Wall clock time and date at job start Tue Mar 31 2020 18:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00041 * 2 1 4 4 C 1.46906 * 111.00098 * 123.95634 * 2 1 3 5 5 C 1.52994 * 109.47169 * 66.04541 * 4 2 1 6 6 C 1.50707 * 109.47247 * 180.02562 * 5 4 2 7 7 C 1.38352 * 119.85659 * 89.99435 * 6 5 4 8 8 C 1.37956 * 120.14842 * 179.97438 * 7 6 5 9 9 C 1.39583 * 119.84929 * 0.03252 * 8 7 6 10 10 C 1.47846 * 120.14171 * 179.97438 * 9 8 7 11 11 O 1.21543 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47626 * 305.00563 * 14 13 12 16 16 O 1.42907 * 109.46828 * 65.00150 * 14 13 12 17 17 C 1.53003 * 109.47495 * 184.99999 * 14 13 12 18 18 N 1.46497 * 109.47011 * 180.02562 * 17 14 13 19 19 C 1.36937 * 119.99663 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00303 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00073 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46981 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47155 * 119.99567 * 23 21 19 26 26 H 1.48496 * 109.47050 * 239.99747 * 23 21 19 27 27 C 1.39580 * 119.70996 * 0.24334 * 9 8 7 28 28 C 1.37961 * 119.85138 * 359.47415 * 27 9 8 29 29 H 1.09000 * 109.46934 * 296.04012 * 1 2 3 30 30 H 1.08990 * 109.47519 * 56.04560 * 1 2 3 31 31 H 1.09011 * 109.47053 * 176.05028 * 1 2 3 32 32 H 1.08998 * 109.47242 * 183.95216 * 3 2 1 33 33 H 1.09000 * 109.47163 * 303.95853 * 3 2 1 34 34 H 1.09004 * 109.46771 * 63.95500 * 3 2 1 35 35 H 1.09001 * 109.46640 * 306.04406 * 4 2 1 36 36 H 1.08996 * 109.46710 * 186.04926 * 4 2 1 37 37 H 1.08993 * 109.47610 * 60.00087 * 5 4 2 38 38 H 1.09007 * 109.47222 * 299.99995 * 5 4 2 39 39 H 1.08004 * 119.92940 * 359.97438 * 7 6 5 40 40 H 1.07999 * 120.07546 * 180.02562 * 8 7 6 41 41 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 43 43 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 44 44 H 0.96695 * 113.99704 * 60.00344 * 16 14 13 45 45 H 1.08994 * 109.47229 * 300.00382 * 17 14 13 46 46 H 1.08998 * 109.46376 * 59.99941 * 17 14 13 47 47 H 0.96997 * 120.00348 * 0.02562 * 18 17 14 48 48 H 0.96997 * 120.00358 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.06620 * 179.75266 * 27 9 8 50 50 H 1.08001 * 119.92467 * 180.27178 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1711 -3.0284 2.1376 7 6 1.3937 -3.2027 3.2688 8 6 1.8815 -3.9214 4.3406 9 6 3.1625 -4.4726 4.2823 10 6 3.6918 -5.2435 5.4275 11 8 3.0113 -5.3980 6.4227 12 7 4.9290 -5.7749 5.3679 13 6 5.4538 -6.5383 6.5028 14 6 6.8672 -7.0263 6.1793 15 1 6.8526 -7.5895 5.2462 16 8 7.7397 -5.9026 6.0437 17 6 7.3674 -7.9267 7.3107 18 7 8.7211 -8.3935 7.0012 19 6 9.3773 -9.2187 7.8750 20 1 8.8971 -9.5251 8.7925 21 6 10.6602 -9.6605 7.5820 22 7 11.2457 -9.2868 6.4641 23 14 11.5557 -10.7857 8.7744 24 1 10.6865 -11.0556 9.9478 25 1 11.8837 -12.0654 8.0960 26 1 12.8087 -10.1301 9.2274 27 6 3.9437 -4.2881 3.1404 28 6 3.4416 -3.5722 2.0733 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5739 -0.8523 31 1 -0.3634 -1.0253 -0.0708 32 1 3.0827 1.3432 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8723 0.9234 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6611 1.1756 37 1 2.0658 -2.6214 0.0452 38 1 0.5472 -2.3475 0.9323 39 1 0.4029 -2.7753 3.3129 40 1 1.2735 -4.0571 5.2229 41 1 5.4722 -5.6513 4.5738 42 1 5.4831 -5.9012 7.3867 43 1 4.8080 -7.3954 6.6938 44 1 7.8018 -5.3549 6.8381 45 1 7.3821 -7.3635 8.2437 46 1 6.7019 -8.7837 7.4141 47 1 9.1526 -8.1180 6.1773 48 1 12.1420 -9.5958 6.2592 49 1 4.9372 -4.7087 3.0907 50 1 4.0434 -3.4325 1.1874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732659936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:05 Heat of formation + Delta-G solvation = -77.043797 kcal Electronic energy + Delta-G solvation = -27372.295869 eV Core-core repulsion = 23398.334360 eV Total energy + Delta-G solvation = -3973.961509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34615 -39.92016 -38.92229 -38.26643 -36.09920 -35.43629 -34.17690 -33.19551 -31.99486 -30.91730 -29.76578 -28.45697 -27.22939 -25.87513 -24.50099 -23.66515 -23.14942 -22.77666 -21.90434 -21.13341 -19.39773 -19.03715 -17.78046 -17.28201 -17.08321 -16.76241 -16.45019 -16.43675 -16.00203 -15.90044 -15.79477 -15.63867 -15.46966 -15.17640 -14.86422 -14.54773 -14.29165 -14.20082 -13.98939 -13.95523 -13.71704 -13.29464 -13.20177 -12.95697 -12.85611 -12.79031 -12.68998 -12.45982 -12.20958 -12.13053 -12.11930 -11.96372 -11.81753 -11.64538 -11.27855 -11.00392 -10.86979 -10.27718 -9.97214 -9.71922 -9.32056 -9.01370 -7.95309 -5.24739 -0.20122 0.40060 1.47914 1.48448 1.58644 1.77812 2.03123 2.55835 2.80342 3.03777 3.35695 3.44600 3.55763 3.66495 3.80243 3.95543 3.99165 4.01601 4.11186 4.19089 4.22047 4.32009 4.39098 4.40148 4.49504 4.50797 4.59714 4.62429 4.68587 4.71773 4.74813 4.82199 4.92708 4.95811 5.02555 5.03786 5.09189 5.18666 5.19970 5.26849 5.33021 5.37580 5.48435 5.59292 5.90876 6.06237 6.08989 6.25932 6.43749 6.77462 7.10279 7.33384 8.08368 8.31957 9.28021 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.001562 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.085642 B =17926.009380 C =18699.201572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.560 5.560 3 C 0.022 3.978 4 C 0.062 3.938 5 C -0.073 4.073 6 C -0.052 4.052 7 C -0.125 4.125 8 C -0.071 4.071 9 C -0.157 4.157 10 C 0.554 3.446 11 O -0.583 6.583 12 N -0.707 5.707 13 C 0.101 3.899 14 C 0.109 3.891 15 H 0.103 0.897 16 O -0.562 6.562 17 C 0.122 3.878 18 N -0.739 5.739 19 C -0.249 4.249 20 H 0.076 0.924 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.082 4.082 28 C -0.122 4.122 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.413 0.587 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.385 0.615 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.377 0.623 48 H 0.251 0.749 49 H 0.142 0.858 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.977 20.712 -14.639 34.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.284 5.284 3 C -0.126 4.126 4 C -0.066 4.066 5 C -0.111 4.111 6 C -0.053 4.053 7 C -0.143 4.143 8 C -0.090 4.090 9 C -0.160 4.160 10 C 0.343 3.657 11 O -0.465 6.465 12 N -0.359 5.359 13 C -0.023 4.023 14 C 0.049 3.951 15 H 0.121 0.879 16 O -0.369 6.369 17 C -0.006 4.006 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.094 0.906 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.100 4.100 28 C -0.140 4.140 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.251 0.749 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.234 0.766 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.210 0.790 48 H 0.060 0.940 49 H 0.159 0.841 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.192 20.030 -14.789 34.716 hybrid contribution 0.807 -0.077 1.565 1.762 sum -23.385 19.954 -13.224 33.465 Atomic orbital electron populations 1.22511 0.86727 1.03017 1.00804 1.62006 1.08832 1.14468 1.43099 1.22420 1.01074 0.88250 1.00837 1.22082 1.00461 0.92841 0.91226 1.20621 1.01914 0.92972 0.95570 1.20265 0.93933 0.95790 0.95350 1.21217 1.01132 0.99403 0.92506 1.21316 0.93929 0.94732 0.99034 1.19890 0.97150 1.03843 0.95079 1.18700 0.81194 0.78700 0.87128 1.90737 1.59330 1.61841 1.34563 1.45743 1.16001 1.53928 1.20208 1.21905 0.94503 0.96506 0.89428 1.22094 0.86716 0.86826 0.99502 0.87914 1.86550 1.67780 1.40239 1.42313 1.21395 0.86716 0.96188 0.96278 1.42398 1.13891 1.57691 1.24231 1.19684 0.97071 1.20547 1.00745 0.90594 1.25578 0.98432 1.03165 0.99461 1.69835 1.14956 1.50655 1.26296 0.85072 0.78264 0.77975 0.78414 1.19041 1.21984 1.22018 1.21530 0.99594 0.96914 0.91975 1.21303 0.95755 0.97753 0.99206 0.95617 0.90797 0.90425 0.91091 0.90548 0.95701 0.94931 0.90623 0.89278 0.89750 0.83594 0.85651 0.74868 0.90757 0.90429 0.76604 0.95125 0.94817 0.79020 0.93989 0.84059 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 127.69 1.19 1.33 16 2 N -0.56 -5.89 5.02 -948.86 -4.76 -10.65 16 3 C 0.02 0.20 9.57 127.69 1.22 1.42 16 4 C 0.06 0.63 4.94 86.30 0.43 1.06 16 5 C -0.07 -0.67 5.26 29.85 0.16 -0.51 16 6 C -0.05 -0.66 5.14 -19.81 -0.10 -0.76 16 7 C -0.12 -1.79 9.68 22.23 0.22 -1.57 16 8 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 9 C -0.16 -3.36 5.87 -20.09 -0.12 -3.48 16 10 C 0.55 14.80 7.77 86.79 0.67 15.48 16 11 O -0.58 -19.87 16.35 -3.85 -0.06 -19.93 16 12 N -0.71 -16.55 5.45 -466.00 -2.54 -19.09 16 13 C 0.10 2.59 5.31 86.38 0.46 3.05 16 14 C 0.11 3.20 3.09 30.59 0.09 3.29 16 15 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 16 O -0.56 -17.09 13.03 -148.98 -1.94 -19.03 16 17 C 0.12 4.59 5.92 86.38 0.51 5.10 16 18 N -0.74 -37.13 5.49 -343.46 -1.89 -39.02 16 19 C -0.25 -13.87 9.99 84.03 0.84 -13.04 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 23 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 C -0.08 -1.33 9.54 22.53 0.21 -1.12 16 28 C -0.12 -1.60 9.68 22.23 0.22 -1.39 16 29 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 31 H 0.08 0.52 6.47 -2.38 -0.02 0.50 16 32 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 33 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 34 H 0.02 0.22 8.14 -2.38 -0.02 0.20 16 35 H 0.03 0.36 8.12 -2.39 -0.02 0.34 16 36 H 0.08 0.81 8.06 -2.39 -0.02 0.79 16 37 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 38 H 0.08 0.64 6.49 -2.38 -0.02 0.63 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.13 2.65 7.65 -2.91 -0.02 2.63 16 41 H 0.41 8.10 6.51 -92.71 -0.60 7.49 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.39 9.75 9.04 -74.06 -0.67 9.08 16 45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.38 20.50 7.54 -92.71 -0.70 19.80 16 48 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.14 1.86 6.41 -2.91 -0.02 1.84 16 50 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -72.87 413.45 -3.22 -76.08 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -1.02 Total: 38.73 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.68 Total: 3.89 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -8.91 Total: -127.90 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -2.00 Total: -38.96 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -72.87 -3.22 -76.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732659936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.962 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds