Wall clock time and date at job start Tue Mar 31 2020 18:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 111.00257 * 2 1 4 4 C 1.50704 * 109.47080 * 293.95630 * 3 2 1 5 5 O 1.21291 * 120.00349 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99608 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99619 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00122 * 0.02562 * 7 6 4 9 9 C 1.38949 * 119.99834 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00009 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99630 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46882 * 90.00620 * 11 9 7 13 13 H 1.48508 * 109.46818 * 210.00335 * 11 9 7 14 14 H 1.48493 * 109.47424 * 330.00184 * 11 9 7 15 15 C 1.46900 * 111.00186 * 123.95714 * 2 1 3 16 16 H 1.09005 * 109.49938 * 186.10694 * 15 2 1 17 17 C 1.53037 * 109.49804 * 66.04258 * 15 2 1 18 18 C 1.53041 * 109.53710 * 178.65418 * 17 15 2 19 19 C 1.53184 * 109.31519 * 61.36499 * 18 17 15 20 20 N 1.46929 * 108.77590 * 305.36462 * 19 18 17 21 21 C 1.34771 * 120.63194 * 233.58488 * 20 19 18 22 22 O 1.21608 * 120.00159 * 186.18717 * 21 20 19 23 23 C 1.47103 * 119.99948 * 6.19005 * 21 20 19 24 24 C 1.32617 * 124.62054 * 156.53245 * 23 21 20 25 25 C 1.51113 * 110.75939 * 180.26587 * 24 23 21 26 26 C 1.54578 * 104.83744 * 343.40266 * 25 24 23 27 27 C 1.51113 * 124.62106 * 336.83267 * 23 21 20 28 28 C 1.46925 * 118.73506 * 53.86082 * 20 19 18 29 29 H 1.09007 * 109.46493 * 296.04612 * 1 2 3 30 30 H 1.08995 * 109.47016 * 56.04030 * 1 2 3 31 31 H 1.08999 * 109.47050 * 176.04513 * 1 2 3 32 32 H 1.09003 * 109.47103 * 53.95390 * 3 2 1 33 33 H 1.08995 * 109.47637 * 173.95680 * 3 2 1 34 34 H 0.97000 * 120.00308 * 0.02562 * 6 4 3 35 35 H 0.97002 * 119.99870 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46188 * 58.63301 * 17 15 2 37 37 H 1.09001 * 109.44773 * 298.66772 * 17 15 2 38 38 H 1.09008 * 109.49467 * 301.41066 * 18 17 15 39 39 H 1.09005 * 109.49576 * 181.32230 * 18 17 15 40 40 H 1.09004 * 109.58563 * 185.57743 * 19 18 17 41 41 H 1.09005 * 109.70364 * 65.22196 * 19 18 17 42 42 H 1.07995 * 124.61878 * 0.24410 * 24 23 21 43 43 H 1.09000 * 110.36152 * 224.56316 * 25 24 23 44 44 H 1.09001 * 110.36411 * 102.24127 * 25 24 23 45 45 H 1.09007 * 110.98105 * 266.92477 * 26 25 24 46 46 H 1.09000 * 111.01498 * 143.14287 * 26 25 24 47 47 H 1.08999 * 110.36413 * 315.17432 * 27 23 21 48 48 H 1.09005 * 110.36538 * 77.38259 * 27 23 21 49 49 H 1.09004 * 109.58902 * 65.92619 * 28 20 19 50 50 H 1.09005 * 109.58566 * 186.35080 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0046 1.4457 -2.1408 6 7 2.0182 3.3202 -1.5232 7 6 1.6924 3.9348 -2.7047 8 1 1.1301 3.3989 -3.4551 9 6 2.0849 5.2474 -2.9363 10 7 2.7687 5.8996 -2.0231 11 14 1.6404 6.0850 -4.5458 12 1 0.3277 6.7646 -4.4041 13 1 2.6823 7.0869 -4.8866 14 1 1.5581 5.0695 -5.6261 15 6 1.9955 -0.7660 1.1375 16 1 3.0798 -0.6606 1.1766 17 6 1.6317 -2.2432 0.9708 18 6 2.2085 -3.0472 2.1383 19 6 1.5986 -2.5442 3.4503 20 7 1.8184 -1.0948 3.5490 21 6 2.4077 -0.5621 4.6377 22 8 2.4829 0.6455 4.7589 23 6 2.9600 -1.4417 5.6795 24 6 3.9141 -1.0929 6.5320 25 6 4.2468 -2.2374 7.4610 26 6 3.0556 -3.2136 7.3289 27 6 2.5219 -2.8678 5.9200 28 6 1.3780 -0.2365 2.4407 29 1 -0.3632 0.4513 0.9234 30 1 -0.3633 0.5740 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 2.5235 3.8014 -0.8495 35 1 3.0430 6.8159 -2.1849 36 1 2.0456 -2.6156 0.0338 37 1 0.5471 -2.3504 0.9568 38 1 3.2908 -2.9202 2.1679 39 1 1.9691 -4.1025 2.0067 40 1 2.0780 -3.0446 4.2917 41 1 0.5288 -2.7532 3.4622 42 1 4.3889 -0.1233 6.5583 43 1 4.3325 -1.8801 8.4872 44 1 5.1715 -2.7228 7.1489 45 1 2.3021 -3.0154 8.0912 46 1 3.3920 -4.2493 7.3754 47 1 1.4345 -2.9393 5.8982 48 1 2.9600 -3.5302 5.1734 49 1 0.2906 -0.2610 2.3694 50 1 1.7119 0.7863 2.6157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731719020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:45 Heat of formation + Delta-G solvation = -20.225206 kcal Electronic energy + Delta-G solvation = -29604.977900 eV Core-core repulsion = 25633.480229 eV Total energy + Delta-G solvation = -3971.497670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87233 -39.15141 -38.11307 -37.53022 -35.73622 -33.82665 -32.56362 -31.20464 -30.73145 -29.69135 -28.61911 -27.74009 -25.85723 -25.35927 -24.11074 -22.40851 -21.53946 -21.39922 -19.47934 -19.05385 -18.64934 -17.78205 -17.07556 -16.49024 -16.23926 -15.88740 -15.38942 -15.21012 -14.95224 -14.66692 -14.48567 -14.29255 -13.78966 -13.76037 -13.41019 -13.29516 -13.09763 -13.06933 -12.77713 -12.63543 -12.42263 -12.12166 -12.04118 -11.76178 -11.68657 -11.52019 -11.41497 -11.30759 -11.24462 -10.97554 -10.80776 -10.56047 -10.46910 -10.35884 -10.17583 -9.94651 -9.43618 -9.34493 -8.93450 -8.35647 -7.92527 -7.72974 -6.37067 -3.77968 1.14904 2.77383 3.02281 3.20758 3.29058 3.35055 3.94713 3.98703 4.00940 4.11933 4.26307 4.42378 4.50425 4.70512 4.72896 4.75333 4.84571 4.92748 5.07306 5.12909 5.16768 5.17971 5.24417 5.28800 5.31674 5.38447 5.43876 5.52220 5.53588 5.59647 5.65359 5.69302 5.73930 5.80564 5.83911 5.95677 5.99881 6.02433 6.17268 6.18014 6.19377 6.31605 6.35280 6.59156 7.23932 7.30558 7.41103 7.59336 8.03813 8.10826 8.66516 9.22422 9.59401 10.11175 10.80700 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.002339 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.580968 B =11965.899068 C =13003.893414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.505 5.505 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.073 3.927 16 H 0.083 0.917 17 C -0.111 4.111 18 C -0.133 4.133 19 C 0.059 3.941 20 N -0.599 5.599 21 C 0.564 3.436 22 O -0.540 6.540 23 C -0.192 4.192 24 C -0.076 4.076 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.094 4.094 28 C 0.075 3.925 29 H 0.018 0.982 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -21.134 19.803 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.227 5.227 3 C -0.089 4.089 4 C 0.231 3.769 5 O -0.463 6.463 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.037 4.037 16 H 0.101 0.899 17 C -0.149 4.149 18 C -0.172 4.172 19 C -0.063 4.063 20 N -0.332 5.332 21 C 0.353 3.647 22 O -0.418 6.418 23 C -0.195 4.195 24 C -0.096 4.096 25 C -0.144 4.144 26 C -0.164 4.164 27 C -0.130 4.130 28 C -0.049 4.049 29 H 0.037 0.963 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.091 0.909 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.249 -20.917 18.814 28.161 hybrid contribution -0.161 1.331 0.266 1.366 sum 1.088 -19.586 19.080 27.365 Atomic orbital electron populations 1.22642 0.86984 1.02080 1.01599 1.61874 1.08757 1.12949 1.39153 1.21916 1.00759 0.89011 0.97237 1.19699 0.85423 0.82926 0.88861 1.90476 1.43969 1.64692 1.47123 1.41878 1.49410 1.10764 1.18052 1.19691 1.32931 0.95421 0.94716 0.87919 1.25269 0.96867 0.96676 0.99223 1.69621 1.38048 1.12188 1.34421 0.85860 0.77990 0.78892 0.81547 1.20457 1.20952 1.19426 1.22202 0.99854 0.94207 0.87400 0.89857 1.21560 1.01227 0.93541 0.98536 1.21913 1.01005 0.99782 0.94456 1.22992 1.01587 0.80603 1.01100 1.47895 1.59392 1.07870 1.18052 1.18058 0.77658 0.87540 0.81415 1.90817 1.58344 1.14701 1.77974 1.21773 1.01954 0.96614 0.99203 1.24034 0.94043 0.98743 0.92756 1.21482 0.99215 0.94264 0.99424 1.22512 0.97661 0.99531 0.96689 1.21574 1.01595 0.92781 0.97023 1.22606 0.99899 0.96093 0.86282 0.96314 0.88485 0.91941 0.93265 0.89443 0.77457 0.91890 0.90459 0.91595 0.91409 0.90473 0.85846 0.91571 0.84487 0.90129 0.89566 0.90710 0.90335 0.90244 0.88898 0.90889 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 8.43 60.07 0.51 0.74 16 2 N -0.50 -8.57 4.45 -235.91 -1.05 -9.62 16 3 C 0.04 0.80 5.04 -4.97 -0.03 0.77 16 4 C 0.45 10.80 7.48 -10.98 -0.08 10.72 16 5 O -0.58 -15.74 13.91 5.55 0.08 -15.66 16 6 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -25.19 13.05 55.50 0.72 -24.47 16 11 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.07 0.99 2.35 -67.37 -0.16 0.83 16 16 H 0.08 1.18 7.93 -51.93 -0.41 0.76 16 17 C -0.11 -1.19 5.06 -26.69 -0.13 -1.33 16 18 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 19 C 0.06 0.47 5.76 -3.71 -0.02 0.45 16 20 N -0.60 -7.01 2.97 -173.89 -0.52 -7.52 16 21 C 0.56 7.49 7.61 -12.67 -0.10 7.40 16 22 O -0.54 -9.47 16.32 5.27 0.09 -9.38 16 23 C -0.19 -1.83 5.85 -102.73 -0.60 -2.44 16 24 C -0.08 -0.65 10.50 -36.01 -0.38 -1.02 16 25 C -0.11 -0.57 6.80 -26.85 -0.18 -0.75 16 26 C -0.13 -0.58 7.16 -25.08 -0.18 -0.75 16 27 C -0.09 -0.55 4.43 -26.86 -0.12 -0.66 16 28 C 0.08 1.01 5.00 -3.49 -0.02 1.00 16 29 H 0.02 0.28 6.10 -51.93 -0.32 -0.04 16 30 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 31 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 32 H 0.05 0.89 7.20 -51.93 -0.37 0.52 16 33 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 34 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.70 6.62 -51.93 -0.34 0.35 16 38 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.12 0.74 2.01 -74.57 -0.15 0.59 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.43 7.44 -51.93 -0.39 0.05 16 48 H 0.09 0.41 6.50 -51.93 -0.34 0.08 16 49 H 0.07 0.97 6.06 -51.93 -0.31 0.66 16 50 H 0.09 1.47 6.10 -51.93 -0.32 1.15 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -34.19 382.36 -9.53 -43.73 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.64 Total: 9.91 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.89 Total: 5.61 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.90 Total: -56.42 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.16 Total: -25.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.19 -9.53 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731719020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.500 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds