Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00305 * 2 1 4 4 C 1.39682 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.38915 * 120.07270 * 0.02562 * 4 2 1 6 6 C 1.38102 * 119.92178 * 180.02562 * 5 4 2 7 7 C 1.38279 * 120.07832 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.92601 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47078 * 90.00027 * 8 7 6 10 10 C 1.50702 * 109.46902 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00432 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99975 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00080 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47007 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47261 * 60.00083 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99994 * 14 13 12 17 17 C 1.53002 * 109.47143 * 179.97438 * 14 13 12 18 18 N 1.46503 * 109.47189 * 184.99897 * 17 14 13 19 19 C 1.36938 * 119.99947 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99578 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99714 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99778 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00355 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46923 * 89.99898 * 23 21 19 25 25 H 1.48498 * 109.47276 * 209.99615 * 23 21 19 26 26 H 1.48497 * 109.47017 * 329.99943 * 23 21 19 27 27 C 1.38294 * 120.14899 * 0.27431 * 7 6 5 28 28 C 1.38109 * 120.06911 * 359.45185 * 27 7 6 29 29 H 1.08997 * 109.47463 * 240.00630 * 1 2 3 30 30 H 1.09002 * 109.46855 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.47326 * 120.00030 * 1 2 3 32 32 H 1.09001 * 109.46771 * 269.99290 * 3 2 1 33 33 H 1.08995 * 109.47519 * 29.99869 * 3 2 1 34 34 H 1.09005 * 109.47105 * 149.99735 * 3 2 1 35 35 H 1.07999 * 120.03450 * 0.03998 * 5 4 2 36 36 H 1.08004 * 119.95663 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47358 * 329.99444 * 8 7 6 38 38 H 1.09002 * 109.46959 * 209.99939 * 8 7 6 39 39 H 1.09004 * 109.47261 * 59.99965 * 9 8 7 40 40 H 1.09002 * 109.47153 * 299.99793 * 9 8 7 41 41 H 0.96998 * 119.99822 * 0.02562 * 12 10 9 42 42 H 1.08992 * 109.46764 * 60.00591 * 13 12 10 43 43 H 1.09002 * 109.47092 * 300.00472 * 13 12 10 44 44 H 0.96702 * 113.99404 * 300.00214 * 16 14 13 45 45 H 1.08997 * 109.47011 * 304.99871 * 17 14 13 46 46 H 1.09005 * 109.46847 * 64.99998 * 17 14 13 47 47 H 0.96993 * 119.99759 * 359.97438 * 18 17 14 48 48 H 0.96999 * 120.00259 * 180.02562 * 22 21 19 49 49 H 1.07997 * 119.96230 * 179.70634 * 27 7 6 50 50 H 1.07994 * 120.03099 * 180.27769 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2097 0.0005 5 6 1.4702 -2.4136 0.0005 6 6 2.1639 -3.6078 0.0016 7 6 3.5466 -3.6061 0.0021 8 6 4.3001 -4.9112 0.0027 9 6 4.5556 -5.3532 -1.4395 10 6 5.3096 -6.6581 -1.4389 11 8 5.6123 -7.1831 -0.3884 12 7 5.6466 -7.2422 -2.6059 13 6 6.3791 -8.5109 -2.6053 14 6 6.6347 -8.9529 -4.0476 15 1 7.2241 -8.1933 -4.5613 16 8 5.3864 -9.1239 -4.7218 17 6 7.4002 -10.2776 -4.0470 18 7 7.7492 -10.6406 -5.4228 19 6 8.4414 -11.7957 -5.6716 20 1 8.7303 -12.4389 -4.8535 21 6 8.7715 -12.1398 -6.9751 22 7 9.4372 -13.2498 -7.2142 23 14 8.2712 -11.0276 -8.3901 24 1 9.3462 -10.0349 -8.6434 25 1 8.0555 -11.8458 -9.6104 26 1 7.0142 -10.3180 -8.0413 27 6 4.2398 -2.4094 0.0073 28 6 3.5523 -1.2116 0.0006 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8899 32 1 2.3793 1.5832 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1383 0.5139 35 1 0.3902 -2.4156 -0.0005 36 1 1.6256 -4.5441 0.0020 37 1 3.7108 -5.6707 0.5166 38 1 5.2523 -4.7808 0.5169 39 1 5.1449 -4.5937 -1.9534 40 1 3.6034 -5.4836 -1.9537 41 1 5.4042 -6.8225 -3.4461 42 1 5.7899 -9.2703 -2.0913 43 1 7.3314 -8.3804 -2.0914 44 1 4.8090 -9.7865 -4.3183 45 1 8.3107 -10.1708 -3.4573 46 1 6.7754 -11.0581 -3.6127 47 1 7.4894 -10.0631 -6.1574 48 1 9.6683 -13.4901 -8.1251 49 1 5.3197 -2.4116 0.0125 50 1 4.0942 -0.2774 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732648067.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = -74.957029 kcal Electronic energy + Delta-G solvation = -27196.724878 eV Core-core repulsion = 23222.853857 eV Total energy + Delta-G solvation = -3973.871020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95517 -40.42519 -39.01267 -37.50093 -36.20576 -35.24352 -34.20085 -33.48783 -32.00050 -31.18942 -29.98288 -28.97427 -27.46359 -26.05286 -24.28707 -23.45668 -23.22262 -22.83624 -21.37899 -20.98296 -19.78759 -18.39886 -18.14686 -17.57407 -17.28795 -16.86891 -16.52933 -16.30619 -16.16318 -15.95161 -15.86669 -15.43437 -15.14566 -14.93487 -14.87796 -14.44463 -14.37916 -14.28829 -14.11331 -13.72668 -13.68622 -13.45492 -13.32996 -13.12315 -12.98110 -12.80734 -12.78483 -12.73745 -12.23777 -12.12296 -12.04172 -11.88172 -11.82665 -11.54017 -11.18676 -11.01851 -10.82211 -10.49391 -10.09014 -9.77908 -9.32313 -8.11251 -8.03896 -5.37923 0.58674 0.68007 1.40082 1.42577 1.51018 1.68684 2.18502 2.29215 2.48673 2.98503 3.26263 3.38715 3.53351 3.77690 3.94247 3.98730 4.09050 4.12501 4.17216 4.20314 4.22147 4.23082 4.42651 4.45083 4.52085 4.60878 4.62487 4.69402 4.71311 4.78332 4.80808 4.88655 4.89317 4.92489 4.93250 5.05431 5.18207 5.22465 5.26023 5.43427 5.43535 5.56202 5.73217 5.89292 6.01160 6.19408 6.39204 6.58003 6.59131 6.76056 7.07054 7.29020 7.82129 8.01640 9.17373 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.001505 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.229726 B =18600.982091 C =19139.791352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.648 5.648 3 C 0.089 3.911 4 C 0.197 3.803 5 C -0.204 4.204 6 C -0.074 4.074 7 C -0.148 4.148 8 C -0.050 4.050 9 C -0.124 4.124 10 C 0.509 3.491 11 O -0.588 6.588 12 N -0.714 5.714 13 C 0.099 3.901 14 C 0.106 3.894 15 H 0.110 0.890 16 O -0.563 6.563 17 C 0.123 3.877 18 N -0.752 5.752 19 C -0.240 4.240 20 H 0.056 0.944 21 C -0.062 4.062 22 N -0.983 5.983 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.251 1.251 27 C -0.074 4.074 28 C -0.205 4.205 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.416 0.584 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.387 0.613 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.369 0.631 48 H 0.258 0.742 49 H 0.130 0.870 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.598 33.541 15.927 42.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.360 5.360 3 C -0.054 4.054 4 C 0.095 3.905 5 C -0.226 4.226 6 C -0.092 4.092 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.163 4.163 10 C 0.297 3.703 11 O -0.468 6.468 12 N -0.367 5.367 13 C -0.026 4.026 14 C 0.046 3.954 15 H 0.128 0.872 16 O -0.370 6.370 17 C -0.004 4.004 18 N -0.398 5.398 19 C -0.371 4.371 20 H 0.074 0.926 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.175 1.175 27 C -0.093 4.093 28 C -0.228 4.228 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.253 0.747 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.237 0.763 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.203 0.797 48 H 0.067 0.933 49 H 0.148 0.852 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.151 33.627 16.348 42.474 hybrid contribution -0.095 -0.424 -0.896 0.995 sum -20.246 33.203 15.452 41.846 Atomic orbital electron populations 1.21705 0.78553 1.03594 1.01185 1.46580 1.05828 1.03276 1.80307 1.21785 0.97606 0.84450 1.01566 1.18053 0.91606 0.86399 0.94426 1.20797 1.00110 0.91107 1.10580 1.20980 0.93578 0.97862 0.96827 1.19635 0.93786 0.94553 1.07032 1.20085 0.99899 0.93674 0.95119 1.21669 1.01928 0.93144 0.99606 1.21329 0.78809 0.87285 0.82880 1.90697 1.56627 1.66678 1.32820 1.45864 1.57765 1.23613 1.09425 1.21802 0.97591 0.86528 0.96662 1.22142 0.85414 0.96342 0.91466 0.87235 1.86526 1.28794 1.63959 1.57695 1.21411 0.97681 0.95200 0.86073 1.42548 1.68065 1.25118 1.04118 1.19049 1.26467 0.98409 0.93162 0.92592 1.25521 1.00827 0.98983 1.00048 1.69889 1.46373 1.26707 1.20374 0.85368 0.79144 0.78363 0.78677 1.20327 1.22252 1.17550 1.20990 1.00077 0.91370 0.96815 1.20854 0.92263 0.99049 1.10589 0.92827 0.89133 0.92845 0.93188 0.89969 0.91267 0.85316 0.85235 0.91690 0.91678 0.87039 0.87046 0.74711 0.91197 0.90882 0.76328 0.94435 0.94849 0.79740 0.93278 0.85193 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 9.40 127.77 1.20 1.86 16 2 N -0.65 -7.42 3.41 -747.31 -2.55 -9.97 16 3 C 0.09 0.62 10.16 127.77 1.30 1.92 16 4 C 0.20 3.00 6.55 38.21 0.25 3.25 16 5 C -0.20 -3.06 9.31 22.40 0.21 -2.85 16 6 C -0.07 -1.14 9.69 22.25 0.22 -0.92 16 7 C -0.15 -2.38 5.14 -19.84 -0.10 -2.48 16 8 C -0.05 -0.85 4.63 29.85 0.14 -0.71 16 9 C -0.12 -1.80 5.68 29.85 0.17 -1.63 16 10 C 0.51 10.99 7.83 87.66 0.69 11.67 16 11 O -0.59 -17.88 15.98 -3.03 -0.05 -17.93 16 12 N -0.71 -13.74 5.45 -463.06 -2.52 -16.26 16 13 C 0.10 2.27 5.34 86.38 0.46 2.73 16 14 C 0.11 2.75 3.08 30.59 0.09 2.84 16 15 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 16 O -0.56 -14.42 13.03 -148.98 -1.94 -16.36 16 17 C 0.12 4.38 5.90 86.38 0.51 4.89 16 18 N -0.75 -34.66 5.35 -343.44 -1.84 -36.50 16 19 C -0.24 -13.77 10.47 84.03 0.88 -12.89 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 21 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 22 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 23 Si 0.96 45.70 27.73 68.60 1.90 47.61 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 27 C -0.07 -1.13 9.69 22.25 0.22 -0.91 16 28 C -0.21 -3.04 9.21 22.40 0.21 -2.83 16 29 H 0.05 0.38 7.95 -2.39 -0.02 0.36 16 30 H 0.09 0.29 7.79 -2.39 -0.02 0.27 16 31 H 0.05 0.39 7.95 -2.39 -0.02 0.37 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.29 7.92 -2.39 -0.02 0.27 16 34 H 0.07 0.47 6.20 -2.38 -0.01 0.46 16 35 H 0.13 1.56 6.73 -2.91 -0.02 1.54 16 36 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.06 1.23 8.04 -2.39 -0.02 1.22 16 38 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 39 H 0.11 1.25 8.14 -2.38 -0.02 1.24 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.42 6.28 8.35 -92.71 -0.77 5.50 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.39 8.04 9.05 -74.06 -0.67 7.37 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.37 16.43 5.53 -92.71 -0.51 15.92 16 48 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 49 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 50 H 0.13 1.53 6.14 -2.91 -0.02 1.51 16 Total: -1.00 -77.64 410.55 -0.85 -78.49 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.06 Total: 33.27 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.90 Total: 0.72 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -6.61 Total: -125.81 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.99 Total: -34.29 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.61 kcal Total: -77.64 -0.85 -78.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732648067.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.536 kcal (2) G-P(sol) polarization free energy of solvation -77.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds