Wall clock time and date at job start Tue Mar 31 2020 18:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 111.00257 * 2 1 4 4 C 1.50704 * 109.47080 * 293.95630 * 3 2 1 5 5 O 1.21291 * 120.00349 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99608 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99619 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00122 * 0.02562 * 7 6 4 9 9 C 1.38949 * 119.99834 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00009 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99630 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46882 * 90.00620 * 11 9 7 13 13 H 1.48508 * 109.46818 * 210.00335 * 11 9 7 14 14 H 1.48493 * 109.47424 * 330.00184 * 11 9 7 15 15 C 1.46900 * 111.00186 * 123.95714 * 2 1 3 16 16 H 1.09005 * 109.49938 * 186.10694 * 15 2 1 17 17 C 1.53037 * 109.49804 * 66.04258 * 15 2 1 18 18 C 1.53041 * 109.53710 * 178.65418 * 17 15 2 19 19 C 1.53184 * 109.31519 * 61.36499 * 18 17 15 20 20 N 1.46929 * 108.77590 * 305.36462 * 19 18 17 21 21 C 1.34771 * 120.63194 * 233.58488 * 20 19 18 22 22 O 1.21608 * 120.00159 * 186.18717 * 21 20 19 23 23 C 1.47103 * 119.99948 * 6.19005 * 21 20 19 24 24 C 1.32617 * 124.62054 * 156.53245 * 23 21 20 25 25 C 1.51113 * 110.75939 * 180.26587 * 24 23 21 26 26 C 1.54578 * 104.83744 * 343.40266 * 25 24 23 27 27 C 1.51113 * 124.62106 * 336.83267 * 23 21 20 28 28 C 1.46925 * 118.73506 * 53.86082 * 20 19 18 29 29 H 1.09007 * 109.46493 * 296.04612 * 1 2 3 30 30 H 1.08995 * 109.47016 * 56.04030 * 1 2 3 31 31 H 1.08999 * 109.47050 * 176.04513 * 1 2 3 32 32 H 1.09003 * 109.47103 * 53.95390 * 3 2 1 33 33 H 1.08995 * 109.47637 * 173.95680 * 3 2 1 34 34 H 0.97000 * 120.00308 * 0.02562 * 6 4 3 35 35 H 0.97002 * 119.99870 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46188 * 58.63301 * 17 15 2 37 37 H 1.09001 * 109.44773 * 298.66772 * 17 15 2 38 38 H 1.09008 * 109.49467 * 301.41066 * 18 17 15 39 39 H 1.09005 * 109.49576 * 181.32230 * 18 17 15 40 40 H 1.09004 * 109.58563 * 185.57743 * 19 18 17 41 41 H 1.09005 * 109.70364 * 65.22196 * 19 18 17 42 42 H 1.07995 * 124.61878 * 0.24410 * 24 23 21 43 43 H 1.09000 * 110.36152 * 224.56316 * 25 24 23 44 44 H 1.09001 * 110.36411 * 102.24127 * 25 24 23 45 45 H 1.09007 * 110.98105 * 266.92477 * 26 25 24 46 46 H 1.09000 * 111.01498 * 143.14287 * 26 25 24 47 47 H 1.08999 * 110.36413 * 315.17432 * 27 23 21 48 48 H 1.09005 * 110.36538 * 77.38259 * 27 23 21 49 49 H 1.09004 * 109.58902 * 65.92619 * 28 20 19 50 50 H 1.09005 * 109.58566 * 186.35080 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0046 1.4457 -2.1408 6 7 2.0182 3.3202 -1.5232 7 6 1.6924 3.9348 -2.7047 8 1 1.1301 3.3989 -3.4551 9 6 2.0849 5.2474 -2.9363 10 7 2.7687 5.8996 -2.0231 11 14 1.6404 6.0850 -4.5458 12 1 0.3277 6.7646 -4.4041 13 1 2.6823 7.0869 -4.8866 14 1 1.5581 5.0695 -5.6261 15 6 1.9955 -0.7660 1.1375 16 1 3.0798 -0.6606 1.1766 17 6 1.6317 -2.2432 0.9708 18 6 2.2085 -3.0472 2.1383 19 6 1.5986 -2.5442 3.4503 20 7 1.8184 -1.0948 3.5490 21 6 2.4077 -0.5621 4.6377 22 8 2.4829 0.6455 4.7589 23 6 2.9600 -1.4417 5.6795 24 6 3.9141 -1.0929 6.5320 25 6 4.2468 -2.2374 7.4610 26 6 3.0556 -3.2136 7.3289 27 6 2.5219 -2.8678 5.9200 28 6 1.3780 -0.2365 2.4407 29 1 -0.3632 0.4513 0.9234 30 1 -0.3633 0.5740 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 2.5235 3.8014 -0.8495 35 1 3.0430 6.8159 -2.1849 36 1 2.0456 -2.6156 0.0338 37 1 0.5471 -2.3504 0.9568 38 1 3.2908 -2.9202 2.1679 39 1 1.9691 -4.1025 2.0067 40 1 2.0780 -3.0446 4.2917 41 1 0.5288 -2.7532 3.4622 42 1 4.3889 -0.1233 6.5583 43 1 4.3325 -1.8801 8.4872 44 1 5.1715 -2.7228 7.1489 45 1 2.3021 -3.0154 8.0912 46 1 3.3920 -4.2493 7.3754 47 1 1.4345 -2.9393 5.8982 48 1 2.9600 -3.5302 5.1734 49 1 0.2906 -0.2610 2.3694 50 1 1.7119 0.7863 2.6157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731719020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:44 Heat of formation + Delta-G solvation = -44.352033 kcal Electronic energy + Delta-G solvation = -29606.024117 eV Core-core repulsion = 25633.480229 eV Total energy + Delta-G solvation = -3972.543888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78795 -40.54136 -39.37199 -38.56216 -36.96769 -35.87296 -33.52466 -33.28647 -31.65980 -30.30726 -29.58988 -28.97973 -27.05727 -26.74608 -25.61713 -23.33033 -22.40385 -21.97503 -21.01321 -20.44297 -19.86484 -19.39982 -18.15911 -17.56604 -17.29906 -16.84261 -16.61927 -16.54206 -16.47802 -15.91796 -15.83500 -15.38320 -15.28248 -15.16925 -14.50449 -14.41833 -14.25915 -14.01773 -13.68801 -13.56593 -13.48501 -13.33582 -13.05325 -12.98569 -12.70564 -12.66885 -12.60791 -12.44100 -12.34654 -12.24196 -12.12827 -12.01922 -11.82684 -11.53811 -11.45269 -11.26848 -10.81504 -10.35328 -10.10124 -10.03185 -9.75861 -9.08968 -8.48325 -5.97873 0.39667 1.36319 1.39497 1.53248 1.85766 2.00731 2.13606 2.26442 2.70311 3.17439 3.33603 3.39408 3.62503 3.69208 3.78077 3.92149 4.02566 4.07184 4.13635 4.19597 4.23610 4.25932 4.31283 4.41798 4.47230 4.50990 4.55636 4.62784 4.68401 4.77197 4.81959 4.84233 4.86205 4.92027 5.02038 5.09647 5.13682 5.22632 5.28236 5.30179 5.37436 5.39716 5.39918 5.46163 5.52302 5.82806 6.01112 6.14135 6.37026 6.56888 7.06617 7.09681 7.52221 8.07268 8.69357 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.002339 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.580968 B =11965.899068 C =13003.893414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.518 5.518 3 C 0.055 3.945 4 C 0.445 3.555 5 O -0.609 6.609 6 N -0.576 5.576 7 C -0.331 4.331 8 H 0.082 0.918 9 C -0.017 4.017 10 N -0.923 5.923 11 Si 0.997 3.003 12 H -0.270 1.270 13 H -0.271 1.271 14 H -0.271 1.271 15 C 0.079 3.921 16 H 0.075 0.925 17 C -0.107 4.107 18 C -0.125 4.125 19 C 0.053 3.947 20 N -0.596 5.596 21 C 0.552 3.448 22 O -0.599 6.599 23 C -0.212 4.212 24 C -0.077 4.077 25 C -0.103 4.103 26 C -0.120 4.120 27 C -0.091 4.091 28 C 0.081 3.919 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.278 0.722 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.076 0.924 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 -24.108 21.106 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.241 5.241 3 C -0.076 4.076 4 C 0.232 3.768 5 O -0.495 6.495 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.100 0.900 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.820 3.180 12 H -0.196 1.196 13 H -0.195 1.195 14 H -0.195 1.195 15 C -0.030 4.030 16 H 0.093 0.907 17 C -0.145 4.145 18 C -0.163 4.163 19 C -0.067 4.067 20 N -0.327 5.327 21 C 0.344 3.656 22 O -0.482 6.482 23 C -0.215 4.215 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.157 4.157 27 C -0.127 4.127 28 C -0.044 4.044 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.122 0.878 47 H 0.105 0.895 48 H 0.132 0.868 49 H 0.094 0.906 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.396 -23.944 20.136 31.316 hybrid contribution -0.188 2.242 -0.095 2.252 sum 1.209 -21.701 20.041 29.564 Atomic orbital electron populations 1.22523 0.86685 1.03108 1.00283 1.61885 1.09184 1.11631 1.41390 1.21732 1.01560 0.90199 0.94112 1.20575 0.83870 0.82258 0.90119 1.90450 1.44990 1.65275 1.48774 1.41971 1.50012 1.11560 1.17735 1.19691 1.34453 0.96419 0.95527 0.89993 1.26125 0.96220 0.96655 1.02616 1.69697 1.38178 1.12649 1.35925 0.84876 0.78225 0.77766 0.77143 1.19576 1.19545 1.19524 1.22239 0.99127 0.95627 0.86012 0.90697 1.21574 1.01804 0.91375 0.99784 1.21908 1.00623 1.01031 0.92735 1.23378 1.02939 0.78081 1.02271 1.48027 1.58454 1.09375 1.16893 1.18794 0.77122 0.87376 0.82297 1.90777 1.60729 1.17354 1.79352 1.21847 1.02738 0.98332 0.98554 1.24321 0.93295 0.99152 0.92934 1.21550 1.00353 0.93123 0.98939 1.22535 0.97046 1.00528 0.95606 1.21631 1.02236 0.90209 0.98577 1.22364 0.99846 0.95050 0.87120 0.95299 0.92391 0.89290 0.92552 0.88259 0.77292 0.91311 0.91020 0.90962 0.91640 0.87089 0.83344 0.90125 0.86374 0.89171 0.87967 0.90635 0.87849 0.89521 0.86794 0.90605 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 8.43 127.69 1.08 1.78 16 2 N -0.52 -17.76 4.45 -900.28 -4.01 -21.76 16 3 C 0.06 2.17 5.04 85.56 0.43 2.60 16 4 C 0.44 22.45 7.48 87.66 0.66 23.11 16 5 O -0.61 -34.50 13.91 -3.06 -0.04 -34.54 16 6 N -0.58 -31.35 5.29 -306.97 -1.62 -32.97 16 7 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 10 N -0.92 -52.15 13.05 21.66 0.28 -51.86 16 11 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 C 0.08 2.10 2.35 45.14 0.11 2.21 16 16 H 0.07 2.12 7.93 -2.38 -0.02 2.10 16 17 C -0.11 -2.08 5.06 30.62 0.15 -1.92 16 18 C -0.12 -1.53 6.08 30.67 0.19 -1.35 16 19 C 0.05 0.67 5.76 86.36 0.50 1.17 16 20 N -0.60 -13.47 2.97 -822.33 -2.44 -15.91 16 21 C 0.55 14.88 7.61 86.57 0.66 15.54 16 22 O -0.60 -22.36 16.32 -4.06 -0.07 -22.42 16 23 C -0.21 -3.79 5.85 -18.57 -0.11 -3.90 16 24 C -0.08 -1.25 10.50 24.66 0.26 -1.00 16 25 C -0.10 -0.80 6.80 30.52 0.21 -0.60 16 26 C -0.12 -0.62 7.16 31.67 0.23 -0.39 16 27 C -0.09 -0.74 4.43 30.51 0.14 -0.60 16 28 C 0.08 2.20 5.00 86.51 0.43 2.64 16 29 H 0.03 0.88 6.10 -2.38 -0.01 0.86 16 30 H 0.06 2.39 5.82 -2.39 -0.01 2.38 16 31 H 0.09 2.41 6.50 -2.39 -0.02 2.39 16 32 H 0.06 2.13 7.20 -2.39 -0.02 2.12 16 33 H 0.10 3.63 7.93 -2.39 -0.02 3.61 16 34 H 0.39 20.79 7.90 -92.71 -0.73 20.06 16 35 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.32 6.62 -2.39 -0.02 1.31 16 38 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.15 1.17 2.01 -23.66 -0.05 1.13 16 41 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.09 0.61 7.44 -2.39 -0.02 0.60 16 48 H 0.11 0.46 6.50 -2.38 -0.02 0.44 16 49 H 0.08 1.99 6.06 -2.39 -0.01 1.98 16 50 H 0.06 2.03 6.10 -2.38 -0.01 2.01 16 Total: -1.00 -78.84 382.36 0.53 -78.32 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.19 Total: 34.68 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 6.20 Total: 20.13 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -7.79 Total: -122.50 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -0.11 Total: -56.96 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.84 0.53 -78.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731719020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.966 kcal (2) G-P(sol) polarization free energy of solvation -78.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds