Wall clock time and date at job start Tue Mar 31 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34779 * 120.00312 * 2 1 4 4 O 1.21278 * 120.00243 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99705 * 0.02562 * 3 2 1 6 6 H 1.08998 * 115.57390 * 34.14437 * 5 3 2 7 7 C 1.52307 * 117.53746 * 179.97438 * 5 3 2 8 8 H 1.09001 * 115.91404 * 0.85232 * 7 5 3 9 9 C 1.52076 * 119.83773 * 216.45640 * 7 5 3 10 10 C 1.52868 * 110.51427 * 310.45003 * 9 7 5 11 11 C 1.53300 * 108.59147 * 305.11077 * 10 9 7 12 12 C 1.52875 * 108.58177 * 74.44559 * 11 10 9 13 13 C 1.51295 * 109.91103 * 305.75946 * 12 11 10 14 14 H 1.08995 * 113.81689 * 232.10015 * 13 12 11 15 15 C 1.46505 * 119.99879 * 180.02562 * 2 1 3 16 16 C 1.53506 * 114.17058 * 299.99410 * 15 2 1 17 17 N 1.47485 * 87.93184 * 87.62434 * 16 15 2 18 18 C 1.46893 * 111.00071 * 138.69991 * 17 16 15 19 19 C 1.50706 * 109.47176 * 170.00102 * 18 17 16 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00104 * 26 24 22 28 28 H 1.48498 * 109.47295 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47399 * 300.00615 * 26 24 22 30 30 C 1.47480 * 87.83306 * 27.00908 * 17 16 15 31 31 H 1.09000 * 109.47266 * 269.99574 * 1 2 3 32 32 H 1.08998 * 109.47269 * 29.99512 * 1 2 3 33 33 H 1.08994 * 109.47350 * 149.99289 * 1 2 3 34 34 H 1.08998 * 109.26424 * 70.72210 * 9 7 5 35 35 H 1.09007 * 109.26407 * 190.21777 * 9 7 5 36 36 H 1.08996 * 109.61832 * 64.84047 * 10 9 7 37 37 H 1.09007 * 109.61727 * 185.20065 * 10 9 7 38 38 H 1.08999 * 109.62067 * 194.17446 * 11 10 9 39 39 H 1.09000 * 109.61763 * 314.71666 * 11 10 9 40 40 H 1.09000 * 109.35882 * 65.68507 * 12 11 10 41 41 H 1.08999 * 109.35726 * 185.41047 * 12 11 10 42 42 H 1.09005 * 113.24991 * 167.04808 * 15 2 1 43 43 H 1.09004 * 113.47697 * 332.86187 * 16 15 2 44 44 H 1.08995 * 113.48186 * 202.38802 * 16 15 2 45 45 H 1.09001 * 109.46739 * 50.00511 * 18 17 16 46 46 H 1.09000 * 109.47767 * 290.00770 * 18 17 16 47 47 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 49 49 H 1.09004 * 113.47382 * 87.75687 * 30 17 16 50 50 H 1.09000 * 113.47980 * 218.22314 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4456 2.4728 0.5528 7 6 2.2029 3.7574 0.0012 8 1 3.2857 3.6331 -0.0135 9 6 1.7138 4.9650 0.7856 10 6 0.2491 5.2578 0.4601 11 6 0.1081 5.4168 -1.0581 12 6 0.1972 4.0337 -1.7031 13 6 1.4687 3.3413 -1.2639 14 1 2.0715 2.9629 -2.0894 15 6 2.1974 -1.2688 -0.0006 16 6 1.9053 -2.1637 1.2120 17 7 0.7722 -2.7280 0.4551 18 6 0.6877 -4.1828 0.6405 19 6 -0.6089 -4.6884 0.0622 20 8 -1.3858 -3.9130 -0.4540 21 7 -0.9051 -6.0020 0.1187 22 6 -2.0844 -6.4619 -0.4079 23 1 -2.7758 -5.7717 -0.8683 24 6 -2.3895 -7.8163 -0.3502 25 7 -1.5480 -8.6562 0.2095 26 14 -3.9967 -8.4430 -1.0670 27 1 -4.0495 -8.1248 -2.5165 28 1 -4.0824 -9.9135 -0.8790 29 1 -5.1360 -7.7887 -0.3747 30 6 1.5042 -2.3944 -0.7809 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 1.8122 4.7647 1.8525 35 1 2.3201 5.8326 0.5251 36 1 -0.3738 4.4308 0.8008 37 1 -0.0594 6.1774 0.9573 38 1 -0.8565 5.8677 -1.2908 39 1 0.9114 6.0493 -1.4359 40 1 -0.6615 3.4362 -1.3970 41 1 0.1950 4.1402 -2.7879 42 1 3.2578 -1.1533 -0.2250 43 1 1.6012 -1.6077 2.0988 44 1 2.6938 -2.8877 1.4174 45 1 0.7265 -4.4163 1.7045 46 1 1.5239 -4.6631 0.1324 47 1 -0.2839 -6.6218 0.5318 48 1 -1.7612 -9.6016 0.2502 49 1 2.1858 -3.1799 -1.1074 50 1 0.8603 -2.0339 -1.5831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733303216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:21 Heat of formation + Delta-G solvation = -30.291919 kcal Electronic energy + Delta-G solvation = -29083.613759 eV Core-core repulsion = 25111.679563 eV Total energy + Delta-G solvation = -3971.934196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10461 -41.11613 -39.79372 -39.03843 -36.06260 -35.77064 -34.00150 -33.27054 -31.74002 -31.43104 -28.16460 -27.52067 -26.88508 -26.51996 -24.93935 -23.51171 -23.29674 -21.09376 -21.07176 -19.91369 -19.77200 -19.09105 -18.57033 -17.82145 -17.45021 -16.94051 -16.55973 -16.50521 -16.18394 -16.07254 -15.52574 -15.39544 -14.92043 -14.84336 -14.82158 -14.61052 -14.29774 -14.08050 -13.64918 -13.48339 -13.40299 -13.25902 -13.15551 -13.00479 -12.90976 -12.69273 -12.62120 -12.43440 -12.19853 -12.06757 -11.99677 -11.91442 -11.74346 -11.47909 -11.19584 -11.04614 -10.70866 -10.58635 -10.36652 -9.99857 -9.76065 -9.66667 -8.45683 -5.94169 1.36597 1.39719 1.41314 1.52133 1.85194 2.07754 2.28730 2.75793 2.80184 3.20531 3.35823 3.38200 3.47908 3.70921 3.74971 3.75694 3.96311 4.05921 4.13813 4.18983 4.25442 4.31655 4.35774 4.39118 4.41435 4.45601 4.52344 4.58716 4.62874 4.67183 4.70470 4.78687 4.80702 4.85580 4.95586 5.06074 5.10519 5.13670 5.26630 5.28847 5.33997 5.35686 5.41213 5.45104 5.53815 5.54728 5.84476 6.06099 6.37511 6.61845 7.08636 7.14172 7.58381 8.14449 8.71511 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002088 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.818865 B =13405.791138 C =14295.533793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.584 5.584 3 C 0.542 3.458 4 O -0.583 6.583 5 C -0.194 4.194 6 H 0.138 0.862 7 C -0.102 4.102 8 H 0.093 0.907 9 C -0.087 4.087 10 C -0.123 4.123 11 C -0.117 4.117 12 C -0.092 4.092 13 C -0.107 4.107 14 H 0.091 0.909 15 C 0.119 3.881 16 C -0.006 4.006 17 N -0.460 5.460 18 C 0.020 3.980 19 C 0.444 3.556 20 O -0.615 6.615 21 N -0.577 5.577 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.272 1.272 30 C -0.004 4.004 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.094 0.906 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 24.540 0.931 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.314 5.314 3 C 0.332 3.668 4 O -0.464 6.464 5 C -0.214 4.214 6 H 0.156 0.844 7 C -0.121 4.121 8 H 0.112 0.888 9 C -0.124 4.124 10 C -0.161 4.161 11 C -0.154 4.154 12 C -0.129 4.129 13 C -0.126 4.126 14 H 0.110 0.890 15 C 0.013 3.987 16 C -0.136 4.136 17 N -0.183 5.183 18 C -0.112 4.112 19 C 0.232 3.768 20 O -0.500 6.500 21 N -0.215 5.215 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.134 4.134 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.112 0.888 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.069 25.031 0.738 26.020 hybrid contribution 0.334 -1.870 -0.155 1.906 sum 7.403 23.161 0.582 24.322 Atomic orbital electron populations 1.21827 0.77465 1.03656 1.02491 1.47416 1.07893 1.04333 1.71796 1.20241 0.86930 0.85229 0.74380 1.90634 1.15475 1.87901 1.52357 1.22477 1.03014 0.88787 1.07158 0.84419 1.21921 0.98057 0.93324 0.98750 0.88843 1.20913 0.96995 0.95306 0.99184 1.21651 0.95686 1.02276 0.96473 1.21567 1.02516 0.96136 0.95180 1.20902 0.94469 0.96477 1.01089 1.22032 1.00386 0.99782 0.90364 0.89032 1.21999 0.96863 0.82974 0.96815 1.24354 0.93499 0.97616 0.98119 1.68839 1.34048 1.10256 1.05118 1.22401 0.95006 0.91027 1.02756 1.20729 0.89896 0.82153 0.84050 1.90475 1.53021 1.56353 1.50191 1.41950 1.19487 1.06967 1.53116 1.19599 0.97617 0.92677 1.36162 0.90371 1.26030 1.02454 0.95472 0.97486 1.69665 1.37711 1.04302 1.44594 0.85004 0.77556 0.77259 0.78619 1.19711 1.19594 1.19721 1.24307 0.96390 0.97464 0.95249 0.92402 0.89666 0.90870 0.91190 0.90058 0.92030 0.90365 0.90665 0.91447 0.90911 0.90465 0.86860 0.89486 0.88028 0.87501 0.89724 0.77106 0.91382 0.88769 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.09 9.10 127.77 1.16 3.25 16 2 N -0.58 -14.66 3.11 -821.64 -2.56 -17.21 16 3 C 0.54 14.03 7.46 87.66 0.65 14.69 16 4 O -0.58 -18.77 15.70 -3.02 -0.05 -18.82 16 5 C -0.19 -3.71 3.96 -11.55 -0.05 -3.76 16 6 H 0.14 2.26 6.39 -2.39 -0.02 2.24 16 7 C -0.10 -1.77 5.60 -11.63 -0.07 -1.83 16 8 H 0.09 2.00 7.55 -2.39 -0.02 1.99 16 9 C -0.09 -1.07 5.93 30.25 0.18 -0.89 16 10 C -0.12 -1.26 5.70 30.65 0.17 -1.09 16 11 C -0.12 -1.16 5.92 30.65 0.18 -0.98 16 12 C -0.09 -1.13 5.82 30.00 0.17 -0.96 16 13 C -0.11 -1.78 5.75 -11.44 -0.07 -1.85 16 14 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 15 C 0.12 2.97 4.67 45.44 0.21 3.18 16 16 C -0.01 -0.15 7.31 83.57 0.61 0.47 16 17 N -0.46 -14.09 4.40 -932.58 -4.10 -18.20 16 18 C 0.02 0.66 5.30 85.56 0.45 1.11 16 19 C 0.44 20.87 7.85 87.66 0.69 21.56 16 20 O -0.61 -33.59 16.01 -3.08 -0.05 -33.64 16 21 N -0.58 -29.45 5.29 -306.98 -1.62 -31.07 16 22 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 26 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 30 C 0.00 -0.12 6.72 83.57 0.56 0.44 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.61 6.64 -2.39 -0.02 1.60 16 33 H 0.07 2.19 5.68 -2.39 -0.01 2.18 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.06 0.68 7.12 -2.39 -0.02 0.66 16 37 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.67 8.04 -2.39 -0.02 0.65 16 40 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 2.84 7.28 -2.38 -0.02 2.82 16 43 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.10 1.94 7.91 -2.39 -0.02 1.93 16 45 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 46 H 0.08 2.41 7.30 -2.39 -0.02 2.40 16 47 H 0.40 19.15 7.90 -92.71 -0.73 18.41 16 48 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.09 2.30 7.42 -2.38 -0.02 2.28 16 50 H 0.07 2.31 7.25 -2.39 -0.02 2.29 16 Total: -1.00 -70.61 393.95 0.30 -70.31 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: 0.22 Total: 38.07 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.16 Total: 15.09 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -8.00 Total: -115.93 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.10 Total: -52.46 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -70.61 0.30 -70.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733303216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.018 kcal (2) G-P(sol) polarization free energy of solvation -70.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds