Wall clock time and date at job start Tue Mar 31 2020 18:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00013 * 2 1 4 4 C 1.50704 * 109.47035 * 293.95581 * 3 2 1 5 5 O 1.21285 * 120.00355 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99544 * 180.02562 * 4 3 2 7 7 C 1.37104 * 119.99667 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99947 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99856 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00054 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99953 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46920 * 89.99327 * 11 9 7 13 13 H 1.48500 * 109.46908 * 209.99876 * 11 9 7 14 14 H 1.48501 * 109.46851 * 329.99419 * 11 9 7 15 15 C 1.46896 * 111.00229 * 123.95519 * 2 1 3 16 16 C 1.52999 * 109.47275 * 160.29353 * 15 2 1 17 17 H 1.09001 * 110.88786 * 51.97896 * 16 15 2 18 18 C 1.55158 * 111.00478 * 288.05644 * 16 15 2 19 19 C 1.54320 * 102.94338 * 206.42161 * 18 16 15 20 20 N 1.47022 * 107.27183 * 22.19229 * 19 18 16 21 21 C 1.34780 * 125.65129 * 181.08948 * 20 19 18 22 22 O 1.21288 * 119.99979 * 179.97438 * 21 20 19 23 23 C 1.50694 * 119.99910 * 359.96633 * 21 20 19 24 24 H 1.09007 * 115.55028 * 325.66743 * 23 21 20 25 25 C 1.53002 * 117.49973 * 111.37459 * 23 21 20 26 26 C 1.52997 * 117.50175 * 179.97438 * 23 21 20 27 27 C 1.52992 * 138.59189 * 121.61372 * 26 23 21 28 28 C 1.52993 * 138.58622 * 23.39825 * 26 23 21 29 29 C 1.47430 * 108.70235 * 1.06132 * 20 19 18 30 30 H 1.08998 * 109.47168 * 65.62242 * 1 2 3 31 31 H 1.08992 * 109.46996 * 185.62813 * 1 2 3 32 32 H 1.09006 * 109.47146 * 305.62722 * 1 2 3 33 33 H 1.09002 * 109.47182 * 173.95949 * 3 2 1 34 34 H 1.08997 * 109.46890 * 53.95510 * 3 2 1 35 35 H 0.96999 * 120.00602 * 359.97438 * 6 4 3 36 36 H 0.97001 * 120.00313 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47469 * 280.29311 * 15 2 1 38 38 H 1.08998 * 109.47073 * 40.29536 * 15 2 1 39 39 H 1.08995 * 110.72285 * 324.79020 * 18 16 15 40 40 H 1.09004 * 110.71926 * 88.06072 * 18 16 15 41 41 H 1.08999 * 109.88518 * 262.77755 * 19 18 16 42 42 H 1.08999 * 110.01251 * 141.68323 * 19 18 16 43 43 H 1.09001 * 117.49760 * 214.97227 * 25 23 21 44 44 H 1.08991 * 117.50028 * 0.02562 * 25 23 21 45 45 H 1.08998 * 117.49370 * 336.59826 * 27 26 23 46 46 H 1.09000 * 117.49804 * 121.61945 * 27 26 23 47 47 H 1.09000 * 117.50059 * 238.38712 * 28 26 23 48 48 H 1.09006 * 117.49780 * 23.40462 * 28 26 23 49 49 H 1.08996 * 110.36552 * 217.02810 * 29 20 19 50 50 H 1.08998 * 110.37032 * 94.70993 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0054 1.4454 -2.1411 6 7 2.0189 3.3199 -1.5237 7 6 1.6922 3.9349 -2.7047 8 1 1.1292 3.3992 -3.4547 9 6 2.0865 5.2468 -2.9372 10 7 2.7720 5.8983 -2.0248 11 14 1.6420 6.0844 -4.5466 12 1 0.3303 6.7658 -4.4042 13 1 2.6850 7.0847 -4.8885 14 1 1.5576 5.0685 -5.6265 15 6 1.9955 -0.7660 1.1375 16 6 3.4460 -1.1635 0.8571 17 1 4.0389 -0.2946 0.5714 18 6 3.5196 -2.2694 -0.2288 19 6 4.8427 -2.9915 0.1023 20 7 5.1484 -2.7169 1.5140 21 6 6.2347 -3.1534 2.1818 22 8 6.3852 -2.8640 3.3500 23 6 7.2621 -4.0011 1.4770 24 1 6.8710 -4.6834 0.7222 25 6 8.6372 -3.3798 1.2237 26 6 8.4729 -4.4647 2.2893 27 6 9.1424 -5.7764 2.7040 28 6 8.8501 -4.7016 3.7529 29 6 4.0701 -1.8845 2.0779 30 1 -0.3633 0.4242 -0.9360 31 1 -0.3633 -1.0226 0.1008 32 1 -0.3634 0.5987 0.8354 33 1 3.0797 1.3444 0.1081 34 1 1.5611 1.9273 0.8309 35 1 2.5242 3.8011 -0.8499 36 1 3.0469 6.8144 -2.1869 37 1 1.9543 -0.1535 2.0382 38 1 1.3939 -1.6636 1.2807 39 1 2.6750 -2.9526 -0.1413 40 1 3.5594 -1.8293 -1.2253 41 1 5.6426 -2.6087 -0.5314 42 1 4.7302 -4.0648 -0.0507 43 1 9.1510 -3.6533 0.3022 44 1 8.7988 -2.3581 1.5672 45 1 8.5245 -6.6743 2.7178 46 1 10.1819 -5.9252 2.4119 47 1 9.6974 -4.1433 4.1510 48 1 8.0401 -4.8924 4.4569 49 1 4.4796 -1.1575 2.7793 50 1 3.3258 -2.5102 2.5703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732076226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:12 Heat of formation + Delta-G solvation = -19.771318 kcal Electronic energy + Delta-G solvation = -28579.143152 eV Core-core repulsion = 24607.665163 eV Total energy + Delta-G solvation = -3971.477988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34144 -40.39341 -39.40225 -38.18926 -37.29745 -35.83277 -33.81352 -33.25664 -32.83889 -30.44934 -29.54663 -27.90709 -26.62604 -25.28549 -23.50162 -23.30132 -23.23606 -21.46517 -20.88577 -20.74381 -19.83117 -19.47124 -18.24517 -18.01604 -17.17854 -16.65919 -16.64272 -16.46730 -16.08603 -15.91185 -15.82224 -15.47658 -15.28328 -15.09500 -14.84987 -14.56489 -14.21672 -13.81017 -13.69677 -13.56456 -13.42173 -13.31314 -13.04033 -12.73786 -12.68180 -12.64217 -12.45481 -12.37996 -12.37318 -12.11614 -11.99725 -11.80103 -11.50574 -11.40885 -11.21359 -11.11253 -10.96294 -10.78493 -10.24098 -9.98310 -9.68925 -9.15759 -8.44839 -5.93226 1.38565 1.39965 1.42104 1.54836 1.83748 2.08158 2.29367 2.71287 2.77599 2.79636 3.22072 3.30550 3.37925 3.52193 3.68128 3.79438 3.81110 3.89888 4.06521 4.22142 4.30524 4.36031 4.38528 4.45033 4.47013 4.53165 4.55490 4.57784 4.64122 4.71035 4.73054 4.74573 4.77172 4.78365 4.79827 4.94128 4.96989 5.00432 5.02529 5.19687 5.24794 5.25878 5.32213 5.40149 5.42871 5.90164 6.09596 6.24911 6.46606 6.62796 7.09007 7.15251 7.59222 8.14999 8.72629 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.002063 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.375993 B =13567.407551 C =14524.100857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.529 5.529 3 C 0.056 3.944 4 C 0.444 3.556 5 O -0.611 6.611 6 N -0.578 5.578 7 C -0.329 4.329 8 H 0.080 0.920 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.069 3.931 16 C -0.091 4.091 17 H 0.072 0.928 18 C -0.109 4.109 19 C 0.099 3.901 20 N -0.616 5.616 21 C 0.548 3.452 22 O -0.582 6.582 23 C -0.142 4.142 24 H 0.146 0.854 25 C -0.090 4.090 26 C -0.227 4.227 27 C -0.104 4.104 28 C -0.133 4.133 29 C 0.114 3.886 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.276 0.724 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.134 0.866 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -21.657 8.913 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.075 4.075 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.215 5.215 7 C -0.459 4.459 8 H 0.098 0.902 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.197 1.197 14 H -0.196 1.196 15 C -0.058 4.058 16 C -0.110 4.110 17 H 0.091 0.909 18 C -0.147 4.147 19 C -0.022 4.022 20 N -0.349 5.349 21 C 0.338 3.662 22 O -0.462 6.462 23 C -0.163 4.163 24 H 0.164 0.836 25 C -0.127 4.127 26 C -0.227 4.227 27 C -0.140 4.140 28 C -0.170 4.170 29 C -0.009 4.009 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.152 0.848 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.136 0.864 47 H 0.118 0.882 48 H 0.101 0.899 49 H 0.081 0.919 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.337 -21.979 8.567 25.370 hybrid contribution -0.433 1.673 0.423 1.779 sum 8.905 -20.306 8.990 23.926 Atomic orbital electron populations 1.22432 0.86529 1.02194 1.00828 1.61468 1.08680 1.11694 1.43446 1.21794 1.01862 0.89940 0.93906 1.20742 0.83616 0.82141 0.90374 1.90455 1.44974 1.65259 1.48934 1.41966 1.50184 1.11717 1.17647 1.19653 1.34155 0.96358 0.95688 0.90169 1.26040 0.96376 0.96738 1.02368 1.69677 1.38264 1.12625 1.35823 0.84936 0.78148 0.77808 0.77509 1.19730 1.19723 1.19644 1.22094 0.94514 0.98406 0.90832 1.22254 0.95903 0.98147 0.94714 0.90934 1.22527 0.96428 0.96537 0.99226 1.22279 0.98181 1.01482 0.80298 1.48533 1.21544 1.51552 1.13239 1.19907 0.81006 0.79515 0.85774 1.90672 1.77432 1.59889 1.18198 1.21984 0.88793 1.02651 1.02823 0.83600 1.22728 0.94203 0.96476 0.99339 1.21439 1.00590 1.02423 0.98287 1.22863 1.01514 0.90468 0.99171 1.22609 1.02272 1.02249 0.89823 1.22185 0.89073 0.93654 0.95982 0.92568 0.89614 0.95773 0.87877 0.91934 0.77228 0.91426 0.93590 0.88489 0.89453 0.90378 0.90509 0.89166 0.84827 0.89464 0.87597 0.86354 0.88199 0.89937 0.91912 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.19 127.69 1.17 2.00 16 2 N -0.53 -15.63 4.36 -927.07 -4.04 -19.68 16 3 C 0.06 1.90 5.28 85.56 0.45 2.35 16 4 C 0.44 20.72 7.54 87.66 0.66 21.38 16 5 O -0.61 -32.67 13.88 -3.04 -0.04 -32.72 16 6 N -0.58 -29.50 5.29 -306.98 -1.62 -31.12 16 7 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 10 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 11 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 C 0.07 1.46 4.45 86.30 0.38 1.84 16 16 C -0.09 -1.85 3.09 -9.40 -0.03 -1.88 16 17 H 0.07 1.73 6.70 -2.39 -0.02 1.72 16 18 C -0.11 -1.98 6.36 31.78 0.20 -1.77 16 19 C 0.10 1.55 6.28 86.73 0.55 2.09 16 20 N -0.62 -12.83 3.33 -811.80 -2.70 -15.53 16 21 C 0.55 13.32 7.63 87.65 0.67 13.99 16 22 O -0.58 -18.78 16.50 -3.05 -0.05 -18.83 16 23 C -0.14 -2.48 5.54 -11.54 -0.06 -2.55 16 24 H 0.15 1.80 7.73 -2.38 -0.02 1.78 16 25 C -0.09 -1.39 10.23 30.58 0.31 -1.08 16 26 C -0.23 -3.94 5.05 -52.20 -0.26 -4.20 16 27 C -0.10 -1.26 10.53 30.59 0.32 -0.94 16 28 C -0.13 -2.35 10.16 30.59 0.31 -2.04 16 29 C 0.11 2.35 6.38 86.85 0.55 2.90 16 30 H 0.06 2.15 6.00 -2.39 -0.01 2.13 16 31 H 0.09 2.01 7.84 -2.39 -0.02 1.99 16 32 H 0.02 0.66 8.07 -2.38 -0.02 0.64 16 33 H 0.10 3.17 6.59 -2.39 -0.02 3.15 16 34 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 35 H 0.39 19.32 7.90 -92.71 -0.73 18.59 16 36 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.05 0.92 8.00 -2.39 -0.02 0.90 16 38 H 0.10 1.68 7.59 -2.39 -0.02 1.66 16 39 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16 40 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 43 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 50 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 Total: -1.00 -72.69 407.31 0.57 -72.13 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.21 Total: 36.60 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 6.51 Total: 13.98 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -8.09 Total: -116.07 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.09 Total: -51.55 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.69 0.57 -72.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732076226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.355 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds