Wall clock time and date at job start Tue Mar 31 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99634 * 2 1 4 4 O 1.21290 * 119.99663 * 180.02562 * 3 2 1 5 5 C 1.50690 * 120.00324 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47235 * 180.02562 * 5 3 2 7 7 H 1.09005 * 115.54938 * 29.41682 * 6 5 3 8 8 C 1.52994 * 117.50200 * 243.74622 * 6 5 3 9 9 C 1.52994 * 117.50019 * 175.08503 * 6 5 3 10 10 H 1.09004 * 117.50205 * 0.02562 * 9 6 5 11 11 C 1.53005 * 117.50091 * 214.97793 * 9 6 5 12 12 C 1.53005 * 117.49767 * 128.61979 * 11 9 6 13 13 C 1.52995 * 60.00092 * 252.51280 * 12 11 9 14 14 C 1.46499 * 119.99940 * 180.02562 * 2 1 3 15 15 C 1.53516 * 114.17129 * 300.00036 * 14 2 1 16 16 N 1.47473 * 87.93262 * 87.62009 * 15 14 2 17 17 C 1.46902 * 110.99654 * 138.70265 * 16 15 14 18 18 C 1.50702 * 109.47027 * 170.00034 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46989 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46903 * 119.99798 * 25 23 21 28 28 H 1.48498 * 109.47416 * 240.00213 * 25 23 21 29 29 C 1.47474 * 87.83753 * 27.01424 * 16 15 14 30 30 H 1.09004 * 109.47578 * 269.99907 * 1 2 3 31 31 H 1.09002 * 109.47273 * 29.99898 * 1 2 3 32 32 H 1.09006 * 109.47335 * 150.00113 * 1 2 3 33 33 H 1.09001 * 109.47203 * 299.99389 * 5 3 2 34 34 H 1.08997 * 109.47626 * 60.00232 * 5 3 2 35 35 H 1.09003 * 117.49663 * 359.97438 * 8 6 5 36 36 H 1.09000 * 117.50071 * 144.99338 * 8 6 5 37 37 H 1.08992 * 115.55231 * 274.33120 * 11 9 6 38 38 H 1.08995 * 117.49703 * 0.02562 * 12 11 9 39 39 H 1.08997 * 117.49410 * 145.02169 * 12 11 9 40 40 H 1.09002 * 117.50174 * 252.50983 * 13 12 11 41 41 H 1.09005 * 117.51661 * 107.47798 * 13 12 11 42 42 H 1.08999 * 113.38351 * 166.92106 * 14 2 1 43 43 H 1.09002 * 113.47137 * 332.85507 * 15 14 2 44 44 H 1.09003 * 113.53050 * 202.40406 * 15 14 2 45 45 H 1.09004 * 109.47131 * 50.00278 * 17 16 15 46 46 H 1.08994 * 109.47471 * 290.00028 * 17 16 15 47 47 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 48 48 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.48384 * 87.75243 * 29 16 15 50 50 H 1.09002 * 113.47897 * 218.22515 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4722 0.0006 6 6 2.3796 3.6352 -0.0002 7 1 3.3358 3.4359 -0.4840 8 6 2.3833 4.5623 1.2169 9 6 1.8108 5.0508 -0.1160 10 1 0.7283 5.1537 -0.1913 11 6 2.6281 6.0785 -0.9015 12 6 1.9078 6.8639 -1.9994 13 6 2.9164 5.7760 -2.3733 14 6 2.1975 -1.2687 -0.0006 15 6 1.9053 -2.1638 1.2120 16 7 0.7723 -2.7280 0.4551 17 6 0.6878 -4.1828 0.6405 18 6 -0.6088 -4.6884 0.0622 19 8 -1.3858 -3.9131 -0.4541 20 7 -0.9023 -6.0028 0.1132 21 6 -2.0792 -6.4636 -0.4180 22 1 -2.7710 -5.7732 -0.8776 23 6 -2.3820 -7.8186 -0.3649 24 7 -1.5405 -8.6585 0.1948 25 14 -3.9859 -8.4463 -1.0880 26 1 -4.7525 -7.3077 -1.6548 27 1 -3.6935 -9.4291 -2.1622 28 1 -4.7866 -9.1011 -0.0224 29 6 1.5043 -2.3944 -0.7809 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 0.7584 2.5302 -0.8892 34 1 0.7590 2.5299 0.8908 35 1 1.6772 4.3439 2.0180 36 1 3.3420 4.9728 1.5339 37 1 3.3998 6.5984 -0.3340 38 1 0.8517 6.6488 -2.1618 39 1 2.2056 7.9009 -2.1541 40 1 3.8778 6.0972 -2.7742 41 1 2.5243 4.8446 -2.7819 42 1 3.2577 -1.1560 -0.2269 43 1 1.6012 -1.6078 2.0988 44 1 2.6934 -2.8880 1.4183 45 1 0.7265 -4.4164 1.7045 46 1 1.5239 -4.6630 0.1324 47 1 -0.2808 -6.6229 0.5258 48 1 -1.7520 -9.6044 0.2322 49 1 2.1859 -3.1799 -1.1075 50 1 0.8604 -2.0339 -1.5831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733309426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:51 Heat of formation + Delta-G solvation = 5.502927 kcal Electronic energy + Delta-G solvation = -28319.579938 eV Core-core repulsion = 24349.197923 eV Total energy + Delta-G solvation = -3970.382015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96231 -40.51981 -39.64371 -39.09186 -36.29142 -36.03659 -35.75538 -33.27450 -31.79325 -30.10697 -28.09324 -27.24793 -26.79717 -25.13257 -24.50354 -23.29406 -22.72229 -21.12053 -21.08343 -20.62037 -19.90888 -19.54189 -18.21342 -17.79049 -17.34669 -16.98485 -16.66821 -16.52610 -16.26828 -16.24229 -15.98161 -15.51165 -15.05675 -14.90394 -14.73343 -14.46689 -14.23741 -13.87146 -13.64861 -13.48131 -13.39247 -13.16490 -13.02019 -12.93561 -12.59080 -12.50252 -12.40702 -12.31132 -12.16881 -12.10400 -12.03077 -11.88925 -11.74319 -11.50296 -11.48876 -10.91163 -10.71791 -10.37693 -10.30004 -9.99276 -9.74425 -9.62565 -8.45831 -5.94180 1.36654 1.41757 1.55654 1.59290 1.91712 2.08046 2.28900 2.67509 2.81863 3.10022 3.20638 3.37650 3.43631 3.57065 3.68179 3.77866 3.84966 4.02518 4.15559 4.15675 4.24124 4.27023 4.32678 4.35055 4.40433 4.44110 4.53248 4.57457 4.58649 4.60506 4.67635 4.71188 4.78047 4.82545 4.83021 4.86737 4.95814 5.05936 5.17500 5.27033 5.29582 5.30667 5.32137 5.42005 5.44590 5.57159 5.85830 6.07006 6.44096 6.62023 7.14649 7.15663 7.58789 8.14767 8.71863 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001782 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.048942 B =15709.148997 C =16294.932263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.590 5.590 3 C 0.515 3.485 4 O -0.580 6.580 5 C -0.101 4.101 6 C -0.142 4.142 7 H 0.093 0.907 8 C -0.168 4.168 9 C -0.110 4.110 10 H 0.118 0.882 11 C -0.134 4.134 12 C -0.169 4.169 13 C -0.186 4.186 14 C 0.120 3.880 15 C -0.007 4.007 16 N -0.460 5.460 17 C 0.020 3.980 18 C 0.445 3.555 19 O -0.615 6.615 20 N -0.578 5.578 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.006 4.006 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.092 0.908 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 24.782 0.941 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.321 5.321 3 C 0.306 3.694 4 O -0.460 6.460 5 C -0.140 4.140 6 C -0.161 4.161 7 H 0.111 0.889 8 C -0.205 4.205 9 C -0.128 4.128 10 H 0.136 0.864 11 C -0.152 4.152 12 C -0.206 4.206 13 C -0.223 4.223 14 C 0.014 3.986 15 C -0.136 4.136 16 N -0.183 5.183 17 C -0.112 4.112 18 C 0.232 3.768 19 O -0.500 6.500 20 N -0.216 5.216 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.135 4.135 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.674 25.303 0.743 26.759 hybrid contribution 0.326 -1.670 -0.199 1.713 sum 9.000 23.633 0.544 25.294 Atomic orbital electron populations 1.21891 0.77426 1.03901 1.02724 1.47553 1.07887 1.04490 1.72156 1.21170 0.87696 0.86053 0.74520 1.90652 1.15710 1.87884 1.51783 1.21282 0.97921 0.88841 1.05967 1.22038 1.00176 0.89851 1.03992 0.88860 1.23243 1.02962 1.02863 0.91457 1.21941 0.99097 0.92924 0.98856 0.86418 1.21814 1.02111 1.00752 0.90545 1.23054 0.98310 0.97106 1.02089 1.22989 1.01055 1.00627 0.97612 1.21960 0.96903 0.83160 0.96531 1.24350 0.93412 0.97649 0.98221 1.68836 1.34087 1.10158 1.05183 1.22397 0.94937 0.91119 1.02720 1.20737 0.89883 0.82141 0.84023 1.90474 1.52987 1.56387 1.50176 1.41963 1.19643 1.06897 1.53060 1.19682 0.97762 0.92638 1.35913 0.90356 1.26013 1.02384 0.95463 0.97503 1.69676 1.37659 1.04249 1.44721 0.84887 0.77440 0.78010 0.78100 1.19778 1.19710 1.19689 1.24312 0.96396 0.97576 0.95257 0.92215 0.89121 0.91096 0.86817 0.86799 0.87612 0.88942 0.87678 0.88208 0.87954 0.88643 0.89287 0.86915 0.89407 0.88260 0.87534 0.89816 0.77122 0.91404 0.88993 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.78 9.33 127.77 1.19 2.97 16 2 N -0.59 -13.60 3.11 -821.58 -2.56 -16.16 16 3 C 0.52 12.04 7.67 87.65 0.67 12.71 16 4 O -0.58 -17.65 15.08 -3.06 -0.05 -17.70 16 5 C -0.10 -1.59 4.53 29.85 0.14 -1.45 16 6 C -0.14 -2.42 5.05 -10.80 -0.05 -2.47 16 7 H 0.09 2.11 7.31 -2.38 -0.02 2.09 16 8 C -0.17 -2.39 9.90 30.61 0.30 -2.09 16 9 C -0.11 -1.46 5.59 -10.77 -0.06 -1.52 16 10 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 11 C -0.13 -1.78 5.87 -10.79 -0.06 -1.84 16 12 C -0.17 -1.89 10.25 30.59 0.31 -1.58 16 13 C -0.19 -2.53 10.18 30.59 0.31 -2.22 16 14 C 0.12 2.87 4.66 45.45 0.21 3.08 16 15 C -0.01 -0.15 7.31 83.57 0.61 0.46 16 16 N -0.46 -13.82 4.40 -932.61 -4.10 -17.92 16 17 C 0.02 0.66 5.30 85.56 0.45 1.11 16 18 C 0.44 20.76 7.85 87.66 0.69 21.45 16 19 O -0.61 -33.38 16.01 -3.07 -0.05 -33.43 16 20 N -0.58 -29.33 5.29 -306.98 -1.62 -30.95 16 21 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 24 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 25 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C -0.01 -0.15 6.72 83.57 0.56 0.41 16 30 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.09 1.39 6.44 -2.39 -0.02 1.38 16 32 H 0.07 2.01 5.68 -2.38 -0.01 2.00 16 33 H 0.11 1.42 7.40 -2.39 -0.02 1.40 16 34 H 0.11 1.39 7.84 -2.39 -0.02 1.37 16 35 H 0.11 1.26 8.03 -2.39 -0.02 1.24 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.11 2.72 7.29 -2.39 -0.02 2.71 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.10 1.86 7.91 -2.39 -0.02 1.84 16 45 H 0.11 3.12 8.08 -2.38 -0.02 3.10 16 46 H 0.08 2.37 7.30 -2.39 -0.02 2.36 16 47 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 48 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 49 H 0.09 2.22 7.42 -2.39 -0.02 2.20 16 50 H 0.07 2.26 7.25 -2.39 -0.02 2.24 16 Total: -1.00 -71.02 407.82 0.70 -70.32 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.21 Total: 39.42 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.56 Total: 10.89 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -8.00 Total: -114.31 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -71.02 0.70 -70.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733309426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.819 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds