Wall clock time and date at job start Tue Mar 31 2020 18:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00041 * 2 1 4 4 C 1.46906 * 111.00098 * 123.95634 * 2 1 3 5 5 C 1.52994 * 109.47169 * 66.04541 * 4 2 1 6 6 C 1.50707 * 109.47247 * 180.02562 * 5 4 2 7 7 C 1.38352 * 119.85659 * 89.99435 * 6 5 4 8 8 C 1.37956 * 120.14842 * 179.97438 * 7 6 5 9 9 C 1.39583 * 119.84929 * 0.03252 * 8 7 6 10 10 C 1.47846 * 120.14171 * 179.97438 * 9 8 7 11 11 O 1.21543 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47626 * 305.00563 * 14 13 12 16 16 O 1.42907 * 109.46828 * 65.00150 * 14 13 12 17 17 C 1.53003 * 109.47495 * 184.99999 * 14 13 12 18 18 N 1.46497 * 109.47011 * 180.02562 * 17 14 13 19 19 C 1.36937 * 119.99663 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00303 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00073 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46981 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47155 * 119.99567 * 23 21 19 26 26 H 1.48496 * 109.47050 * 239.99747 * 23 21 19 27 27 C 1.39580 * 119.70996 * 0.24334 * 9 8 7 28 28 C 1.37961 * 119.85138 * 359.47415 * 27 9 8 29 29 H 1.09000 * 109.46934 * 296.04012 * 1 2 3 30 30 H 1.08990 * 109.47519 * 56.04560 * 1 2 3 31 31 H 1.09011 * 109.47053 * 176.05028 * 1 2 3 32 32 H 1.08998 * 109.47242 * 183.95216 * 3 2 1 33 33 H 1.09000 * 109.47163 * 303.95853 * 3 2 1 34 34 H 1.09004 * 109.46771 * 63.95500 * 3 2 1 35 35 H 1.09001 * 109.46640 * 306.04406 * 4 2 1 36 36 H 1.08996 * 109.46710 * 186.04926 * 4 2 1 37 37 H 1.08993 * 109.47610 * 60.00087 * 5 4 2 38 38 H 1.09007 * 109.47222 * 299.99995 * 5 4 2 39 39 H 1.08004 * 119.92940 * 359.97438 * 7 6 5 40 40 H 1.07999 * 120.07546 * 180.02562 * 8 7 6 41 41 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 43 43 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 44 44 H 0.96695 * 113.99704 * 60.00344 * 16 14 13 45 45 H 1.08994 * 109.47229 * 300.00382 * 17 14 13 46 46 H 1.08998 * 109.46376 * 59.99941 * 17 14 13 47 47 H 0.96997 * 120.00348 * 0.02562 * 18 17 14 48 48 H 0.96997 * 120.00358 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.06620 * 179.75266 * 27 9 8 50 50 H 1.08001 * 119.92467 * 180.27178 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1711 -3.0284 2.1376 7 6 1.3937 -3.2027 3.2688 8 6 1.8815 -3.9214 4.3406 9 6 3.1625 -4.4726 4.2823 10 6 3.6918 -5.2435 5.4275 11 8 3.0113 -5.3980 6.4227 12 7 4.9290 -5.7749 5.3679 13 6 5.4538 -6.5383 6.5028 14 6 6.8672 -7.0263 6.1793 15 1 6.8526 -7.5895 5.2462 16 8 7.7397 -5.9026 6.0437 17 6 7.3674 -7.9267 7.3107 18 7 8.7211 -8.3935 7.0012 19 6 9.3773 -9.2187 7.8750 20 1 8.8971 -9.5251 8.7925 21 6 10.6602 -9.6605 7.5820 22 7 11.2457 -9.2868 6.4641 23 14 11.5557 -10.7857 8.7744 24 1 10.6865 -11.0556 9.9478 25 1 11.8837 -12.0654 8.0960 26 1 12.8087 -10.1301 9.2274 27 6 3.9437 -4.2881 3.1404 28 6 3.4416 -3.5722 2.0733 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5739 -0.8523 31 1 -0.3634 -1.0253 -0.0708 32 1 3.0827 1.3432 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8723 0.9234 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6611 1.1756 37 1 2.0658 -2.6214 0.0452 38 1 0.5472 -2.3475 0.9323 39 1 0.4029 -2.7753 3.3129 40 1 1.2735 -4.0571 5.2229 41 1 5.4722 -5.6513 4.5738 42 1 5.4831 -5.9012 7.3867 43 1 4.8080 -7.3954 6.6938 44 1 7.8018 -5.3549 6.8381 45 1 7.3821 -7.3635 8.2437 46 1 6.7019 -8.7837 7.4141 47 1 9.1526 -8.1180 6.1773 48 1 12.1420 -9.5958 6.2592 49 1 4.9372 -4.7087 3.0907 50 1 4.0434 -3.4325 1.1874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732659936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:06 Heat of formation + Delta-G solvation = -50.793855 kcal Electronic energy + Delta-G solvation = -27371.157586 eV Core-core repulsion = 23398.334360 eV Total energy + Delta-G solvation = -3972.823226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46278 -39.10696 -37.91529 -37.48963 -34.51512 -34.02895 -33.54185 -31.44625 -31.18933 -29.86491 -28.71552 -28.08616 -25.91139 -24.93531 -23.03003 -23.00187 -22.21515 -21.48335 -21.28267 -20.26555 -18.31208 -17.17137 -16.63499 -16.48201 -16.03546 -15.99424 -15.71279 -15.47155 -15.06134 -14.99504 -14.79379 -14.49239 -14.45969 -13.91794 -13.75070 -13.56655 -13.37056 -13.25701 -12.97166 -12.86731 -12.65147 -12.39106 -12.36319 -12.25020 -11.99322 -11.84604 -11.64253 -11.55296 -11.15027 -10.96911 -10.84590 -10.64128 -10.18429 -10.11771 -9.82333 -9.51771 -9.31966 -9.25211 -8.99853 -8.91927 -8.87859 -6.95138 -5.77448 -3.07152 0.54269 1.05439 2.66602 3.04380 3.40065 3.42676 3.48326 3.50604 3.62150 4.34334 4.38391 4.51163 4.55447 4.57132 4.64849 4.68652 4.72504 4.76110 4.86631 4.87910 5.00350 5.05080 5.06651 5.13255 5.18220 5.22999 5.37001 5.39372 5.42949 5.50545 5.54505 5.59245 5.65671 5.67823 5.76859 5.92809 5.97481 6.06935 6.17819 6.19581 6.34219 6.47199 6.48128 6.49443 6.56565 6.65624 7.41046 7.68002 7.91966 8.10972 8.40674 9.52567 10.08977 10.44944 11.44919 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.001562 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.085642 B =17926.009380 C =18699.201572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.549 5.549 3 C 0.023 3.977 4 C 0.059 3.941 5 C -0.080 4.080 6 C -0.060 4.060 7 C -0.126 4.126 8 C -0.058 4.058 9 C -0.135 4.135 10 C 0.555 3.445 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.090 3.910 14 C 0.089 3.911 15 H 0.104 0.896 16 O -0.552 6.552 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.081 4.081 28 C -0.122 4.122 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.374 0.626 45 H 0.023 0.977 46 H 0.029 0.971 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.129 0.871 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.083 19.993 -13.820 33.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.118 4.118 6 C -0.061 4.061 7 C -0.144 4.144 8 C -0.077 4.077 9 C -0.138 4.138 10 C 0.342 3.658 11 O -0.421 6.421 12 N -0.368 5.368 13 C -0.035 4.035 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.100 4.100 28 C -0.140 4.140 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.240 0.760 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.221 0.779 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.224 0.776 48 H 0.065 0.935 49 H 0.147 0.853 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.270 19.294 -13.977 33.303 hybrid contribution 0.618 0.062 1.360 1.495 sum -22.652 19.356 -12.617 32.357 Atomic orbital electron populations 1.22468 0.87380 1.02524 1.00564 1.61982 1.08109 1.14009 1.43158 1.22390 1.00969 0.88544 1.00572 1.22134 1.00644 0.92754 0.91344 1.20653 1.01373 0.93472 0.96288 1.20036 0.94190 0.96615 0.95245 1.21011 1.00203 1.00117 0.93097 1.21263 0.94054 0.93883 0.98484 1.19984 0.96246 1.02526 0.95047 1.18297 0.81446 0.79088 0.86957 1.90767 1.58290 1.60130 1.32868 1.45859 1.16140 1.54507 1.20250 1.22146 0.95952 0.96402 0.88966 1.22394 0.86002 0.87539 1.01183 0.87775 1.86571 1.67539 1.40194 1.41428 1.21191 0.89290 0.95304 0.94433 1.42230 1.11950 1.57809 1.25060 1.19270 0.96812 1.20973 1.00434 0.91147 1.24758 0.97346 1.01076 0.97650 1.69684 1.14796 1.48925 1.24361 0.86113 0.79665 0.80239 0.80134 1.20536 1.21818 1.21825 1.21380 0.99267 0.96930 0.92424 1.21017 0.95433 0.98549 0.98958 0.95565 0.91348 0.90978 0.91157 0.91244 0.95590 0.94465 0.90343 0.89705 0.90683 0.85584 0.84665 0.75980 0.90891 0.90249 0.77877 0.95905 0.95324 0.77646 0.93524 0.85273 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.06 0.56 0.65 16 2 N -0.55 -3.38 5.02 -251.26 -1.26 -4.64 16 3 C 0.02 0.12 9.57 60.06 0.57 0.69 16 4 C 0.06 0.36 4.94 -3.82 -0.02 0.34 16 5 C -0.08 -0.46 5.26 -27.88 -0.15 -0.61 16 6 C -0.06 -0.44 5.14 -104.53 -0.54 -0.98 16 7 C -0.13 -1.00 9.68 -39.64 -0.38 -1.38 16 8 C -0.06 -0.58 9.60 -39.18 -0.38 -0.96 16 9 C -0.13 -1.48 5.87 -104.96 -0.62 -2.09 16 10 C 0.55 7.43 7.77 -12.33 -0.10 7.33 16 11 O -0.54 -9.06 16.35 5.33 0.09 -8.98 16 12 N -0.72 -8.63 5.45 -61.26 -0.33 -8.97 16 13 C 0.09 1.18 5.31 -4.05 -0.02 1.16 16 14 C 0.09 1.35 3.09 -26.73 -0.08 1.26 16 15 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 16 O -0.55 -8.66 13.03 -35.23 -0.46 -9.12 16 17 C 0.13 2.44 5.92 -4.04 -0.02 2.41 16 18 N -0.73 -18.28 5.49 -59.91 -0.33 -18.61 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 23 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C -0.08 -0.72 9.54 -39.18 -0.37 -1.10 16 28 C -0.12 -0.93 9.68 -39.64 -0.38 -1.31 16 29 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.07 0.32 6.47 -51.92 -0.34 -0.02 16 32 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 34 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 36 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.07 0.39 6.49 -51.92 -0.34 0.05 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.14 1.38 7.65 -52.49 -0.40 0.98 16 41 H 0.40 4.19 6.51 -40.82 -0.27 3.93 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.37 4.94 9.04 45.56 0.41 5.35 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.39 10.49 7.54 -40.82 -0.31 10.18 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.13 0.96 6.41 -52.49 -0.34 0.62 16 50 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 413.45 15.07 6.23 6.23 Total: -1.00 -34.22 413.45 -9.98 -44.20 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.45 Total: 12.04 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.17 Total: -2.01 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -1.20 Total: -59.77 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.37 Total: -18.10 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.22 -9.98 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732659936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.592 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds