Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34779 * 120.00312 * 2 1 4 4 O 1.21278 * 120.00243 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99705 * 0.02562 * 3 2 1 6 6 H 1.08998 * 115.57390 * 34.14437 * 5 3 2 7 7 C 1.52307 * 117.53746 * 179.97438 * 5 3 2 8 8 H 1.09001 * 115.91404 * 0.85232 * 7 5 3 9 9 C 1.52076 * 119.83773 * 216.45640 * 7 5 3 10 10 C 1.52868 * 110.51427 * 310.45003 * 9 7 5 11 11 C 1.53300 * 108.59147 * 305.11077 * 10 9 7 12 12 C 1.52875 * 108.58177 * 74.44559 * 11 10 9 13 13 C 1.51295 * 109.91103 * 305.75946 * 12 11 10 14 14 H 1.08995 * 113.81689 * 232.10015 * 13 12 11 15 15 C 1.46505 * 119.99879 * 180.02562 * 2 1 3 16 16 C 1.53506 * 114.17058 * 299.99410 * 15 2 1 17 17 N 1.47485 * 87.93184 * 87.62434 * 16 15 2 18 18 C 1.46893 * 111.00071 * 138.69991 * 17 16 15 19 19 C 1.50706 * 109.47176 * 170.00102 * 18 17 16 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00104 * 26 24 22 28 28 H 1.48498 * 109.47295 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47399 * 300.00615 * 26 24 22 30 30 C 1.47480 * 87.83306 * 27.00908 * 17 16 15 31 31 H 1.09000 * 109.47266 * 269.99574 * 1 2 3 32 32 H 1.08998 * 109.47269 * 29.99512 * 1 2 3 33 33 H 1.08994 * 109.47350 * 149.99289 * 1 2 3 34 34 H 1.08998 * 109.26424 * 70.72210 * 9 7 5 35 35 H 1.09007 * 109.26407 * 190.21777 * 9 7 5 36 36 H 1.08996 * 109.61832 * 64.84047 * 10 9 7 37 37 H 1.09007 * 109.61727 * 185.20065 * 10 9 7 38 38 H 1.08999 * 109.62067 * 194.17446 * 11 10 9 39 39 H 1.09000 * 109.61763 * 314.71666 * 11 10 9 40 40 H 1.09000 * 109.35882 * 65.68507 * 12 11 10 41 41 H 1.08999 * 109.35726 * 185.41047 * 12 11 10 42 42 H 1.09005 * 113.24991 * 167.04808 * 15 2 1 43 43 H 1.09004 * 113.47697 * 332.86187 * 16 15 2 44 44 H 1.08995 * 113.48186 * 202.38802 * 16 15 2 45 45 H 1.09001 * 109.46739 * 50.00511 * 18 17 16 46 46 H 1.09000 * 109.47767 * 290.00770 * 18 17 16 47 47 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 49 49 H 1.09004 * 113.47382 * 87.75687 * 30 17 16 50 50 H 1.09000 * 113.47980 * 218.22314 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4456 2.4728 0.5528 7 6 2.2029 3.7574 0.0012 8 1 3.2857 3.6331 -0.0135 9 6 1.7138 4.9650 0.7856 10 6 0.2491 5.2578 0.4601 11 6 0.1081 5.4168 -1.0581 12 6 0.1972 4.0337 -1.7031 13 6 1.4687 3.3413 -1.2639 14 1 2.0715 2.9629 -2.0894 15 6 2.1974 -1.2688 -0.0006 16 6 1.9053 -2.1637 1.2120 17 7 0.7722 -2.7280 0.4551 18 6 0.6877 -4.1828 0.6405 19 6 -0.6089 -4.6884 0.0622 20 8 -1.3858 -3.9130 -0.4540 21 7 -0.9051 -6.0020 0.1187 22 6 -2.0844 -6.4619 -0.4079 23 1 -2.7758 -5.7717 -0.8683 24 6 -2.3895 -7.8163 -0.3502 25 7 -1.5480 -8.6562 0.2095 26 14 -3.9967 -8.4430 -1.0670 27 1 -4.0495 -8.1248 -2.5165 28 1 -4.0824 -9.9135 -0.8790 29 1 -5.1360 -7.7887 -0.3747 30 6 1.5042 -2.3944 -0.7809 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 1.8122 4.7647 1.8525 35 1 2.3201 5.8326 0.5251 36 1 -0.3738 4.4308 0.8008 37 1 -0.0594 6.1774 0.9573 38 1 -0.8565 5.8677 -1.2908 39 1 0.9114 6.0493 -1.4359 40 1 -0.6615 3.4362 -1.3970 41 1 0.1950 4.1402 -2.7879 42 1 3.2578 -1.1533 -0.2250 43 1 1.6012 -1.6077 2.0988 44 1 2.6938 -2.8877 1.4174 45 1 0.7265 -4.4163 1.7045 46 1 1.5239 -4.6631 0.1324 47 1 -0.2839 -6.6218 0.5318 48 1 -1.7612 -9.6016 0.2502 49 1 2.1858 -3.1799 -1.1074 50 1 0.8603 -2.0339 -1.5831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733303216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -9.403545 kcal Electronic energy + Delta-G solvation = -29082.707971 eV Core-core repulsion = 25111.679563 eV Total energy + Delta-G solvation = -3971.028408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07706 -40.16468 -38.40320 -37.64720 -34.82884 -33.87607 -33.36321 -31.27697 -31.17390 -30.08604 -27.01068 -26.31024 -25.84395 -25.12744 -23.64401 -22.90038 -22.45924 -20.17939 -19.29773 -18.86084 -18.34391 -17.94954 -17.55564 -16.52130 -16.02698 -15.81951 -15.38009 -15.14513 -15.03291 -14.59037 -14.39228 -14.30748 -14.19722 -13.82822 -13.67447 -13.26137 -13.01600 -12.95266 -12.66497 -12.51246 -12.41628 -12.10348 -12.01438 -11.89983 -11.58761 -11.45860 -11.40739 -11.18733 -11.06740 -10.93958 -10.73099 -10.61254 -10.44960 -10.23152 -10.21151 -10.02211 -9.72908 -9.49388 -8.82084 -8.62406 -8.20988 -7.96410 -6.41735 -3.82636 2.34574 2.82960 3.19367 3.25072 3.29262 3.52744 3.90022 3.99265 4.20843 4.23419 4.37462 4.39718 4.47815 4.64554 4.68408 4.78195 4.85253 4.95757 5.01181 5.02965 5.18805 5.19800 5.26423 5.29836 5.37336 5.38440 5.41551 5.56228 5.59524 5.62228 5.65004 5.68509 5.70292 5.72946 5.77877 5.83346 5.90211 5.91140 5.93845 5.99891 6.07833 6.16324 6.26089 6.48678 6.57659 7.10985 7.39523 7.54483 8.05520 8.11608 8.61853 9.18051 9.54592 10.06711 10.76021 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002088 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.818865 B =13405.791138 C =14295.533793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.583 5.583 3 C 0.545 3.455 4 O -0.549 6.549 5 C -0.187 4.187 6 H 0.125 0.875 7 C -0.105 4.105 8 H 0.113 0.887 9 C -0.090 4.090 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.093 4.093 13 C -0.115 4.115 14 H 0.104 0.896 15 C 0.115 3.885 16 C -0.017 4.017 17 N -0.437 5.437 18 C 0.007 3.993 19 C 0.447 3.553 20 O -0.577 6.577 21 N -0.567 5.567 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 C -0.006 4.006 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.080 0.920 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.803 23.651 0.555 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.314 5.314 3 C 0.334 3.666 4 O -0.427 6.427 5 C -0.208 4.208 6 H 0.143 0.857 7 C -0.123 4.123 8 H 0.131 0.869 9 C -0.127 4.127 10 C -0.162 4.162 11 C -0.156 4.156 12 C -0.130 4.130 13 C -0.134 4.134 14 H 0.122 0.878 15 C 0.010 3.990 16 C -0.148 4.148 17 N -0.159 5.159 18 C -0.125 4.125 19 C 0.232 3.768 20 O -0.460 6.460 21 N -0.204 5.204 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.166 24.144 0.348 25.187 hybrid contribution 0.250 -1.638 -0.024 1.657 sum 7.416 22.506 0.325 23.698 Atomic orbital electron populations 1.21914 0.77905 1.03935 1.02539 1.47316 1.07643 1.04246 1.72174 1.19734 0.87167 0.84371 0.75320 1.90656 1.13985 1.87392 1.50696 1.22465 1.02628 0.89997 1.05704 0.85738 1.21897 0.99117 0.93056 0.98267 0.86928 1.20894 0.96179 0.96087 0.99522 1.21644 0.96539 1.01771 0.96282 1.21570 1.01820 0.96840 0.95403 1.20869 0.95605 0.95976 1.00578 1.21982 0.99804 1.00528 0.91112 0.87818 1.22044 0.96948 0.83074 0.96937 1.24339 0.94121 0.97665 0.98645 1.68861 1.31990 1.11366 1.03669 1.22515 0.98105 0.89908 1.01969 1.19650 0.88413 0.83139 0.85561 1.90503 1.51126 1.55569 1.48822 1.41870 1.19872 1.06040 1.52601 1.19632 0.96451 0.92241 1.34459 0.88031 1.25256 0.99373 0.95811 0.97567 1.69603 1.36467 1.03960 1.44406 0.85923 0.81520 0.77349 0.79454 1.19938 1.20998 1.19910 1.24286 0.96604 0.96568 0.96075 0.92541 0.91824 0.88217 0.91306 0.91031 0.91728 0.91640 0.91768 0.91610 0.91170 0.91089 0.87052 0.89555 0.90464 0.89409 0.92164 0.77561 0.91853 0.90243 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.10 59.84 0.54 1.50 16 2 N -0.58 -7.43 3.11 -173.63 -0.54 -7.97 16 3 C 0.55 7.13 7.46 -10.98 -0.08 7.05 16 4 O -0.55 -8.78 15.70 5.56 0.09 -8.70 16 5 C -0.19 -1.86 3.96 -91.78 -0.36 -2.23 16 6 H 0.12 1.11 6.39 -51.93 -0.33 0.78 16 7 C -0.10 -0.95 5.60 -91.92 -0.52 -1.46 16 8 H 0.11 1.19 7.55 -51.93 -0.39 0.80 16 9 C -0.09 -0.62 5.93 -27.27 -0.16 -0.79 16 10 C -0.12 -0.78 5.70 -26.64 -0.15 -0.93 16 11 C -0.12 -0.73 5.92 -26.64 -0.16 -0.88 16 12 C -0.09 -0.65 5.82 -27.66 -0.16 -0.81 16 13 C -0.12 -1.01 5.75 -91.61 -0.53 -1.54 16 14 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.12 1.49 4.67 -67.72 -0.32 1.17 16 16 C -0.02 -0.22 7.31 -7.55 -0.06 -0.28 16 17 N -0.44 -6.89 4.40 -246.12 -1.08 -7.98 16 18 C 0.01 0.12 5.30 -4.98 -0.03 0.10 16 19 C 0.45 10.43 7.85 -10.98 -0.09 10.35 16 20 O -0.58 -15.39 16.01 5.54 0.09 -15.31 16 21 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 26 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 30 C -0.01 -0.08 6.72 -7.55 -0.05 -0.13 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.63 6.64 -51.93 -0.34 0.29 16 33 H 0.10 1.47 5.68 -51.93 -0.29 1.17 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 7.12 -51.93 -0.37 0.06 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16 40 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.11 1.44 7.28 -51.93 -0.38 1.06 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 45 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 46 H 0.06 0.93 7.30 -51.93 -0.38 0.55 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 50 H 0.09 1.41 7.25 -51.93 -0.38 1.03 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -32.33 393.95 -10.35 -42.68 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.13 Total: 10.32 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.35 Total: 3.17 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.96 Total: -54.10 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.18 Total: -24.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.33 -10.35 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733303216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.276 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds