Wall clock time and date at job start Tue Mar 31 2020 18:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00042 * 2 1 4 4 C 1.50700 * 109.46881 * 66.04641 * 3 2 1 5 5 O 1.21298 * 120.00261 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99893 * 180.02562 * 4 3 2 7 7 C 1.37093 * 119.99796 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00474 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99768 * 179.97438 * 7 6 4 10 10 N 1.31414 * 120.00271 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00008 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47415 * 89.99739 * 11 9 7 13 13 H 1.48501 * 109.46917 * 209.99863 * 11 9 7 14 14 H 1.48497 * 109.46886 * 329.99597 * 11 9 7 15 15 C 1.46903 * 110.99771 * 236.04709 * 2 1 3 16 16 C 1.53001 * 109.46521 * 199.75968 * 15 2 1 17 17 H 1.08997 * 110.89103 * 307.90808 * 16 15 2 18 18 C 1.55163 * 111.03820 * 71.81340 * 16 15 2 19 19 C 1.54327 * 103.02195 * 153.39018 * 18 16 15 20 20 N 1.47025 * 107.27067 * 338.14220 * 19 18 16 21 21 C 1.34771 * 125.65175 * 178.85176 * 20 19 18 22 22 O 1.21283 * 119.99711 * 179.69177 * 21 20 19 23 23 C 1.50700 * 120.00114 * 359.68459 * 21 20 19 24 24 H 1.08998 * 115.54728 * 325.73109 * 23 21 20 25 25 C 1.53003 * 117.49434 * 111.39252 * 23 21 20 26 26 C 1.52992 * 117.49734 * 180.02562 * 23 21 20 27 27 C 1.52992 * 138.58647 * 121.62874 * 26 23 21 28 28 C 1.52986 * 138.59240 * 23.40727 * 26 23 21 29 29 C 1.47431 * 108.69699 * 358.58253 * 20 19 18 30 30 H 1.08999 * 109.47296 * 188.99590 * 1 2 3 31 31 H 1.08997 * 109.47574 * 308.99617 * 1 2 3 32 32 H 1.09000 * 109.46814 * 68.99788 * 1 2 3 33 33 H 1.08994 * 109.46996 * 186.04210 * 3 2 1 34 34 H 1.09004 * 109.47086 * 306.04794 * 3 2 1 35 35 H 0.97004 * 119.99896 * 359.97438 * 6 4 3 36 36 H 0.97001 * 120.00111 * 180.02562 * 10 9 7 37 37 H 1.08991 * 109.47259 * 79.76400 * 15 2 1 38 38 H 1.08994 * 109.47160 * 319.75939 * 15 2 1 39 39 H 1.09000 * 110.72194 * 271.95245 * 18 16 15 40 40 H 1.09001 * 110.71921 * 35.22343 * 18 16 15 41 41 H 1.09006 * 109.99635 * 218.66569 * 19 18 16 42 42 H 1.09002 * 109.78046 * 97.49645 * 19 18 16 43 43 H 1.09002 * 117.50161 * 214.97552 * 25 23 21 44 44 H 1.09000 * 117.50117 * 359.97438 * 25 23 21 45 45 H 1.09002 * 117.49716 * 336.58733 * 27 26 23 46 46 H 1.09004 * 117.50385 * 121.61520 * 27 26 23 47 47 H 1.08996 * 117.50387 * 238.38159 * 28 26 23 48 48 H 1.08997 * 117.49827 * 23.38002 * 28 26 23 49 49 H 1.09003 * 110.36498 * 143.19471 * 29 20 19 50 50 H 1.08994 * 110.36697 * 265.40906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0046 1.4455 2.1408 6 7 2.0180 3.3202 1.5233 7 6 1.6923 3.9346 2.7048 8 1 1.1300 3.3988 3.4552 9 6 2.0856 5.2469 2.9368 10 7 1.7730 5.8362 4.0691 11 14 3.0576 6.1741 1.6387 12 1 2.1202 6.8783 0.7274 13 1 3.9447 7.1654 2.2987 14 1 3.8806 5.2157 0.8582 15 6 1.9954 -0.7660 -1.1376 16 6 3.4456 -1.1647 -0.8566 17 1 4.0394 -0.2960 -0.5722 18 6 3.5189 -2.2686 0.2313 19 6 4.8386 -2.9967 -0.1005 20 7 5.1468 -2.7204 -1.5113 21 6 6.2318 -3.1598 -2.1790 22 8 6.3816 -2.8735 -3.3480 23 6 7.2592 -4.0067 -1.4730 24 1 7.4196 -3.7715 -0.4208 25 6 7.3769 -5.4726 -1.8951 26 6 8.4685 -4.4738 -2.2853 27 6 9.9938 -4.3647 -2.2382 28 6 9.2440 -4.0515 -3.5346 29 6 4.0688 -1.8882 -2.0763 30 1 -0.3634 -1.0150 0.1607 31 1 -0.3634 0.6466 0.7986 32 1 -0.3633 0.3683 -0.9594 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9274 -0.8309 35 1 2.5234 3.8014 0.8495 36 1 2.0473 6.7524 4.2309 37 1 1.9551 -0.1532 -2.0381 38 1 1.3933 -1.6631 -1.2814 39 1 3.5592 -1.8269 1.2270 40 1 2.6738 -2.9516 0.1452 41 1 4.7202 -4.0699 0.0497 42 1 5.6389 -2.6175 0.5349 43 1 7.6154 -6.2018 -1.1208 44 1 6.7111 -5.8246 -2.6831 45 1 10.4216 -3.5259 -1.6890 46 1 10.5639 -5.2929 -2.1981 47 1 9.3209 -4.7736 -4.3474 48 1 9.1783 -3.0069 -3.8386 49 1 4.4785 -1.1627 -2.7791 50 1 3.3249 -2.5143 -2.5689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732076224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:07 Heat of formation + Delta-G solvation = 8.557221 kcal Electronic energy + Delta-G solvation = -28640.545055 eV Core-core repulsion = 24670.295485 eV Total energy + Delta-G solvation = -3970.249571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51164 -39.09436 -38.40777 -37.28122 -36.15042 -33.93699 -33.10244 -31.99550 -31.68134 -29.66484 -28.24514 -26.96827 -24.84425 -24.23122 -22.77757 -22.71395 -22.05186 -20.37165 -20.21644 -19.33444 -18.75942 -18.23687 -17.50563 -16.71404 -15.94013 -15.71579 -15.34344 -15.31678 -15.24104 -15.03361 -14.58775 -14.48221 -13.85927 -13.78270 -13.65935 -13.39244 -13.12441 -12.83433 -12.68055 -12.51953 -12.46452 -12.09402 -12.03088 -11.79693 -11.75243 -11.61824 -11.37164 -11.20134 -11.06657 -10.93880 -10.62348 -10.60287 -10.56049 -10.46956 -10.34608 -9.98723 -9.94455 -9.54404 -8.86194 -8.56265 -8.19106 -7.98677 -6.32146 -3.83454 2.23138 2.61681 3.01927 3.05941 3.14462 3.35494 3.42512 3.72708 3.84292 3.91524 4.09280 4.24301 4.41070 4.44008 4.55299 4.62850 4.73826 4.87636 4.99587 5.06148 5.11596 5.18592 5.19473 5.26842 5.29247 5.30020 5.32643 5.36024 5.48122 5.49387 5.54358 5.57049 5.61164 5.62950 5.69004 5.77835 5.84380 5.85174 5.87443 5.97069 5.99483 6.11781 6.19523 6.45647 7.13880 7.27075 7.29307 7.57630 7.95748 8.13621 8.59306 8.94376 9.41680 9.82657 10.80916 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.002220 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.629934 B =12608.866912 C =13709.654220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.516 5.516 3 C 0.040 3.960 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.592 5.592 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.066 3.934 16 C -0.096 4.096 17 H 0.087 0.913 18 C -0.114 4.114 19 C 0.097 3.903 20 N -0.615 5.615 21 C 0.556 3.444 22 O -0.537 6.537 23 C -0.138 4.138 24 H 0.124 0.876 25 C -0.099 4.099 26 C -0.203 4.203 27 C -0.129 4.129 28 C -0.113 4.113 29 C 0.112 3.888 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.014 0.986 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.868 -20.629 -14.188 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.240 5.240 3 C -0.092 4.092 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.231 5.231 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.705 3.295 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.063 4.063 16 C -0.116 4.116 17 H 0.106 0.894 18 C -0.152 4.152 19 C -0.026 4.026 20 N -0.349 5.349 21 C 0.345 3.655 22 O -0.414 6.414 23 C -0.159 4.159 24 H 0.142 0.858 25 C -0.136 4.136 26 C -0.203 4.203 27 C -0.166 4.166 28 C -0.150 4.150 29 C -0.011 4.011 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.095 0.905 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.736 -20.944 -13.700 27.232 hybrid contribution 0.489 1.425 -1.480 2.112 sum 11.225 -19.519 -15.179 27.155 Atomic orbital electron populations 1.22523 0.86318 1.02818 1.00755 1.61509 1.08698 1.12411 1.41334 1.21959 1.00838 0.89471 0.96886 1.19641 0.85115 0.82385 0.88992 1.90531 1.42617 1.64104 1.46801 1.42233 1.50937 1.12039 1.17931 1.19415 1.33684 0.96200 0.93944 0.86260 1.25037 0.97891 0.96533 0.96721 1.69620 1.45794 1.13545 1.23186 0.86688 0.80506 0.80571 0.81722 1.19670 1.20176 1.19497 1.22029 0.94194 0.98210 0.91856 1.22368 0.96467 0.98379 0.94369 0.89439 1.22582 0.95465 0.96685 1.00445 1.22190 0.98529 1.00326 0.81525 1.48424 1.21949 1.52061 1.12488 1.19334 0.80475 0.79631 0.86062 1.90696 1.76536 1.57959 1.16230 1.21934 0.96491 0.97764 0.99679 0.85812 1.22656 0.98734 0.89858 1.02388 1.21172 0.90316 1.04381 1.04461 1.22776 0.89908 1.03053 1.00856 1.22599 0.99492 1.02502 0.90424 1.22231 0.88921 0.93710 0.96262 0.91935 0.88648 0.96750 0.89391 0.93376 0.79762 0.91627 0.94444 0.90446 0.88865 0.90488 0.91259 0.91328 0.87495 0.88133 0.88453 0.88267 0.88522 0.88190 0.90483 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.15 60.07 0.55 0.90 16 2 N -0.52 -7.57 4.36 -244.37 -1.07 -8.64 16 3 C 0.04 0.64 5.27 -4.97 -0.03 0.62 16 4 C 0.45 9.96 7.42 -10.98 -0.08 9.88 16 5 O -0.56 -14.37 13.96 5.54 0.08 -14.29 16 6 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 7 C -0.30 -8.46 10.16 -14.94 -0.15 -8.62 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 11 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 15 C 0.07 0.72 4.45 -3.82 -0.02 0.70 16 16 C -0.10 -0.99 3.09 -88.47 -0.27 -1.27 16 17 H 0.09 1.01 6.71 -51.93 -0.35 0.66 16 18 C -0.11 -1.08 6.35 -24.89 -0.16 -1.24 16 19 C 0.10 0.82 6.31 -3.06 -0.02 0.80 16 20 N -0.62 -6.51 3.33 -170.51 -0.57 -7.08 16 21 C 0.56 6.69 7.63 -10.99 -0.08 6.61 16 22 O -0.54 -8.27 16.50 5.55 0.09 -8.18 16 23 C -0.14 -1.27 5.54 -91.77 -0.51 -1.78 16 24 H 0.12 0.95 7.67 -51.93 -0.40 0.55 16 25 C -0.10 -0.75 10.24 -26.72 -0.27 -1.03 16 26 C -0.20 -1.83 5.05 -154.51 -0.78 -2.61 16 27 C -0.13 -0.92 10.53 -26.73 -0.28 -1.21 16 28 C -0.11 -1.00 10.16 -26.74 -0.27 -1.27 16 29 C 0.11 1.15 6.37 -2.52 -0.02 1.13 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.76 5.79 -51.93 -0.30 1.46 16 32 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 33 H 0.09 1.27 6.59 -51.93 -0.34 0.92 16 34 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 37 H 0.04 0.39 8.00 -51.93 -0.42 -0.03 16 38 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.55 7.97 -51.93 -0.41 0.13 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 50 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 LS Contribution 404.42 15.07 6.09 6.09 Total: -1.00 -33.90 404.42 -10.16 -44.07 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.31 Total: 9.52 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.49 Total: 2.64 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.91 Total: -54.42 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.90 -10.16 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732076224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.622 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds