Wall clock time and date at job start Tue Mar 31 2020 18:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99739 * 2 1 4 4 O 1.21282 * 120.00212 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99921 * 359.97438 * 3 2 1 6 6 H 1.09000 * 115.55636 * 22.68302 * 5 3 2 7 7 C 1.53088 * 117.50959 * 168.40057 * 5 3 2 8 8 C 1.52559 * 117.51017 * 236.89787 * 5 3 2 9 9 C 1.53872 * 120.82309 * 142.33498 * 8 5 3 10 10 C 1.54989 * 104.06039 * 192.35257 * 9 8 5 11 11 C 1.54928 * 102.82038 * 37.57402 * 10 9 8 12 12 C 1.53487 * 121.09097 * 2.96455 * 8 5 3 13 13 C 1.46495 * 120.00479 * 179.97438 * 2 1 3 14 14 C 1.53946 * 113.73404 * 41.86246 * 13 2 1 15 15 N 1.48187 * 86.10034 * 221.95996 * 14 13 2 16 16 C 1.46898 * 111.07023 * 137.52170 * 15 14 13 17 17 C 1.50702 * 109.47410 * 70.56393 * 16 15 14 18 18 O 1.21288 * 119.99720 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99288 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00559 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00030 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99560 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00252 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46949 * 90.00086 * 24 22 20 26 26 H 1.48495 * 109.47076 * 209.99582 * 24 22 20 27 27 H 1.48495 * 109.47449 * 329.99938 * 24 22 20 28 28 C 1.47954 * 90.80349 * 24.59461 * 15 14 13 29 29 H 1.08998 * 109.47397 * 275.22433 * 1 2 3 30 30 H 1.09005 * 109.46809 * 155.22994 * 1 2 3 31 31 H 1.08993 * 109.47437 * 35.23064 * 1 2 3 32 32 H 1.08997 * 117.51261 * 214.91555 * 7 5 3 33 33 H 1.09006 * 117.51285 * 359.96446 * 7 5 3 34 34 H 1.08996 * 110.51769 * 310.99921 * 9 8 5 35 35 H 1.09001 * 110.50608 * 73.71088 * 9 8 5 36 36 H 1.09000 * 110.74337 * 279.23969 * 10 9 8 37 37 H 1.08995 * 110.74123 * 155.90522 * 10 9 8 38 38 H 1.09001 * 110.47713 * 203.59776 * 11 10 9 39 39 H 1.08998 * 110.59445 * 81.01918 * 11 10 9 40 40 H 1.08992 * 110.06999 * 263.31811 * 12 8 5 41 41 H 1.08998 * 110.06545 * 24.79338 * 12 8 5 42 42 H 1.09000 * 112.94174 * 173.42348 * 13 2 1 43 43 H 1.08998 * 113.75174 * 336.23898 * 14 13 2 44 44 H 1.08992 * 113.76025 * 107.60075 * 14 13 2 45 45 H 1.09008 * 109.46581 * 190.56220 * 16 15 14 46 46 H 1.08998 * 109.46850 * 310.55831 * 16 15 14 47 47 H 0.96995 * 120.00866 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99999 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.76611 * 221.08534 * 28 15 14 50 50 H 1.09004 * 113.75704 * 89.71762 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 -0.0006 6 1 0.3642 2.4259 0.3782 7 6 2.1834 3.7498 0.2724 8 6 1.6732 3.4518 -1.1342 9 6 0.5439 4.2913 -1.7568 10 6 1.1790 4.8838 -3.0404 11 6 2.0665 3.7219 -3.5528 12 6 2.6427 3.0895 -2.2676 13 6 2.1976 -1.2686 0.0006 14 6 1.5985 -2.3305 -0.9394 15 7 1.8551 -3.2971 0.1541 16 6 0.7224 -4.2172 0.3222 17 6 0.6632 -5.1609 -0.8512 18 8 1.4842 -5.0757 -1.7399 19 7 -0.3020 -6.0995 -0.9131 20 6 -0.3554 -6.9584 -1.9804 21 1 0.3755 -6.8826 -2.7717 22 6 -1.3502 -7.9265 -2.0440 23 7 -2.2394 -8.0190 -1.0808 24 14 -1.4236 -9.0962 -3.4985 25 1 -0.6122 -10.3045 -3.2033 26 1 -2.8331 -9.4941 -3.7431 27 1 -0.8835 -8.4200 -4.7053 28 6 1.8076 -2.2089 1.1553 29 1 -0.3634 0.0936 1.0234 30 1 -0.3633 -0.9332 -0.4306 31 1 -0.3634 0.8394 -0.5928 32 1 1.6872 4.5440 0.8303 33 1 3.2533 3.6462 0.4531 34 1 -0.3075 3.6592 -2.0088 35 1 0.2414 5.0882 -1.0774 36 1 1.7860 5.7575 -2.8029 37 1 0.4103 5.1337 -3.7715 38 1 2.8696 4.1046 -4.1826 39 1 1.4673 2.9944 -4.1003 40 1 3.6310 3.4992 -2.0597 41 1 2.7023 2.0067 -2.3769 42 1 3.2736 -1.1379 -0.1145 43 1 0.5404 -2.1804 -1.1536 44 1 2.1935 -2.5102 -1.8347 45 1 0.8517 -4.7883 1.2416 46 1 -0.2044 -3.6462 0.3765 47 1 -0.9583 -6.1679 -0.2022 48 1 -2.9341 -8.6945 -1.1253 49 1 2.5693 -2.2917 1.9306 50 1 0.8106 -2.0232 1.5551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733315896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:54 Heat of formation + Delta-G solvation = -31.852652 kcal Electronic energy + Delta-G solvation = -29134.564541 eV Core-core repulsion = 25162.562667 eV Total energy + Delta-G solvation = -3972.001874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98241 -40.95954 -39.71672 -38.83126 -36.17155 -35.83026 -35.04019 -33.32436 -31.44889 -29.67650 -28.10269 -27.63193 -27.10577 -26.67482 -25.78233 -24.06206 -21.78215 -21.24358 -20.88048 -20.17113 -19.91975 -19.38863 -18.42951 -17.86121 -17.53094 -16.97805 -16.59080 -16.57095 -16.35180 -15.96142 -15.85252 -15.61369 -15.22170 -14.89612 -14.45584 -14.23108 -14.01337 -13.92224 -13.71471 -13.54895 -13.51995 -13.30200 -13.24930 -13.18037 -12.91109 -12.86497 -12.44228 -12.21125 -12.14197 -12.04516 -11.99780 -11.86288 -11.82370 -11.52159 -11.45337 -11.23513 -10.95075 -10.61662 -10.36958 -10.03572 -9.79496 -9.69851 -8.48441 -5.96995 1.36243 1.36342 1.40579 1.52884 1.81022 2.02481 2.27716 2.79019 2.83763 3.17851 3.21436 3.33236 3.47794 3.61593 3.67394 3.78260 3.85075 3.90979 4.01776 4.18021 4.22962 4.24225 4.29430 4.30004 4.42016 4.50675 4.53604 4.60032 4.63291 4.70274 4.74793 4.76988 4.84342 4.90160 4.92220 4.95965 5.00433 5.04915 5.11365 5.21175 5.25186 5.28034 5.35941 5.39294 5.42647 5.47133 5.82962 6.02889 6.33270 6.58375 7.10688 7.11165 7.53723 8.09902 8.68890 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.002183 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.757064 B =12822.374697 C =13552.132929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.602 5.602 3 C 0.539 3.461 4 O -0.581 6.581 5 C -0.187 4.187 6 H 0.152 0.848 7 C -0.130 4.130 8 C -0.095 4.095 9 C -0.084 4.084 10 C -0.118 4.118 11 C -0.124 4.124 12 C -0.092 4.092 13 C 0.124 3.876 14 C 0.011 3.989 15 N -0.479 5.479 16 C 0.027 3.973 17 C 0.439 3.561 18 O -0.620 6.620 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.274 1.274 28 C 0.005 3.995 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.102 0.898 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 27.237 4.921 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.333 5.333 3 C 0.330 3.670 4 O -0.462 6.462 5 C -0.208 4.208 6 H 0.169 0.831 7 C -0.167 4.167 8 C -0.095 4.095 9 C -0.121 4.121 10 C -0.155 4.155 11 C -0.162 4.162 12 C -0.130 4.130 13 C 0.019 3.981 14 C -0.118 4.118 15 N -0.202 5.202 16 C -0.105 4.105 17 C 0.226 3.774 18 O -0.507 6.507 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.199 1.199 28 C -0.124 4.124 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.102 0.898 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.120 0.880 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.301 26.690 4.330 27.040 hybrid contribution -0.781 -1.076 -0.332 1.371 sum -0.480 25.614 3.998 25.928 Atomic orbital electron populations 1.22133 0.77318 1.04390 1.03895 1.47861 1.08225 1.04615 1.72583 1.20290 0.87048 0.85442 0.74242 1.90664 1.15904 1.87869 1.51727 1.22466 1.02169 0.87993 1.08125 0.83082 1.23125 1.00027 0.96036 0.97550 1.21873 0.99528 0.98683 0.89447 1.21975 0.95228 0.98180 0.96744 1.22477 0.98898 0.97243 0.96907 1.22375 0.99606 0.98152 0.96068 1.21622 0.97946 0.99085 0.94319 1.22835 0.97794 0.81567 0.95886 1.24243 1.00734 0.90425 0.96426 1.68356 1.37545 1.09856 1.04483 1.22345 0.94730 0.96019 0.97378 1.20737 0.82884 0.84308 0.89425 1.90506 1.42765 1.74556 1.42827 1.41917 1.27496 1.29451 1.22089 1.19621 1.13506 1.11756 1.01373 0.90593 1.26008 0.94839 0.99247 1.01024 1.69661 1.16506 1.35975 1.33778 0.84957 0.77939 0.77951 0.77676 1.19776 1.19300 1.19909 1.24488 1.03379 0.88695 0.95870 0.89816 0.90904 0.88861 0.84996 0.89697 0.90257 0.89307 0.90782 0.90062 0.91266 0.91880 0.92333 0.94531 0.87842 0.89971 0.91708 0.87046 0.89774 0.76886 0.91239 0.87974 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 8.90 127.77 1.14 2.05 16 2 N -0.60 -13.25 3.09 -826.82 -2.56 -15.81 16 3 C 0.54 13.14 6.39 87.66 0.56 13.70 16 4 O -0.58 -19.05 15.21 -3.04 -0.05 -19.10 16 5 C -0.19 -3.01 5.01 -11.66 -0.06 -3.07 16 6 H 0.15 1.51 6.81 -2.39 -0.02 1.50 16 7 C -0.13 -1.94 9.74 30.48 0.30 -1.64 16 8 C -0.09 -1.45 2.44 -52.01 -0.13 -1.58 16 9 C -0.08 -0.83 6.58 31.57 0.21 -0.63 16 10 C -0.12 -1.23 6.91 31.93 0.22 -1.01 16 11 C -0.12 -1.88 6.84 31.72 0.22 -1.66 16 12 C -0.09 -1.83 5.89 31.23 0.18 -1.65 16 13 C 0.12 3.37 4.41 46.56 0.21 3.58 16 14 C 0.01 0.36 6.26 86.37 0.54 0.90 16 15 N -0.48 -15.94 5.94 -912.16 -5.42 -21.37 16 16 C 0.03 0.91 5.31 85.56 0.45 1.37 16 17 C 0.44 20.98 7.59 87.66 0.67 21.64 16 18 O -0.62 -35.02 15.13 -3.05 -0.05 -35.07 16 19 N -0.57 -29.20 5.29 -306.99 -1.62 -30.83 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.01 13.05 21.67 0.28 -48.73 16 24 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 28 C 0.00 0.12 7.57 86.41 0.65 0.77 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.16 5.72 -2.38 -0.01 1.15 16 31 H 0.09 0.99 6.74 -2.39 -0.02 0.97 16 32 H 0.13 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.68 7.72 -2.38 -0.02 1.66 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.58 8.11 -2.39 -0.02 0.56 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.04 0.94 7.11 -2.39 -0.02 0.92 16 42 H 0.10 3.34 7.19 -2.39 -0.02 3.33 16 43 H 0.08 2.44 5.58 -2.39 -0.01 2.42 16 44 H 0.06 2.51 8.10 -2.39 -0.02 2.49 16 45 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 46 H 0.08 2.34 7.70 -2.39 -0.02 2.32 16 47 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 48 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 49 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.10 1.85 7.18 -2.39 -0.02 1.83 16 Total: -1.00 -75.00 396.35 -0.73 -75.73 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.22 Total: 35.72 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.44 Total: 14.52 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -9.32 Total: -116.73 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -0.09 Total: -54.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -75.00 -0.73 -75.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733315896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.874 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds