0.91382 0.87298 0.77808 0.91095 0.91034 0.90948 0.87285 0.91543 0.90246 0.83474 0.86227 0.89233 0.87998 0.90671 0.87989 0.86784 0.89651 0.90922 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.41 127.69 1.07 1.69 16 2 N -0.52 -16.64 4.49 -901.12 -4.05 -20.68 16 3 C 0.05 1.80 4.90 85.56 0.42 2.21 16 4 C 0.46 21.78 7.51 87.66 0.66 22.44 16 5 O -0.60 -33.88 13.88 -3.07 -0.04 -33.92 16 6 N -0.59 -29.75 5.09 -306.98 -1.56 -31.31 16 7 C -0.32 -19.63 10.16 84.04 0.85 -18.78 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 10 N -0.93 -57.30 13.96 21.67 0.30 -57.00 16 11 Si 0.96 41.06 27.73 68.60 1.90 42.97 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.24 -8.94 6.52 99.48 0.65 -8.29 16 15 C 0.08 1.92 2.37 45.00 0.11 2.03 16 16 H 0.08 2.00 8.03 -2.39 -0.02 1.98 16 17 C -0.11 -1.96 4.93 30.62 0.15 -1.81 16 18 C -0.12 -1.36 6.08 30.67 0.19 -1.17 16 19 C 0.05 0.61 5.78 86.36 0.50 1.11 16 20 N -0.60 -12.19 2.97 -823.17 -2.45 -14.63 16 21 C 0.55 13.68 7.60 86.57 0.66 14.34 16 22 O -0.60 -20.57 16.34 -4.07 -0.07 -20.64 16 23 C -0.21 -3.44 5.83 -18.56 -0.11 -3.55 16 24 C -0.08 -1.12 10.51 24.66 0.26 -0.86 16 25 C -0.10 -0.69 6.80 30.52 0.21 -0.49 16 26 C -0.12 -0.52 7.17 31.74 0.23 -0.30 16 27 C -0.09 -0.64 4.45 30.58 0.14 -0.50 16 28 C 0.08 1.96 5.00 86.37 0.43 2.39 16 29 H 0.03 0.86 6.39 -2.39 -0.02 0.85 16 30 H 0.09 2.30 6.16 -2.39 -0.01 2.28 16 31 H 0.06 2.25 5.88 -2.39 -0.01 2.24 16 32 H 0.07 2.20 7.07 -2.39 -0.02 2.18 16 33 H 0.11 3.42 8.00 -2.39 -0.02 3.40 16 34 H 0.39 16.62 5.76 -92.70 -0.53 16.08 16 35 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.22 6.41 -2.39 -0.02 1.21 16 38 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.15 0.98 2.04 -21.23 -0.04 0.94 16 42 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.35 8.14 -2.38 -0.02 0.34 16 46 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.11 0.33 6.47 -2.39 -0.02 0.32 16 48 H 0.09 0.53 7.50 -2.38 -0.02 0.51 16 49 H 0.07 1.74 6.21 -2.39 -0.01 1.73 16 50 H 0.07 1.98 5.96 -2.39 -0.01 1.97 16 Total: -1.00 -84.53 378.99 0.61 -83.93 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.34 Total: 32.77 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.23 Total: 18.54 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -7.75 Total: -123.64 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.11 Total: -54.56 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.90 Total: 42.97 kcal Total: -84.53 0.61 -83.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731719019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.027 kcal (2) G-P(sol) polarization free energy of solvation -84.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds