Wall clock time and date at job start Tue Mar 31 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99739 * 2 1 4 4 O 1.21282 * 120.00212 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99921 * 359.97438 * 3 2 1 6 6 H 1.09000 * 115.55636 * 22.68302 * 5 3 2 7 7 C 1.53088 * 117.50959 * 168.40057 * 5 3 2 8 8 C 1.52559 * 117.51017 * 236.89787 * 5 3 2 9 9 C 1.53872 * 120.82309 * 142.33498 * 8 5 3 10 10 C 1.54989 * 104.06039 * 192.35257 * 9 8 5 11 11 C 1.54928 * 102.82038 * 37.57402 * 10 9 8 12 12 C 1.53487 * 121.09097 * 2.96455 * 8 5 3 13 13 C 1.46495 * 120.00479 * 179.97438 * 2 1 3 14 14 C 1.53946 * 113.73404 * 41.86246 * 13 2 1 15 15 N 1.48187 * 86.10034 * 221.95996 * 14 13 2 16 16 C 1.46898 * 111.07023 * 137.52170 * 15 14 13 17 17 C 1.50702 * 109.47410 * 70.56393 * 16 15 14 18 18 O 1.21288 * 119.99720 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99288 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00559 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00030 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99560 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00252 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46949 * 90.00086 * 24 22 20 26 26 H 1.48495 * 109.47076 * 209.99582 * 24 22 20 27 27 H 1.48495 * 109.47449 * 329.99938 * 24 22 20 28 28 C 1.47954 * 90.80349 * 24.59461 * 15 14 13 29 29 H 1.08998 * 109.47397 * 275.22433 * 1 2 3 30 30 H 1.09005 * 109.46809 * 155.22994 * 1 2 3 31 31 H 1.08993 * 109.47437 * 35.23064 * 1 2 3 32 32 H 1.08997 * 117.51261 * 214.91555 * 7 5 3 33 33 H 1.09006 * 117.51285 * 359.96446 * 7 5 3 34 34 H 1.08996 * 110.51769 * 310.99921 * 9 8 5 35 35 H 1.09001 * 110.50608 * 73.71088 * 9 8 5 36 36 H 1.09000 * 110.74337 * 279.23969 * 10 9 8 37 37 H 1.08995 * 110.74123 * 155.90522 * 10 9 8 38 38 H 1.09001 * 110.47713 * 203.59776 * 11 10 9 39 39 H 1.08998 * 110.59445 * 81.01918 * 11 10 9 40 40 H 1.08992 * 110.06999 * 263.31811 * 12 8 5 41 41 H 1.08998 * 110.06545 * 24.79338 * 12 8 5 42 42 H 1.09000 * 112.94174 * 173.42348 * 13 2 1 43 43 H 1.08998 * 113.75174 * 336.23898 * 14 13 2 44 44 H 1.08992 * 113.76025 * 107.60075 * 14 13 2 45 45 H 1.09008 * 109.46581 * 190.56220 * 16 15 14 46 46 H 1.08998 * 109.46850 * 310.55831 * 16 15 14 47 47 H 0.96995 * 120.00866 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99999 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.76611 * 221.08534 * 28 15 14 50 50 H 1.09004 * 113.75704 * 89.71762 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 -0.0006 6 1 0.3642 2.4259 0.3782 7 6 2.1834 3.7498 0.2724 8 6 1.6732 3.4518 -1.1342 9 6 0.5439 4.2913 -1.7568 10 6 1.1790 4.8838 -3.0404 11 6 2.0665 3.7219 -3.5528 12 6 2.6427 3.0895 -2.2676 13 6 2.1976 -1.2686 0.0006 14 6 1.5985 -2.3305 -0.9394 15 7 1.8551 -3.2971 0.1541 16 6 0.7224 -4.2172 0.3222 17 6 0.6632 -5.1609 -0.8512 18 8 1.4842 -5.0757 -1.7399 19 7 -0.3020 -6.0995 -0.9131 20 6 -0.3554 -6.9584 -1.9804 21 1 0.3755 -6.8826 -2.7717 22 6 -1.3502 -7.9265 -2.0440 23 7 -2.2394 -8.0190 -1.0808 24 14 -1.4236 -9.0962 -3.4985 25 1 -0.6122 -10.3045 -3.2033 26 1 -2.8331 -9.4941 -3.7431 27 1 -0.8835 -8.4200 -4.7053 28 6 1.8076 -2.2089 1.1553 29 1 -0.3634 0.0936 1.0234 30 1 -0.3633 -0.9332 -0.4306 31 1 -0.3634 0.8394 -0.5928 32 1 1.6872 4.5440 0.8303 33 1 3.2533 3.6462 0.4531 34 1 -0.3075 3.6592 -2.0088 35 1 0.2414 5.0882 -1.0774 36 1 1.7860 5.7575 -2.8029 37 1 0.4103 5.1337 -3.7715 38 1 2.8696 4.1046 -4.1826 39 1 1.4673 2.9944 -4.1003 40 1 3.6310 3.4992 -2.0597 41 1 2.7023 2.0067 -2.3769 42 1 3.2736 -1.1379 -0.1145 43 1 0.5404 -2.1804 -1.1536 44 1 2.1935 -2.5102 -1.8347 45 1 0.8517 -4.7883 1.2416 46 1 -0.2044 -3.6462 0.3765 47 1 -0.9583 -6.1679 -0.2022 48 1 -2.9341 -8.6945 -1.1253 49 1 2.5693 -2.2917 1.9306 50 1 0.8106 -2.0232 1.5551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733315896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:55 Heat of formation + Delta-G solvation = -8.763513 kcal Electronic energy + Delta-G solvation = -29133.563321 eV Core-core repulsion = 25162.562667 eV Total energy + Delta-G solvation = -3971.000654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96759 -39.90368 -38.30992 -37.56967 -35.04807 -34.39026 -33.89485 -31.31411 -30.06748 -29.06583 -27.20844 -26.42306 -26.00026 -25.54543 -24.51382 -22.87790 -21.15383 -20.19013 -19.29802 -19.19326 -18.58331 -17.94117 -17.44095 -16.51445 -16.20268 -16.06477 -15.65871 -15.41360 -15.09477 -14.61992 -14.54349 -13.97223 -13.90809 -13.69070 -13.52909 -13.24881 -13.09117 -12.95688 -12.73930 -12.64733 -12.35477 -12.15289 -12.04698 -11.76495 -11.53010 -11.46795 -11.35735 -11.27785 -11.10923 -11.01005 -10.88948 -10.62644 -10.52396 -10.41056 -10.23576 -10.13857 -9.80237 -9.52619 -8.76292 -8.69962 -8.27117 -7.98732 -6.43984 -3.84783 2.25496 2.72622 3.16324 3.25112 3.30909 3.54286 3.86369 3.95800 4.06473 4.20335 4.26500 4.40995 4.48329 4.53068 4.58534 4.81364 4.81889 4.87406 4.90322 4.96838 5.14825 5.18604 5.23002 5.27176 5.29921 5.37766 5.38845 5.42357 5.48008 5.54994 5.55936 5.64505 5.64891 5.72985 5.74451 5.78682 5.80976 5.84902 5.95930 6.00983 6.05800 6.18011 6.23631 6.38930 6.56716 7.11928 7.24602 7.53195 8.03258 8.04078 8.58888 9.15756 9.51449 10.03163 10.73784 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.002183 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.757064 B =12822.374697 C =13552.132929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.547 3.453 4 O -0.537 6.537 5 C -0.186 4.186 6 H 0.122 0.878 7 C -0.135 4.135 8 C -0.094 4.094 9 C -0.090 4.090 10 C -0.122 4.122 11 C -0.124 4.124 12 C -0.089 4.089 13 C 0.113 3.887 14 C 0.011 3.989 15 N -0.448 5.448 16 C 0.014 3.986 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.012 4.012 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 25.592 3.716 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C 0.336 3.664 4 O -0.414 6.414 5 C -0.207 4.207 6 H 0.139 0.861 7 C -0.172 4.172 8 C -0.095 4.095 9 C -0.127 4.127 10 C -0.159 4.159 11 C -0.162 4.162 12 C -0.126 4.126 13 C 0.010 3.990 14 C -0.118 4.118 15 N -0.171 5.171 16 C -0.119 4.119 17 C 0.228 3.772 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.142 4.142 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.861 25.037 3.094 25.389 hybrid contribution -1.648 -0.571 0.063 1.745 sum 1.213 24.466 3.156 24.699 Atomic orbital electron populations 1.21876 0.79601 1.03855 1.01914 1.47800 1.06915 1.05657 1.73168 1.19633 0.87309 0.84234 0.75240 1.90685 1.13791 1.87203 1.49712 1.22401 1.01214 0.89790 1.07278 0.86051 1.23067 1.01014 0.95732 0.97369 1.21786 0.99135 0.98693 0.89875 1.21948 0.96093 0.97995 0.96712 1.22467 0.98896 0.97955 0.96588 1.22374 0.99234 0.97557 0.97035 1.21643 0.97670 1.01059 0.92237 1.23246 0.98938 0.80638 0.96217 1.24330 1.00619 0.89476 0.97403 1.68390 1.37432 1.08484 1.02816 1.22445 0.92837 0.96620 0.99955 1.19668 0.84488 0.84540 0.88501 1.90530 1.41421 1.73509 1.40670 1.41867 1.26742 1.29115 1.22394 1.19697 1.12861 1.09699 1.00538 0.87933 1.25264 0.95663 0.98438 0.98591 1.69611 1.16411 1.35542 1.32799 0.85856 0.77293 0.80108 0.81036 1.20359 1.20928 1.19424 1.24485 1.01614 0.91329 0.96805 0.92371 0.90270 0.90777 0.87981 0.87419 0.90911 0.91298 0.91320 0.91376 0.91482 0.91470 0.91060 0.91400 0.85360 0.91006 0.88161 0.88976 0.92952 0.77512 0.91871 0.88848 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.90 59.85 0.53 1.14 16 2 N -0.60 -6.94 3.09 -175.27 -0.54 -7.48 16 3 C 0.55 6.73 6.39 -10.98 -0.07 6.66 16 4 O -0.54 -8.38 15.21 5.56 0.08 -8.30 16 5 C -0.19 -1.68 5.01 -91.95 -0.46 -2.14 16 6 H 0.12 0.86 6.81 -51.93 -0.35 0.50 16 7 C -0.13 -1.11 9.74 -26.91 -0.26 -1.38 16 8 C -0.09 -0.79 2.44 -154.25 -0.38 -1.17 16 9 C -0.09 -0.59 6.58 -25.23 -0.17 -0.75 16 10 C -0.12 -0.77 6.91 -24.66 -0.17 -0.94 16 11 C -0.12 -0.96 6.84 -24.99 -0.17 -1.13 16 12 C -0.09 -0.85 5.89 -25.75 -0.15 -1.00 16 13 C 0.11 1.53 4.41 -69.62 -0.31 1.22 16 14 C 0.01 0.17 6.26 -2.63 -0.02 0.16 16 15 N -0.45 -7.56 5.94 -239.66 -1.42 -8.99 16 16 C 0.01 0.24 5.31 -4.98 -0.03 0.21 16 17 C 0.44 10.45 7.59 -10.99 -0.08 10.37 16 18 O -0.58 -15.71 15.13 5.55 0.08 -15.62 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 C -0.01 -0.16 7.57 -2.76 -0.02 -0.18 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.73 5.72 -51.93 -0.30 0.44 16 31 H 0.07 0.52 6.74 -51.93 -0.35 0.17 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 1.06 7.72 -51.93 -0.40 0.65 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.38 8.11 -51.93 -0.42 -0.05 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.80 7.11 -51.93 -0.37 0.43 16 42 H 0.13 1.94 7.19 -51.93 -0.37 1.57 16 43 H 0.07 1.07 5.58 -51.93 -0.29 0.78 16 44 H 0.10 1.80 8.10 -51.93 -0.42 1.38 16 45 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 46 H 0.05 0.80 7.70 -51.93 -0.40 0.41 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.07 0.80 7.18 -51.93 -0.37 0.42 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -32.90 396.35 -10.28 -43.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.11 Total: 10.11 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.99 Total: 3.10 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -1.30 Total: -54.44 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.90 -10.28 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733315896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.422 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds