Wall clock time and date at job start Tue Mar 31 2020 18:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00013 * 2 1 4 4 C 1.50704 * 109.47035 * 293.95581 * 3 2 1 5 5 O 1.21285 * 120.00355 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99544 * 180.02562 * 4 3 2 7 7 C 1.37104 * 119.99667 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99947 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99856 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00054 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99953 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46920 * 89.99327 * 11 9 7 13 13 H 1.48500 * 109.46908 * 209.99876 * 11 9 7 14 14 H 1.48501 * 109.46851 * 329.99419 * 11 9 7 15 15 C 1.46896 * 111.00229 * 123.95519 * 2 1 3 16 16 C 1.52999 * 109.47275 * 160.29353 * 15 2 1 17 17 H 1.09001 * 110.88786 * 51.97896 * 16 15 2 18 18 C 1.55158 * 111.00478 * 288.05644 * 16 15 2 19 19 C 1.54320 * 102.94338 * 206.42161 * 18 16 15 20 20 N 1.47022 * 107.27183 * 22.19229 * 19 18 16 21 21 C 1.34780 * 125.65129 * 181.08948 * 20 19 18 22 22 O 1.21288 * 119.99979 * 179.97438 * 21 20 19 23 23 C 1.50694 * 119.99910 * 359.96633 * 21 20 19 24 24 H 1.09007 * 115.55028 * 325.66743 * 23 21 20 25 25 C 1.53002 * 117.49973 * 111.37459 * 23 21 20 26 26 C 1.52997 * 117.50175 * 179.97438 * 23 21 20 27 27 C 1.52992 * 138.59189 * 121.61372 * 26 23 21 28 28 C 1.52993 * 138.58622 * 23.39825 * 26 23 21 29 29 C 1.47430 * 108.70235 * 1.06132 * 20 19 18 30 30 H 1.08998 * 109.47168 * 65.62242 * 1 2 3 31 31 H 1.08992 * 109.46996 * 185.62813 * 1 2 3 32 32 H 1.09006 * 109.47146 * 305.62722 * 1 2 3 33 33 H 1.09002 * 109.47182 * 173.95949 * 3 2 1 34 34 H 1.08997 * 109.46890 * 53.95510 * 3 2 1 35 35 H 0.96999 * 120.00602 * 359.97438 * 6 4 3 36 36 H 0.97001 * 120.00313 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47469 * 280.29311 * 15 2 1 38 38 H 1.08998 * 109.47073 * 40.29536 * 15 2 1 39 39 H 1.08995 * 110.72285 * 324.79020 * 18 16 15 40 40 H 1.09004 * 110.71926 * 88.06072 * 18 16 15 41 41 H 1.08999 * 109.88518 * 262.77755 * 19 18 16 42 42 H 1.08999 * 110.01251 * 141.68323 * 19 18 16 43 43 H 1.09001 * 117.49760 * 214.97227 * 25 23 21 44 44 H 1.08991 * 117.50028 * 0.02562 * 25 23 21 45 45 H 1.08998 * 117.49370 * 336.59826 * 27 26 23 46 46 H 1.09000 * 117.49804 * 121.61945 * 27 26 23 47 47 H 1.09000 * 117.50059 * 238.38712 * 28 26 23 48 48 H 1.09006 * 117.49780 * 23.40462 * 28 26 23 49 49 H 1.08996 * 110.36552 * 217.02810 * 29 20 19 50 50 H 1.08998 * 110.37032 * 94.70993 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0054 1.4454 -2.1411 6 7 2.0189 3.3199 -1.5237 7 6 1.6922 3.9349 -2.7047 8 1 1.1292 3.3992 -3.4547 9 6 2.0865 5.2468 -2.9372 10 7 2.7720 5.8983 -2.0248 11 14 1.6420 6.0844 -4.5466 12 1 0.3303 6.7658 -4.4042 13 1 2.6850 7.0847 -4.8885 14 1 1.5576 5.0685 -5.6265 15 6 1.9955 -0.7660 1.1375 16 6 3.4460 -1.1635 0.8571 17 1 4.0389 -0.2946 0.5714 18 6 3.5196 -2.2694 -0.2288 19 6 4.8427 -2.9915 0.1023 20 7 5.1484 -2.7169 1.5140 21 6 6.2347 -3.1534 2.1818 22 8 6.3852 -2.8640 3.3500 23 6 7.2621 -4.0011 1.4770 24 1 6.8710 -4.6834 0.7222 25 6 8.6372 -3.3798 1.2237 26 6 8.4729 -4.4647 2.2893 27 6 9.1424 -5.7764 2.7040 28 6 8.8501 -4.7016 3.7529 29 6 4.0701 -1.8845 2.0779 30 1 -0.3633 0.4242 -0.9360 31 1 -0.3633 -1.0226 0.1008 32 1 -0.3634 0.5987 0.8354 33 1 3.0797 1.3444 0.1081 34 1 1.5611 1.9273 0.8309 35 1 2.5242 3.8011 -0.8499 36 1 3.0469 6.8144 -2.1869 37 1 1.9543 -0.1535 2.0382 38 1 1.3939 -1.6636 1.2807 39 1 2.6750 -2.9526 -0.1413 40 1 3.5594 -1.8293 -1.2253 41 1 5.6426 -2.6087 -0.5314 42 1 4.7302 -4.0648 -0.0507 43 1 9.1510 -3.6533 0.3022 44 1 8.7988 -2.3581 1.5672 45 1 8.5245 -6.6743 2.7178 46 1 10.1819 -5.9252 2.4119 47 1 9.6974 -4.1433 4.1510 48 1 8.0401 -4.8924 4.4569 49 1 4.4796 -1.1575 2.7793 50 1 3.3258 -2.5102 2.5703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732076226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:13 Heat of formation + Delta-G solvation = 1.293198 kcal Electronic energy + Delta-G solvation = -28578.229726 eV Core-core repulsion = 24607.665163 eV Total energy + Delta-G solvation = -3970.564562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46334 -38.98331 -38.28030 -37.21619 -36.05029 -33.87142 -33.06122 -31.93620 -31.24142 -29.60946 -28.03416 -26.90183 -24.84697 -24.25206 -22.73364 -22.69260 -22.05301 -20.37734 -20.14446 -19.13199 -18.68741 -17.83520 -17.38789 -16.70804 -15.92743 -15.69845 -15.30445 -15.24792 -15.14435 -14.91508 -14.44674 -14.28429 -13.84509 -13.68141 -13.65550 -13.44299 -13.31562 -12.71844 -12.60435 -12.49666 -12.10726 -11.99015 -11.79431 -11.77027 -11.51764 -11.46322 -11.28703 -11.09122 -10.99297 -10.88586 -10.54844 -10.52367 -10.42973 -10.39135 -10.30939 -10.21952 -9.90206 -9.48048 -8.81199 -8.44941 -7.98096 -7.84228 -6.41690 -3.82518 2.27906 2.65704 3.17280 3.26011 3.31667 3.39655 3.46320 3.89913 3.93262 3.95396 4.19903 4.31091 4.45986 4.49431 4.63257 4.68344 4.83148 5.04325 5.08571 5.11203 5.17974 5.22155 5.24562 5.30125 5.33005 5.35225 5.37900 5.42137 5.55644 5.57088 5.61834 5.63280 5.66920 5.74385 5.77748 5.83610 5.86739 5.91987 6.01372 6.05674 6.16066 6.24604 6.29939 6.55637 7.25335 7.33157 7.38681 7.55068 8.00305 8.06505 8.62027 9.18276 9.54842 10.06710 10.76049 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.002063 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.375993 B =13567.407551 C =14524.100857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.516 5.516 3 C 0.044 3.956 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.065 3.935 16 C -0.096 4.096 17 H 0.088 0.912 18 C -0.114 4.114 19 C 0.097 3.903 20 N -0.615 5.615 21 C 0.556 3.444 22 O -0.537 6.537 23 C -0.138 4.138 24 H 0.123 0.877 25 C -0.098 4.098 26 C -0.203 4.203 27 C -0.130 4.130 28 C -0.113 4.113 29 C 0.111 3.889 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 -20.145 9.226 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.239 5.239 3 C -0.088 4.088 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.202 5.202 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.064 4.064 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.151 4.151 19 C -0.026 4.026 20 N -0.349 5.349 21 C 0.345 3.655 22 O -0.414 6.414 23 C -0.158 4.158 24 H 0.141 0.859 25 C -0.136 4.136 26 C -0.204 4.204 27 C -0.166 4.166 28 C -0.150 4.150 29 C -0.011 4.011 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.096 0.904 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.789 -20.457 8.881 23.972 hybrid contribution -0.227 1.250 0.277 1.300 sum 8.562 -19.208 9.159 22.937 Atomic orbital electron populations 1.22539 0.86501 1.00611 1.02718 1.61532 1.08546 1.12773 1.41094 1.21947 1.00721 0.88979 0.97127 1.19732 0.85404 0.82913 0.88931 1.90473 1.43935 1.64645 1.47130 1.41880 1.49440 1.10824 1.18056 1.19687 1.32855 0.95460 0.94767 0.87923 1.25262 0.96840 0.96690 0.99220 1.69610 1.38014 1.12234 1.34473 0.85866 0.78004 0.78913 0.81556 1.20457 1.20949 1.19415 1.22041 0.94186 0.98107 0.92047 1.22366 0.96517 0.98371 0.94262 0.89343 1.22572 0.95332 0.96731 1.00508 1.22180 0.98640 1.00125 0.81605 1.48424 1.21901 1.52180 1.12404 1.19335 0.80495 0.79607 0.86091 1.90698 1.76416 1.58055 1.16233 1.21927 0.89211 1.02387 1.02324 0.85912 1.22662 0.94950 0.97354 0.98599 1.21169 1.00391 1.00679 0.98132 1.22765 1.00569 0.91299 1.01993 1.22598 1.02418 1.00296 0.89702 1.22236 0.88861 0.93705 0.96330 0.88494 0.92408 0.96664 0.89508 0.93500 0.77533 0.91891 0.94511 0.90611 0.90556 0.88905 0.91146 0.91541 0.87444 0.87988 0.88565 0.88281 0.88489 0.88238 0.90423 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.19 60.06 0.55 0.92 16 2 N -0.52 -7.98 4.36 -244.38 -1.07 -9.05 16 3 C 0.04 0.75 5.28 -4.97 -0.03 0.73 16 4 C 0.44 10.22 7.54 -10.98 -0.08 10.14 16 5 O -0.58 -15.07 13.88 5.55 0.08 -14.99 16 6 N -0.57 -14.13 5.29 -10.96 -0.06 -14.19 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 11 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.07 0.76 4.45 -3.83 -0.02 0.74 16 16 C -0.10 -1.05 3.09 -88.47 -0.27 -1.32 16 17 H 0.09 1.09 6.70 -51.93 -0.35 0.75 16 18 C -0.11 -1.14 6.36 -24.90 -0.16 -1.30 16 19 C 0.10 0.87 6.28 -3.07 -0.02 0.85 16 20 N -0.62 -6.81 3.33 -170.52 -0.57 -7.38 16 21 C 0.56 6.92 7.63 -10.99 -0.08 6.84 16 22 O -0.54 -8.50 16.50 5.55 0.09 -8.41 16 23 C -0.14 -1.31 5.54 -91.78 -0.51 -1.82 16 24 H 0.12 0.94 7.73 -51.93 -0.40 0.54 16 25 C -0.10 -0.83 10.23 -26.75 -0.27 -1.11 16 26 C -0.20 -1.90 5.05 -154.54 -0.78 -2.68 16 27 C -0.13 -0.93 10.53 -26.74 -0.28 -1.21 16 28 C -0.11 -1.02 10.16 -26.73 -0.27 -1.29 16 29 C 0.11 1.21 6.38 -2.53 -0.02 1.20 16 30 H 0.10 1.84 6.00 -51.93 -0.31 1.53 16 31 H 0.06 0.74 7.84 -51.93 -0.41 0.34 16 32 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 33 H 0.09 1.37 6.59 -51.93 -0.34 1.03 16 34 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.04 0.41 8.00 -51.93 -0.42 0.00 16 38 H 0.08 0.79 7.59 -51.93 -0.39 0.39 16 39 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 50 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -32.68 407.31 -10.50 -43.18 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.34 Total: 9.71 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.48 Total: 2.81 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.97 Total: -54.33 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.68 -10.50 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732076226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.472 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds