Wall clock time and date at job start Tue Mar 31 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99634 * 2 1 4 4 O 1.21290 * 119.99663 * 180.02562 * 3 2 1 5 5 C 1.50690 * 120.00324 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47235 * 180.02562 * 5 3 2 7 7 H 1.09005 * 115.54938 * 29.41682 * 6 5 3 8 8 C 1.52994 * 117.50200 * 243.74622 * 6 5 3 9 9 C 1.52994 * 117.50019 * 175.08503 * 6 5 3 10 10 H 1.09004 * 117.50205 * 0.02562 * 9 6 5 11 11 C 1.53005 * 117.50091 * 214.97793 * 9 6 5 12 12 C 1.53005 * 117.49767 * 128.61979 * 11 9 6 13 13 C 1.52995 * 60.00092 * 252.51280 * 12 11 9 14 14 C 1.46499 * 119.99940 * 180.02562 * 2 1 3 15 15 C 1.53516 * 114.17129 * 300.00036 * 14 2 1 16 16 N 1.47473 * 87.93262 * 87.62009 * 15 14 2 17 17 C 1.46902 * 110.99654 * 138.70265 * 16 15 14 18 18 C 1.50702 * 109.47027 * 170.00034 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46989 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46903 * 119.99798 * 25 23 21 28 28 H 1.48498 * 109.47416 * 240.00213 * 25 23 21 29 29 C 1.47474 * 87.83753 * 27.01424 * 16 15 14 30 30 H 1.09004 * 109.47578 * 269.99907 * 1 2 3 31 31 H 1.09002 * 109.47273 * 29.99898 * 1 2 3 32 32 H 1.09006 * 109.47335 * 150.00113 * 1 2 3 33 33 H 1.09001 * 109.47203 * 299.99389 * 5 3 2 34 34 H 1.08997 * 109.47626 * 60.00232 * 5 3 2 35 35 H 1.09003 * 117.49663 * 359.97438 * 8 6 5 36 36 H 1.09000 * 117.50071 * 144.99338 * 8 6 5 37 37 H 1.08992 * 115.55231 * 274.33120 * 11 9 6 38 38 H 1.08995 * 117.49703 * 0.02562 * 12 11 9 39 39 H 1.08997 * 117.49410 * 145.02169 * 12 11 9 40 40 H 1.09002 * 117.50174 * 252.50983 * 13 12 11 41 41 H 1.09005 * 117.51661 * 107.47798 * 13 12 11 42 42 H 1.08999 * 113.38351 * 166.92106 * 14 2 1 43 43 H 1.09002 * 113.47137 * 332.85507 * 15 14 2 44 44 H 1.09003 * 113.53050 * 202.40406 * 15 14 2 45 45 H 1.09004 * 109.47131 * 50.00278 * 17 16 15 46 46 H 1.08994 * 109.47471 * 290.00028 * 17 16 15 47 47 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 48 48 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.48384 * 87.75243 * 29 16 15 50 50 H 1.09002 * 113.47897 * 218.22515 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4722 0.0006 6 6 2.3796 3.6352 -0.0002 7 1 3.3358 3.4359 -0.4840 8 6 2.3833 4.5623 1.2169 9 6 1.8108 5.0508 -0.1160 10 1 0.7283 5.1537 -0.1913 11 6 2.6281 6.0785 -0.9015 12 6 1.9078 6.8639 -1.9994 13 6 2.9164 5.7760 -2.3733 14 6 2.1975 -1.2687 -0.0006 15 6 1.9053 -2.1638 1.2120 16 7 0.7723 -2.7280 0.4551 17 6 0.6878 -4.1828 0.6405 18 6 -0.6088 -4.6884 0.0622 19 8 -1.3858 -3.9131 -0.4541 20 7 -0.9023 -6.0028 0.1132 21 6 -2.0792 -6.4636 -0.4180 22 1 -2.7710 -5.7732 -0.8776 23 6 -2.3820 -7.8186 -0.3649 24 7 -1.5405 -8.6585 0.1948 25 14 -3.9859 -8.4463 -1.0880 26 1 -4.7525 -7.3077 -1.6548 27 1 -3.6935 -9.4291 -2.1622 28 1 -4.7866 -9.1011 -0.0224 29 6 1.5043 -2.3944 -0.7809 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 0.7584 2.5302 -0.8892 34 1 0.7590 2.5299 0.8908 35 1 1.6772 4.3439 2.0180 36 1 3.3420 4.9728 1.5339 37 1 3.3998 6.5984 -0.3340 38 1 0.8517 6.6488 -2.1618 39 1 2.2056 7.9009 -2.1541 40 1 3.8778 6.0972 -2.7742 41 1 2.5243 4.8446 -2.7819 42 1 3.2577 -1.1560 -0.2269 43 1 1.6012 -1.6078 2.0988 44 1 2.6934 -2.8880 1.4183 45 1 0.7265 -4.4164 1.7045 46 1 1.5239 -4.6630 0.1324 47 1 -0.2808 -6.6229 0.5258 48 1 -1.7520 -9.6044 0.2322 49 1 2.1859 -3.1799 -1.1075 50 1 0.8604 -2.0339 -1.5831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733309426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:52 Heat of formation + Delta-G solvation = 25.846410 kcal Electronic energy + Delta-G solvation = -28318.697778 eV Core-core repulsion = 24349.197923 eV Total energy + Delta-G solvation = -3969.499855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89476 -39.53173 -38.52517 -37.70687 -35.68321 -34.86003 -33.88283 -31.31054 -30.61942 -29.15029 -27.03004 -25.95343 -25.35688 -24.04955 -23.55030 -22.75185 -21.91180 -20.35883 -19.94250 -19.30401 -18.56768 -17.93267 -17.21039 -16.50659 -16.05330 -15.98551 -15.82946 -15.28288 -15.24619 -14.95434 -14.55695 -14.17353 -13.97417 -13.75326 -13.61207 -13.26338 -13.13436 -12.82943 -12.49669 -12.43501 -12.06157 -12.02491 -11.95215 -11.74310 -11.59514 -11.44134 -11.42169 -11.16900 -11.10261 -10.94522 -10.92728 -10.73421 -10.35655 -10.23181 -10.13625 -9.96996 -9.66651 -9.52040 -8.83034 -8.64486 -8.21916 -7.97061 -6.42649 -3.83474 2.52804 2.82165 3.15140 3.25682 3.27764 3.32632 3.66856 3.89342 3.98305 4.18397 4.22344 4.38859 4.44412 4.47418 4.61135 4.71578 4.83032 4.86782 4.94062 4.99303 5.14166 5.15615 5.18051 5.23869 5.31320 5.32785 5.35915 5.39262 5.48010 5.53633 5.58370 5.58764 5.64343 5.67808 5.72065 5.79463 5.81588 5.83923 5.90380 5.92349 6.12095 6.13663 6.25255 6.47822 6.55174 7.10031 7.37967 7.54242 8.05290 8.10076 8.60980 9.17545 9.53950 10.05845 10.75267 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001782 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.048942 B =15709.148997 C =16294.932263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.588 5.588 3 C 0.518 3.482 4 O -0.545 6.545 5 C -0.109 4.109 6 C -0.129 4.129 7 H 0.119 0.881 8 C -0.169 4.169 9 C -0.123 4.123 10 H 0.106 0.894 11 C -0.124 4.124 12 C -0.178 4.178 13 C -0.176 4.176 14 C 0.115 3.885 15 C -0.017 4.017 16 N -0.437 5.437 17 C 0.007 3.993 18 C 0.448 3.552 19 O -0.577 6.577 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.006 4.006 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.079 0.921 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 23.967 0.445 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.320 5.320 3 C 0.306 3.694 4 O -0.422 6.422 5 C -0.148 4.148 6 C -0.148 4.148 7 H 0.137 0.863 8 C -0.206 4.206 9 C -0.141 4.141 10 H 0.124 0.876 11 C -0.142 4.142 12 C -0.215 4.215 13 C -0.213 4.213 14 C 0.010 3.990 15 C -0.148 4.148 16 N -0.159 5.159 17 C -0.125 4.125 18 C 0.233 3.767 19 O -0.460 6.460 20 N -0.204 5.204 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.136 4.136 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.823 24.490 0.233 26.031 hybrid contribution 0.229 -1.473 -0.031 1.491 sum 9.052 23.017 0.202 24.734 Atomic orbital electron populations 1.21940 0.77969 1.03976 1.02683 1.47446 1.07593 1.04502 1.72473 1.20583 0.87962 0.85201 0.75604 1.90667 1.14060 1.87385 1.50109 1.21254 0.98120 0.91071 1.04371 1.22176 1.00892 0.88873 1.02828 0.86277 1.23163 1.02655 1.03526 0.91221 1.21898 0.98538 0.94242 0.99418 0.87628 1.21740 1.01665 1.00375 0.90461 1.22978 0.98248 0.96871 1.03376 1.22969 1.00453 1.00415 0.97488 1.22031 0.97000 0.83123 0.96852 1.24333 0.94105 0.97679 0.98640 1.68855 1.32017 1.11376 1.03701 1.22514 0.98095 0.89909 1.01969 1.19652 0.88404 0.83135 0.85548 1.90503 1.51096 1.55608 1.48819 1.41887 1.20043 1.05960 1.52532 1.19737 0.96593 0.92213 1.34182 0.87908 1.25254 0.99359 0.95814 0.97582 1.69618 1.36417 1.03849 1.44520 0.85809 0.81283 0.78801 0.78499 1.19245 1.20791 1.20761 1.24290 0.96611 0.96627 0.96055 0.92380 0.91939 0.88146 0.88454 0.88693 0.88737 0.88722 0.87786 0.88749 0.88941 0.88931 0.88545 0.87016 0.89580 0.90494 0.89419 0.92158 0.77570 0.91955 0.90264 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.33 59.85 0.56 1.42 16 2 N -0.59 -7.07 3.11 -173.62 -0.54 -7.61 16 3 C 0.52 6.29 7.67 -10.99 -0.08 6.20 16 4 O -0.54 -8.32 15.08 5.55 0.08 -8.23 16 5 C -0.11 -0.95 4.53 -27.88 -0.13 -1.08 16 6 C -0.13 -1.16 5.05 -90.62 -0.46 -1.62 16 7 H 0.12 1.32 7.31 -51.93 -0.38 0.94 16 8 C -0.17 -1.32 9.90 -26.70 -0.26 -1.58 16 9 C -0.12 -0.91 5.59 -90.59 -0.51 -1.42 16 10 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.12 -0.90 5.87 -90.61 -0.53 -1.43 16 12 C -0.18 -1.14 10.25 -26.73 -0.27 -1.41 16 13 C -0.18 -1.26 10.18 -26.73 -0.27 -1.53 16 14 C 0.12 1.44 4.66 -67.71 -0.32 1.12 16 15 C -0.02 -0.21 7.31 -7.56 -0.06 -0.27 16 16 N -0.44 -6.79 4.40 -246.13 -1.08 -7.87 16 17 C 0.01 0.12 5.30 -4.97 -0.03 0.10 16 18 C 0.45 10.37 7.85 -10.98 -0.09 10.28 16 19 O -0.58 -15.30 16.01 5.55 0.09 -15.21 16 20 N -0.57 -14.22 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 25 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 29 C -0.01 -0.08 6.72 -7.56 -0.05 -0.13 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 32 H 0.10 1.42 5.68 -51.93 -0.29 1.12 16 33 H 0.10 0.72 7.40 -51.93 -0.38 0.34 16 34 H 0.09 0.71 7.84 -51.93 -0.41 0.30 16 35 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.40 7.29 -51.93 -0.38 1.02 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 45 H 0.09 1.37 8.08 -51.93 -0.42 0.96 16 46 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 50 H 0.09 1.37 7.25 -51.93 -0.38 1.00 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -32.38 407.82 -10.60 -42.98 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.21 Total: 11.14 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.73 Total: 0.73 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.96 Total: -53.47 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.38 -10.60 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733309426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.829 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds