Wall clock time and date at job start Tue Mar 31 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00305 * 2 1 4 4 C 1.39682 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.38915 * 120.07270 * 0.02562 * 4 2 1 6 6 C 1.38102 * 119.92178 * 180.02562 * 5 4 2 7 7 C 1.38279 * 120.07832 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.92601 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47078 * 90.00027 * 8 7 6 10 10 C 1.50702 * 109.46902 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00432 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99975 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00080 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47007 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47261 * 60.00083 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99994 * 14 13 12 17 17 C 1.53002 * 109.47143 * 179.97438 * 14 13 12 18 18 N 1.46503 * 109.47189 * 184.99897 * 17 14 13 19 19 C 1.36938 * 119.99947 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99578 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99714 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99778 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00355 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46923 * 89.99898 * 23 21 19 25 25 H 1.48498 * 109.47276 * 209.99615 * 23 21 19 26 26 H 1.48497 * 109.47017 * 329.99943 * 23 21 19 27 27 C 1.38294 * 120.14899 * 0.27431 * 7 6 5 28 28 C 1.38109 * 120.06911 * 359.45185 * 27 7 6 29 29 H 1.08997 * 109.47463 * 240.00630 * 1 2 3 30 30 H 1.09002 * 109.46855 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.47326 * 120.00030 * 1 2 3 32 32 H 1.09001 * 109.46771 * 269.99290 * 3 2 1 33 33 H 1.08995 * 109.47519 * 29.99869 * 3 2 1 34 34 H 1.09005 * 109.47105 * 149.99735 * 3 2 1 35 35 H 1.07999 * 120.03450 * 0.03998 * 5 4 2 36 36 H 1.08004 * 119.95663 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47358 * 329.99444 * 8 7 6 38 38 H 1.09002 * 109.46959 * 209.99939 * 8 7 6 39 39 H 1.09004 * 109.47261 * 59.99965 * 9 8 7 40 40 H 1.09002 * 109.47153 * 299.99793 * 9 8 7 41 41 H 0.96998 * 119.99822 * 0.02562 * 12 10 9 42 42 H 1.08992 * 109.46764 * 60.00591 * 13 12 10 43 43 H 1.09002 * 109.47092 * 300.00472 * 13 12 10 44 44 H 0.96702 * 113.99404 * 300.00214 * 16 14 13 45 45 H 1.08997 * 109.47011 * 304.99871 * 17 14 13 46 46 H 1.09005 * 109.46847 * 64.99998 * 17 14 13 47 47 H 0.96993 * 119.99759 * 359.97438 * 18 17 14 48 48 H 0.96999 * 120.00259 * 180.02562 * 22 21 19 49 49 H 1.07997 * 119.96230 * 179.70634 * 27 7 6 50 50 H 1.07994 * 120.03099 * 180.27769 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2097 0.0005 5 6 1.4702 -2.4136 0.0005 6 6 2.1639 -3.6078 0.0016 7 6 3.5466 -3.6061 0.0021 8 6 4.3001 -4.9112 0.0027 9 6 4.5556 -5.3532 -1.4395 10 6 5.3096 -6.6581 -1.4389 11 8 5.6123 -7.1831 -0.3884 12 7 5.6466 -7.2422 -2.6059 13 6 6.3791 -8.5109 -2.6053 14 6 6.6347 -8.9529 -4.0476 15 1 7.2241 -8.1933 -4.5613 16 8 5.3864 -9.1239 -4.7218 17 6 7.4002 -10.2776 -4.0470 18 7 7.7492 -10.6406 -5.4228 19 6 8.4414 -11.7957 -5.6716 20 1 8.7303 -12.4389 -4.8535 21 6 8.7715 -12.1398 -6.9751 22 7 9.4372 -13.2498 -7.2142 23 14 8.2712 -11.0276 -8.3901 24 1 9.3462 -10.0349 -8.6434 25 1 8.0555 -11.8458 -9.6104 26 1 7.0142 -10.3180 -8.0413 27 6 4.2398 -2.4094 0.0073 28 6 3.5523 -1.2116 0.0006 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8899 32 1 2.3793 1.5832 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1383 0.5139 35 1 0.3902 -2.4156 -0.0005 36 1 1.6256 -4.5441 0.0020 37 1 3.7108 -5.6707 0.5166 38 1 5.2523 -4.7808 0.5169 39 1 5.1449 -4.5937 -1.9534 40 1 3.6034 -5.4836 -1.9537 41 1 5.4042 -6.8225 -3.4461 42 1 5.7899 -9.2703 -2.0913 43 1 7.3314 -8.3804 -2.0914 44 1 4.8090 -9.7865 -4.3183 45 1 8.3107 -10.1708 -3.4573 46 1 6.7754 -11.0581 -3.6127 47 1 7.4894 -10.0631 -6.1574 48 1 9.6683 -13.4901 -8.1251 49 1 5.3197 -2.4116 0.0125 50 1 4.0942 -0.2774 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732648067.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:53 Heat of formation + Delta-G solvation = -48.265182 kcal Electronic energy + Delta-G solvation = -27195.567432 eV Core-core repulsion = 23222.853857 eV Total energy + Delta-G solvation = -3972.713575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18856 -39.68550 -37.82155 -36.97099 -34.49046 -34.10758 -33.54175 -31.50090 -31.45918 -30.09201 -29.04022 -28.61717 -26.30601 -25.09261 -23.27781 -22.66951 -22.09462 -21.51430 -20.64960 -20.18226 -17.82164 -17.72069 -17.32051 -16.43435 -16.42658 -16.07624 -15.53819 -15.41703 -15.31748 -15.13698 -14.56577 -14.39969 -14.27704 -13.85006 -13.78831 -13.60101 -13.34270 -13.23920 -13.16150 -13.04295 -12.62273 -12.52448 -12.43790 -12.38260 -12.13322 -11.97118 -11.48901 -11.41295 -11.30874 -10.95895 -10.87293 -10.80662 -10.18560 -10.13573 -9.97520 -9.69701 -9.54242 -9.19650 -9.13037 -8.93024 -7.60421 -7.26276 -5.77974 -3.14287 1.16793 1.27290 2.58749 2.69034 3.09212 3.39153 3.44922 3.46570 3.58467 4.44934 4.47803 4.49136 4.57803 4.60013 4.68644 4.72000 4.72396 4.82050 4.85046 4.91618 5.03588 5.09615 5.14019 5.16401 5.18948 5.21556 5.28396 5.35590 5.46799 5.48746 5.51307 5.65019 5.72762 5.76188 5.78214 5.87551 5.95584 5.98744 6.14400 6.35350 6.42283 6.49707 6.54989 6.56245 6.82252 7.10281 7.43713 7.77185 7.97773 8.16813 8.40467 9.19877 9.91856 10.11454 11.40069 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.001505 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.229726 B =18600.982091 C =19139.791352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.641 5.641 3 C 0.093 3.907 4 C 0.207 3.793 5 C -0.193 4.193 6 C -0.067 4.067 7 C -0.138 4.138 8 C -0.056 4.056 9 C -0.134 4.134 10 C 0.509 3.491 11 O -0.545 6.545 12 N -0.724 5.724 13 C 0.089 3.911 14 C 0.085 3.915 15 H 0.104 0.896 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.750 5.750 19 C -0.249 4.249 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.273 1.273 27 C -0.067 4.067 28 C -0.195 4.195 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.405 0.595 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.376 0.624 45 H 0.038 0.962 46 H 0.032 0.968 47 H 0.365 0.635 48 H 0.260 0.740 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 30.610 16.461 39.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.354 5.354 3 C -0.050 4.050 4 C 0.107 3.893 5 C -0.215 4.215 6 C -0.086 4.086 7 C -0.140 4.140 8 C -0.094 4.094 9 C -0.174 4.174 10 C 0.296 3.704 11 O -0.422 6.422 12 N -0.376 5.376 13 C -0.035 4.035 14 C 0.025 3.975 15 H 0.122 0.878 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.199 1.199 27 C -0.086 4.086 28 C -0.217 4.217 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.239 0.761 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.223 0.777 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.199 0.801 48 H 0.070 0.930 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.385 30.637 16.865 39.511 hybrid contribution -0.604 0.489 -1.189 1.421 sum -18.989 31.127 15.676 39.689 Atomic orbital electron populations 1.21580 0.79543 1.02317 1.01205 1.46313 1.04946 1.03211 1.80935 1.21653 0.97333 0.84861 1.01134 1.17826 0.91230 0.85594 0.94691 1.20619 0.99470 0.91070 1.10352 1.20817 0.93529 0.97293 0.96958 1.19660 0.93612 0.94752 1.06010 1.20198 1.00645 0.93677 0.94890 1.21679 1.01352 0.94755 0.99631 1.20774 0.79409 0.86664 0.83583 1.90708 1.54837 1.65376 1.31309 1.45970 1.58405 1.24328 1.08921 1.22050 0.97567 0.85737 0.98155 1.22455 0.85830 0.98839 0.90380 0.87812 1.86548 1.28915 1.63460 1.57288 1.21183 0.97039 0.92673 0.88835 1.42574 1.68553 1.26616 1.01827 1.19049 1.27132 0.97619 0.94029 0.89250 1.24665 1.00122 0.97197 0.96980 1.69706 1.44238 1.24269 1.19862 0.86540 0.78616 0.80478 0.82967 1.21112 1.21723 1.19867 1.20821 0.99469 0.91342 0.96973 1.20661 0.92038 0.98572 1.10467 0.92863 0.90994 0.92799 0.93453 0.91650 0.91308 0.86302 0.86106 0.90537 0.90534 0.88896 0.88847 0.76055 0.90979 0.90350 0.77689 0.94438 0.95056 0.80125 0.93018 0.86102 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 9.40 59.84 0.56 0.99 16 2 N -0.64 -4.18 3.41 -187.56 -0.64 -4.82 16 3 C 0.09 0.41 10.16 59.85 0.61 1.02 16 4 C 0.21 1.70 6.55 -83.79 -0.55 1.15 16 5 C -0.19 -1.55 9.31 -39.38 -0.37 -1.92 16 6 C -0.07 -0.55 9.69 -39.62 -0.38 -0.94 16 7 C -0.14 -1.18 5.14 -104.59 -0.54 -1.72 16 8 C -0.06 -0.50 4.63 -27.88 -0.13 -0.63 16 9 C -0.13 -1.11 5.68 -27.88 -0.16 -1.27 16 10 C 0.51 5.90 7.83 -10.98 -0.09 5.81 16 11 O -0.54 -8.43 15.98 5.56 0.09 -8.34 16 12 N -0.72 -7.79 5.45 -60.30 -0.33 -8.12 16 13 C 0.09 1.10 5.34 -4.04 -0.02 1.08 16 14 C 0.08 1.20 3.08 -26.73 -0.08 1.11 16 15 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 16 O -0.56 -7.96 13.03 -35.23 -0.46 -8.42 16 17 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 18 N -0.75 -17.75 5.35 -59.91 -0.32 -18.07 16 19 C -0.25 -7.08 10.47 -15.06 -0.16 -7.24 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 23 Si 0.88 22.31 27.73 -169.99 -4.71 17.60 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.27 -6.58 6.52 56.52 0.37 -6.21 16 27 C -0.07 -0.55 9.69 -39.61 -0.38 -0.93 16 28 C -0.20 -1.56 9.21 -39.38 -0.36 -1.92 16 29 H 0.05 0.23 7.95 -51.93 -0.41 -0.19 16 30 H 0.07 0.19 7.79 -51.93 -0.40 -0.21 16 31 H 0.05 0.23 7.95 -51.93 -0.41 -0.18 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.19 7.92 -51.93 -0.41 -0.22 16 34 H 0.07 0.29 6.20 -51.93 -0.32 -0.04 16 35 H 0.12 0.79 6.73 -52.49 -0.35 0.43 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 38 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 3.69 8.35 -40.82 -0.34 3.34 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.38 4.41 9.05 45.56 0.41 4.82 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.37 8.60 5.53 -40.82 -0.23 8.38 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 0.77 6.14 -52.49 -0.32 0.45 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -35.92 410.55 -9.03 -44.94 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.45 Total: 10.67 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.17 Total: -2.93 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.51 Total: -59.71 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.37 Total: -16.76 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.92 -9.03 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732648067.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.323 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds