Wall clock time and date at job start Tue Mar 31 2020 18:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00042 * 2 1 4 4 C 1.50700 * 109.46881 * 66.04641 * 3 2 1 5 5 O 1.21298 * 120.00261 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99893 * 180.02562 * 4 3 2 7 7 C 1.37093 * 119.99796 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00474 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99768 * 179.97438 * 7 6 4 10 10 N 1.31414 * 120.00271 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00008 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47415 * 89.99739 * 11 9 7 13 13 H 1.48501 * 109.46917 * 209.99863 * 11 9 7 14 14 H 1.48497 * 109.46886 * 329.99597 * 11 9 7 15 15 C 1.46903 * 110.99771 * 236.04709 * 2 1 3 16 16 C 1.53001 * 109.46521 * 199.75968 * 15 2 1 17 17 H 1.08997 * 110.89103 * 307.90808 * 16 15 2 18 18 C 1.55163 * 111.03820 * 71.81340 * 16 15 2 19 19 C 1.54327 * 103.02195 * 153.39018 * 18 16 15 20 20 N 1.47025 * 107.27067 * 338.14220 * 19 18 16 21 21 C 1.34771 * 125.65175 * 178.85176 * 20 19 18 22 22 O 1.21283 * 119.99711 * 179.69177 * 21 20 19 23 23 C 1.50700 * 120.00114 * 359.68459 * 21 20 19 24 24 H 1.08998 * 115.54728 * 325.73109 * 23 21 20 25 25 C 1.53003 * 117.49434 * 111.39252 * 23 21 20 26 26 C 1.52992 * 117.49734 * 180.02562 * 23 21 20 27 27 C 1.52992 * 138.58647 * 121.62874 * 26 23 21 28 28 C 1.52986 * 138.59240 * 23.40727 * 26 23 21 29 29 C 1.47431 * 108.69699 * 358.58253 * 20 19 18 30 30 H 1.08999 * 109.47296 * 188.99590 * 1 2 3 31 31 H 1.08997 * 109.47574 * 308.99617 * 1 2 3 32 32 H 1.09000 * 109.46814 * 68.99788 * 1 2 3 33 33 H 1.08994 * 109.46996 * 186.04210 * 3 2 1 34 34 H 1.09004 * 109.47086 * 306.04794 * 3 2 1 35 35 H 0.97004 * 119.99896 * 359.97438 * 6 4 3 36 36 H 0.97001 * 120.00111 * 180.02562 * 10 9 7 37 37 H 1.08991 * 109.47259 * 79.76400 * 15 2 1 38 38 H 1.08994 * 109.47160 * 319.75939 * 15 2 1 39 39 H 1.09000 * 110.72194 * 271.95245 * 18 16 15 40 40 H 1.09001 * 110.71921 * 35.22343 * 18 16 15 41 41 H 1.09006 * 109.99635 * 218.66569 * 19 18 16 42 42 H 1.09002 * 109.78046 * 97.49645 * 19 18 16 43 43 H 1.09002 * 117.50161 * 214.97552 * 25 23 21 44 44 H 1.09000 * 117.50117 * 359.97438 * 25 23 21 45 45 H 1.09002 * 117.49716 * 336.58733 * 27 26 23 46 46 H 1.09004 * 117.50385 * 121.61520 * 27 26 23 47 47 H 1.08996 * 117.50387 * 238.38159 * 28 26 23 48 48 H 1.08997 * 117.49827 * 23.38002 * 28 26 23 49 49 H 1.09003 * 110.36498 * 143.19471 * 29 20 19 50 50 H 1.08994 * 110.36697 * 265.40906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0046 1.4455 2.1408 6 7 2.0180 3.3202 1.5233 7 6 1.6923 3.9346 2.7048 8 1 1.1300 3.3988 3.4552 9 6 2.0856 5.2469 2.9368 10 7 1.7730 5.8362 4.0691 11 14 3.0576 6.1741 1.6387 12 1 2.1202 6.8783 0.7274 13 1 3.9447 7.1654 2.2987 14 1 3.8806 5.2157 0.8582 15 6 1.9954 -0.7660 -1.1376 16 6 3.4456 -1.1647 -0.8566 17 1 4.0394 -0.2960 -0.5722 18 6 3.5189 -2.2686 0.2313 19 6 4.8386 -2.9967 -0.1005 20 7 5.1468 -2.7204 -1.5113 21 6 6.2318 -3.1598 -2.1790 22 8 6.3816 -2.8735 -3.3480 23 6 7.2592 -4.0067 -1.4730 24 1 7.4196 -3.7715 -0.4208 25 6 7.3769 -5.4726 -1.8951 26 6 8.4685 -4.4738 -2.2853 27 6 9.9938 -4.3647 -2.2382 28 6 9.2440 -4.0515 -3.5346 29 6 4.0688 -1.8882 -2.0763 30 1 -0.3634 -1.0150 0.1607 31 1 -0.3634 0.6466 0.7986 32 1 -0.3633 0.3683 -0.9594 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9274 -0.8309 35 1 2.5234 3.8014 0.8495 36 1 2.0473 6.7524 4.2309 37 1 1.9551 -0.1532 -2.0381 38 1 1.3933 -1.6631 -1.2814 39 1 3.5592 -1.8269 1.2270 40 1 2.6738 -2.9516 0.1452 41 1 4.7202 -4.0699 0.0497 42 1 5.6389 -2.6175 0.5349 43 1 7.6154 -6.2018 -1.1208 44 1 6.7111 -5.8246 -2.6831 45 1 10.4216 -3.5259 -1.6890 46 1 10.5639 -5.2929 -2.1981 47 1 9.3209 -4.7736 -4.3474 48 1 9.1783 -3.0069 -3.8386 49 1 4.4785 -1.1627 -2.7791 50 1 3.3249 -2.5143 -2.5689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732076224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:06 Heat of formation + Delta-G solvation = -14.814018 kcal Electronic energy + Delta-G solvation = -28641.558508 eV Core-core repulsion = 24670.295485 eV Total energy + Delta-G solvation = -3971.263024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34035 -40.51795 -39.42513 -38.19867 -37.31846 -35.88230 -33.81571 -33.73276 -32.84051 -30.45275 -29.68761 -27.90817 -26.52330 -25.26395 -23.49309 -23.30552 -23.17937 -21.44557 -21.03478 -20.88978 -20.11441 -19.46402 -18.30901 -17.99098 -17.15511 -16.85216 -16.65646 -16.41034 -16.03796 -15.92235 -15.80305 -15.49679 -15.21104 -15.09439 -14.82805 -14.55700 -14.31338 -14.11704 -13.79984 -13.68276 -13.55232 -13.29060 -13.11745 -12.79019 -12.69148 -12.63600 -12.45103 -12.38944 -12.38095 -12.01343 -11.97148 -11.78931 -11.50623 -11.41760 -11.20935 -11.11216 -10.96217 -10.78316 -10.32812 -10.21188 -9.68681 -9.16456 -8.40308 -6.00229 1.29808 1.34464 1.40267 1.43217 1.84893 1.98121 2.22585 2.63574 2.71199 2.79381 3.16103 3.20892 3.30419 3.51268 3.67784 3.77661 3.84182 3.89900 4.07034 4.13085 4.30093 4.31659 4.34426 4.44076 4.46736 4.48595 4.55266 4.57447 4.66149 4.69294 4.73026 4.74600 4.77182 4.79484 4.81161 4.94962 4.97561 4.99989 5.04044 5.19565 5.22856 5.25237 5.32729 5.40321 5.54354 5.91827 6.04190 6.22828 6.46564 6.61388 6.90532 7.09450 7.42104 7.99433 8.77227 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.002220 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.629934 B =12608.866912 C =13709.654220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.533 5.533 3 C 0.052 3.948 4 C 0.454 3.546 5 O -0.601 6.601 6 N -0.595 5.595 7 C -0.323 4.323 8 H 0.057 0.943 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.961 3.039 12 H -0.258 1.258 13 H -0.276 1.276 14 H -0.233 1.233 15 C 0.071 3.929 16 C -0.091 4.091 17 H 0.076 0.924 18 C -0.111 4.111 19 C 0.100 3.900 20 N -0.616 5.616 21 C 0.549 3.451 22 O -0.581 6.581 23 C -0.146 4.146 24 H 0.141 0.859 25 C -0.082 4.082 26 C -0.228 4.228 27 C -0.108 4.108 28 C -0.131 4.131 29 C 0.114 3.886 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.387 0.613 36 H 0.278 0.722 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 -21.975 -16.478 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.257 5.257 3 C -0.079 4.079 4 C 0.241 3.759 5 O -0.485 6.485 6 N -0.237 5.237 7 C -0.452 4.452 8 H 0.076 0.924 9 C -0.214 4.214 10 N -0.576 5.576 11 Si 0.782 3.218 12 H -0.183 1.183 13 H -0.201 1.201 14 H -0.157 1.157 15 C -0.057 4.057 16 C -0.110 4.110 17 H 0.095 0.905 18 C -0.149 4.149 19 C -0.022 4.022 20 N -0.349 5.349 21 C 0.339 3.661 22 O -0.462 6.462 23 C -0.167 4.167 24 H 0.159 0.841 25 C -0.119 4.119 26 C -0.229 4.229 27 C -0.145 4.145 28 C -0.168 4.168 29 C -0.009 4.009 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.153 0.847 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.138 0.862 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.083 0.917 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.468 -22.322 -15.989 30.155 hybrid contribution -0.162 1.740 -0.700 1.883 sum 12.306 -20.581 -16.688 29.215 Atomic orbital electron populations 1.22397 0.86577 1.02919 1.00085 1.61444 1.08677 1.11796 1.43807 1.21867 1.02479 0.90149 0.93435 1.20861 0.82871 0.81660 0.90480 1.90522 1.43935 1.65044 1.48989 1.42082 1.51901 1.12775 1.16984 1.18984 1.34502 0.96878 0.94869 0.92447 1.26067 0.98759 0.97054 0.99535 1.69800 1.47428 1.14289 1.26041 0.85412 0.78948 0.79103 0.78367 1.18280 1.20114 1.15669 1.22071 0.94364 0.98472 0.90785 1.22269 0.95985 0.98183 0.94593 0.90538 1.22535 0.96425 0.96623 0.99279 1.22276 0.98127 1.01512 0.80323 1.48527 1.21608 1.51462 1.13261 1.19867 0.80987 0.79524 0.85732 1.90671 1.77570 1.59761 1.18155 1.21983 0.95985 0.98541 1.00161 0.84123 1.22752 0.97335 0.89304 1.02503 1.21457 0.91479 1.05329 1.04600 1.22853 0.88846 1.03969 0.98821 1.22593 1.01232 1.01574 0.91415 1.22196 0.89051 0.93674 0.95981 0.90296 0.93050 0.94730 0.86971 0.90736 0.77731 0.91239 0.93025 0.88725 0.90428 0.89622 0.89203 0.90660 0.84742 0.88852 0.88097 0.86222 0.87886 0.90224 0.91702 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.15 127.69 1.17 1.95 16 2 N -0.53 -14.52 4.36 -927.06 -4.04 -18.56 16 3 C 0.05 1.55 5.27 85.56 0.45 2.00 16 4 C 0.45 19.97 7.42 87.66 0.65 20.62 16 5 O -0.60 -32.13 13.96 -3.08 -0.04 -32.17 16 6 N -0.60 -27.80 5.09 -306.98 -1.56 -29.36 16 7 C -0.32 -18.75 10.16 84.04 0.85 -17.90 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 9 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 10 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 11 Si 0.96 38.94 27.74 68.60 1.90 40.85 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 15 C 0.07 1.32 4.45 86.30 0.38 1.70 16 16 C -0.09 -1.65 3.09 -9.40 -0.03 -1.68 16 17 H 0.08 1.58 6.71 -2.39 -0.02 1.57 16 18 C -0.11 -1.86 6.35 31.79 0.20 -1.66 16 19 C 0.10 1.44 6.31 86.73 0.55 1.99 16 20 N -0.62 -11.92 3.33 -811.76 -2.70 -14.62 16 21 C 0.55 12.62 7.63 87.66 0.67 13.29 16 22 O -0.58 -17.94 16.50 -3.04 -0.05 -17.99 16 23 C -0.15 -2.42 5.54 -11.54 -0.06 -2.48 16 24 H 0.14 1.78 7.67 -2.39 -0.02 1.77 16 25 C -0.08 -1.05 10.24 30.60 0.31 -0.74 16 26 C -0.23 -3.76 5.05 -52.18 -0.26 -4.03 16 27 C -0.11 -1.34 10.53 30.59 0.32 -1.02 16 28 C -0.13 -2.26 10.16 30.59 0.31 -1.95 16 29 C 0.11 2.12 6.37 86.85 0.55 2.67 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.91 5.79 -2.39 -0.01 1.90 16 32 H 0.03 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.11 2.86 6.59 -2.39 -0.02 2.84 16 34 H 0.07 1.89 8.12 -2.38 -0.02 1.87 16 35 H 0.39 15.13 5.76 -92.71 -0.53 14.60 16 36 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.05 0.86 8.00 -2.39 -0.02 0.84 16 38 H 0.09 1.48 7.79 -2.39 -0.02 1.46 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.30 7.93 -2.39 -0.02 1.28 16 41 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.08 1.01 7.97 -2.39 -0.02 0.99 16 43 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 50 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 Total: -1.00 -80.14 404.42 0.69 -79.45 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.34 Total: 35.96 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.54 Total: 12.38 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -8.00 Total: -118.48 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.09 Total: -50.15 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.85 kcal Total: -80.14 0.69 -79.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732076224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.641 kcal (2) G-P(sol) polarization free energy of solvation -80.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds